Wall clock time and date at job start Mon Mar 30 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00611 * 2 1 4 4 N 1.34781 * 119.99614 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99721 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47195 * 184.84755 * 5 4 2 7 7 C 1.50702 * 109.47376 * 304.85291 * 5 4 2 8 8 H 1.07998 * 120.00153 * 86.27250 * 7 5 4 9 9 C 1.37883 * 119.99849 * 266.26706 * 7 5 4 10 10 N 1.31510 * 119.99907 * 185.34906 * 9 7 5 11 11 Si 1.86802 * 119.99779 * 5.35182 * 9 7 5 12 12 H 1.48494 * 109.47018 * 272.40179 * 11 9 7 13 13 H 1.48501 * 109.47342 * 32.40839 * 11 9 7 14 14 H 1.48506 * 109.46768 * 152.40646 * 11 9 7 15 15 C 1.52999 * 109.46712 * 64.85436 * 5 4 2 16 16 S 1.81400 * 109.47266 * 65.00010 * 15 5 4 17 17 C 1.76208 * 102.99954 * 179.97438 * 16 15 5 18 18 C 1.38970 * 120.07719 * 359.72620 * 17 16 15 19 19 C 1.38087 * 119.91718 * 179.76463 * 18 17 16 20 20 C 1.38304 * 120.07868 * 0.48666 * 19 18 17 21 21 C 1.38306 * 120.15793 * 359.76356 * 20 19 18 22 22 C 1.38071 * 120.08260 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47014 * 299.99887 * 1 2 3 25 25 H 1.09001 * 109.47356 * 59.99864 * 1 2 3 26 26 H 0.96994 * 120.00290 * 0.02562 * 4 2 1 27 27 H 0.96993 * 119.99728 * 180.02562 * 10 9 7 28 28 H 1.09007 * 109.46743 * 184.99539 * 15 5 4 29 29 H 1.09002 * 109.47418 * 304.99392 * 15 5 4 30 30 H 1.08003 * 120.04480 * 359.97438 * 18 17 16 31 31 H 1.07994 * 119.96235 * 180.22616 * 19 18 17 32 32 H 1.07995 * 119.92089 * 179.74322 * 20 19 18 33 33 H 1.08000 * 119.95449 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.04311 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0091 -2.1914 -0.0863 7 6 4.1478 -0.3562 -1.1667 8 1 4.2706 0.7123 -1.0686 9 6 4.4505 -0.9782 -2.3595 10 7 4.9871 -0.2892 -3.3427 11 14 4.0981 -2.7995 -2.5787 12 1 5.2602 -3.5897 -2.0990 13 1 2.8915 -3.1681 -1.7954 14 1 3.8624 -3.0885 -4.0162 15 6 4.1563 -0.5535 1.3052 16 16 3.6769 -1.6110 2.6988 17 6 4.3407 -0.7580 4.0904 18 6 5.0388 0.4302 3.9109 19 6 5.5534 1.0985 5.0042 20 6 5.3835 0.5815 6.2757 21 6 4.6938 -0.6034 6.4576 22 6 4.1727 -1.2749 5.3695 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.6958 -2.0073 0.0005 27 1 5.1997 -0.7267 -4.1819 28 1 5.2426 -0.4720 1.2678 29 1 3.7218 0.4377 1.4349 30 1 5.1757 0.8322 2.9179 31 1 6.0929 2.0238 4.8659 32 1 5.7907 1.1042 7.1286 33 1 4.5634 -1.0044 7.4519 34 1 3.6346 -2.2004 5.5122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082300865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:56 Heat of formation + Delta-G solvation = -17.503084 kcal Electronic energy + Delta-G solvation = -17457.121276 eV Core-core repulsion = 14673.889861 eV Total energy + Delta-G solvation = -2783.231415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.75184 -38.66878 -34.69317 -32.29877 -31.19866 -30.81785 -30.49117 -28.09413 -25.71262 -22.67814 -22.44862 -21.32076 -19.28670 -17.52406 -17.24366 -16.22934 -15.93286 -15.07616 -14.86480 -14.46777 -14.30624 -14.10669 -13.40774 -13.25674 -13.18831 -12.85757 -12.72353 -12.21257 -12.00670 -11.71839 -11.50468 -11.35443 -11.04539 -11.02102 -10.38925 -10.17569 -9.74377 -9.55493 -9.50835 -8.88914 -8.83185 -8.60453 -7.93298 -7.03151 -6.23033 -4.25881 1.35085 1.46781 1.98042 2.94305 3.15754 3.22195 3.25490 3.67230 3.82592 4.22694 4.25981 4.95413 5.02035 5.17328 5.21305 5.49387 5.53954 5.61259 5.64483 5.84252 5.87452 5.92166 5.95678 6.07734 6.27724 6.38202 6.44459 6.46885 6.58042 6.70834 7.00443 7.39016 7.61214 8.25182 8.62093 8.98136 9.31955 9.37501 10.88462 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.005880 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.447017 B = 4760.401235 C = 5117.770108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.538 6.538 4 N -0.725 5.725 5 C 0.255 3.745 6 H 0.055 0.945 7 C -0.501 4.501 8 H 0.089 0.911 9 C 0.079 3.921 10 N -0.881 5.881 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.265 1.265 14 H -0.286 1.286 15 C -0.089 4.089 16 S -0.155 6.155 17 C -0.069 4.069 18 C -0.133 4.133 19 C -0.100 4.100 20 C -0.137 4.137 21 C -0.107 4.107 22 C -0.110 4.110 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.377 0.623 27 H 0.267 0.733 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -3.386 14.439 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.415 6.415 4 N -0.376 5.376 5 C 0.152 3.848 6 H 0.073 0.927 7 C -0.542 4.542 8 H 0.107 0.893 9 C -0.126 4.126 10 N -0.518 5.518 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.190 1.190 14 H -0.212 1.212 15 C -0.237 4.237 16 S 0.092 5.908 17 C -0.182 4.182 18 C -0.157 4.157 19 C -0.120 4.120 20 C -0.159 4.159 21 C -0.126 4.126 22 C -0.134 4.134 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.209 0.791 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.944 -3.712 14.080 15.086 hybrid contribution 0.271 -0.216 -0.257 0.431 sum -3.673 -3.928 13.824 14.833 Atomic orbital electron populations 1.21890 0.94443 1.02936 1.03981 1.20326 0.89214 0.84438 0.76355 1.90636 1.70288 1.31444 1.49151 1.47278 1.08871 1.07101 1.74380 1.18764 0.77954 0.96792 0.91267 0.92703 1.21051 1.42440 0.96840 0.93833 0.89264 1.25105 0.93724 0.97948 0.95800 1.69894 1.40551 1.36667 1.04655 0.86931 0.79402 0.85825 0.77763 1.19956 1.18958 1.21180 1.24488 1.04220 1.01914 0.93117 1.85303 1.70547 1.36005 0.98906 1.21917 1.00787 0.98076 0.97446 1.21374 0.99241 0.95034 1.00021 1.21069 0.99041 0.99475 0.92428 1.21090 1.00866 0.96857 0.97039 1.21013 0.97991 0.95460 0.98171 1.20753 1.01519 1.00342 0.90777 0.91601 0.89996 0.89762 0.79091 0.92290 0.89276 0.88252 0.85311 0.85949 0.86268 0.86033 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 10.39 36.01 0.37 -2.17 16 2 C 0.51 10.43 7.34 -10.98 -0.08 10.35 16 3 O -0.54 -13.37 14.05 5.56 0.08 -13.29 16 4 N -0.73 -14.40 4.96 -54.93 -0.27 -14.67 16 5 C 0.26 5.67 2.06 -69.08 -0.14 5.53 16 6 H 0.06 1.20 5.81 -51.93 -0.30 0.90 16 7 C -0.50 -13.57 7.74 -34.44 -0.27 -13.83 16 8 H 0.09 2.78 7.50 -52.49 -0.39 2.39 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 10 N -0.88 -26.05 13.96 55.43 0.77 -25.28 16 11 Si 0.87 20.08 26.89 -169.99 -4.57 15.51 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.26 -5.59 7.09 56.52 0.40 -5.19 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.09 -1.80 3.70 37.16 0.14 -1.66 16 16 S -0.15 -2.70 21.66 -107.50 -2.33 -5.03 16 17 C -0.07