Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86806 * 119.99726 * 2 1 4 4 H 1.48493 * 109.46815 * 269.99889 * 3 2 1 5 5 H 1.48499 * 109.46871 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47088 * 149.99544 * 3 2 1 7 7 C 1.40192 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.40308 * 120.00026 * 0.02562 * 7 2 1 10 10 N 1.33302 * 126.54148 * 359.97438 * 9 7 2 11 11 C 1.33500 * 107.23473 * 180.02562 * 10 9 7 12 12 C 1.48051 * 125.68991 * 179.97438 * 11 10 9 13 13 C 1.38468 * 120.35313 * 47.20499 * 12 11 10 14 14 C 1.38979 * 120.67902 * 180.02562 * 13 12 11 15 15 C 1.36266 * 121.14911 * 0.02744 * 14 13 12 16 16 C 1.40543 * 120.07227 * 359.97334 * 15 14 13 17 17 C 1.40576 * 121.17071 * 180.02562 * 16 15 14 18 18 C 1.36135 * 119.65593 * 179.97438 * 17 16 15 19 19 C 1.39301 * 120.95939 * 0.02562 * 18 17 16 20 20 C 1.36241 * 120.93902 * 359.97438 * 19 18 17 21 21 C 1.40205 * 119.68611 * 0.02562 * 20 19 18 22 22 N 1.32172 * 108.61436 * 0.22447 * 11 10 9 23 23 N 1.28848 * 109.18697 * 359.61950 * 22 11 10 24 24 H 0.96998 * 125.98149 * 180.14257 * 23 22 11 25 25 H 0.97000 * 120.00578 * 0.02562 * 1 2 3 26 26 H 1.07992 * 119.66520 * 0.03859 * 13 12 11 27 27 H 1.08000 * 119.42968 * 179.97438 * 14 13 12 28 28 H 1.07993 * 119.96426 * 179.69852 * 15 14 13 29 29 H 1.08006 * 120.17230 * 359.97426 * 17 16 15 30 30 H 1.08002 * 119.51930 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.53367 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.15403 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4404 0.7001 7 6 2.0078 -1.2141 0.0005 8 1 3.0878 -1.2140 0.0010 9 6 1.3063 -2.4292 0.0005 10 7 -0.0180 -2.5811 0.0005 11 6 -0.2657 -3.8930 0.0011 12 6 -1.6075 -4.5186 0.0019 13 6 -2.5850 -4.0789 -0.8747 14 6 -3.8470 -4.6611 -0.8794 15 6 -4.1582 -5.6763 -0.0254 16 6 -3.1962 -6.1538 0.8811 17 6 -3.4921 -7.2002 1.7719 18 6 -2.5367 -7.6390 2.6368 19 6 -1.2673 -7.0656 2.6534 20 6 -0.9464 -6.0499 1.8041 21 6 -1.9051 -5.5720 0.8995 22 7 0.8869 -4.5399 0.0064 23 7 1.8518 -3.6860 0.0010 24 1 2.7988 -3.8961 0.0012 25 1 -0.4851 0.8400 -0.0004 26 1 -2.3646 -3.2756 -1.5619 27 1 -4.5945 -4.3020 -1.5714 28 1 -5.1464 -6.1114 -0.0422 29 1 -4.4724 -7.6537 1.7702 30 1 -2.7666 -8.4429 3.3205 31 1 -0.5267 -7.4320 3.3489 32 1 0.0416 -5.6143 1.8281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071197005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = 97.386532 kcal Electronic energy + Delta-G solvation = -18569.733229 eV Core-core repulsion = 15688.332601 eV Total energy + Delta-G solvation = -2881.400628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.93740 -41.03294 -37.29656 -35.64907 -34.42149 -32.78684 -31.56247 -31.12620 -29.84164 -27.72089 -24.80588 -23.79271 -23.58645 -22.66102 -20.90832 -19.45673 -18.39523 -18.02603 -17.73373 -17.00248 -16.52317 -16.03316 -15.51613 -15.20129 -14.91303 -14.43744 -14.36255 -14.21807 -13.56549 -13.54340 -12.93908 -12.88035 -12.63325 -12.28606 -12.12690 -11.83629 -11.82416 -11.68653 -11.38447 -11.05834 -10.43080 -10.14168 -9.81895 -9.50126 -8.60140 -8.49261 -6.65618 -0.40655 0.14685 1.01982 1.32095 1.43654 1.59341 1.72494 2.13119 2.21728 2.53795 2.72070 3.24476 3.38471 3.59113 3.91801 4.01468 4.10378 4.21432 4.36846 4.46243 4.52056 4.64799 4.71963 4.86583 5.11406 5.17795 5.27948 5.30863 5.38752 5.49932 5.60921 5.66017 5.81297 5.98845 6.08947 6.17476 6.32072 6.50045 6.78681 7.16432 8.24404 8.47176 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.005242 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.782879 B = 5340.442137 C = 5881.206006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.034 3.966 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.480 4.480 8 H 0.104 0.896 9 C 0.333 3.667 10 N -0.555 5.555 11 C 0.188 3.812 12 C -0.001 4.001 13 C -0.103 4.103 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.069 4.069 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.056 4.056 22 N -0.392 5.392 23 N -0.483 5.483 24 H 0.437 0.563 25 H 0.283 0.717 26 H 0.105 0.895 27 H 0.158 0.842 28 H 0.173 0.827 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 -9.064 2.501 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.188 4.188 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.521 4.521 8 H 0.122 0.878 9 C 0.081 3.919 10 N -0.288 5.288 11 C -0.091 4.091 12 C -0.003 4.003 13 C -0.124 4.124 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.069 4.069 17 C -0.120 4.120 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.057 4.057 22 N -0.230 5.230 23 N -0.204 5.204 24 H 0.281 0.719 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.175 0.825 28 H 0.190 0.810 29 H 0.186 0.814 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.156 -9.439 2.510 12.108 hybrid contribution 1.731 1.141 -0.208 2.084 sum -5.425 -8.297 2.302 10.177 Atomic orbital electron populations 1.70111 1.09208 1.29799 1.31360 1.26901 0.95650 1.04481 0.91763 0.84899 0.78688 0.74713 0.79432 1.18640 1.19628 1.17407 1.18790 0.94873 0.87610 1.50853 0.87768 1.21971 0.88217 0.87315 0.94422 1.72321 1.12226 1.13063 1.31237 1.22547 0.92554 0.89445 1.04566 1.17861 0.89346 0.95595 0.97536 1.21225 0.93933 0.99205 0.98041 1.21019 0.95153 0.96759 1.00332 1.21461 0.99759 0.96380 0.93975 1.18402 0.92189 0.97724 0.98634 1.21422 1.01183 0.95091 0.94343 1.21217 0.92326 1.00523 0.99529 1.21143 0.98441 0.95909 0.98535 1.21178 0.98592 0.98168 0.96262 1.18198 0.95307 0.95828 0.96395 1.73891 0.96504 1.20958 1.31655 1.44908 1.08271 1.04273 1.62913 0.71878 0.90693 0.87671 0.82489 0.80990 0.81424 0.82234 0.84492 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.51 11.94 21.87 0.26 -43.25 16 2 C 0.03 1.73 5.50 85.34 0.47 2.20 16 3 Si 1.00 37.68 29.56 68.60 2.03 39.71 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 7 C -0.48 -25.61 9.47 23.25 0.22 -25.39 16 8 H 0.10 4.93 7.85 -2.91 -0.02 4.91 16 9 C 0.33 18.99 7.70 133.75 1.03 20.02 16 10 N -0.56 -33.58 9.66 -187.05 -1.81 -35.39 16 11 C 0.19 10.36 6.80 137.31 0.93 11.30 16 12 C 0.00 -0.04 5.91 -19.80 -0.12 -0.16 16 13 C -0.10 -4.33 9.74 22.50 0.22 -4.11 16 14 C -0.11 -3.50 9.93 21.99 0.22 -3.29 16 15 C -0.10 -2.59 9.75 22.37 0.22 -2.38 16 16 C -0.07 -2.21 5.74 -21.31 -0.12 -2.33 16 17 C -0.10 -2.44 9.77 22.35 0.22 -2.22 16 18 C -0.12 -2.78 9.95 22.04 0.22 -2.56 16 19 C -0.12 -3.69 9.95 22.06 0.22 -3.47 16 20 C -0.12 -4.97 9.26 22.28 0.21 -4.77 16 21 C -0.06 -2.31 5.76 -21.15 -0.12 -2.44 16 22 N -0.39 -20.68 10.69 -52.55 -0.56 -21.24 16 23 N -0.48 -24.39 7.07 -55.42 -0.39 -24.78 16 24 H 0.44 18.24 8.96 -219.80 -1.97 16.27 16 25 H 0.28 14.25 8.29 -92.71 -0.77 13.48 16 26 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 28 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.10 4.62 6.12 -2.91 -0.02 4.60 16 Total: -1.00 -74.64 285.03 2.54 -72.10 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.80 Total: 32.43 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.81 Total: -19.58 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -2.50 Total: -124.66 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -74.64 2.54 -72.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071197005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.491 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds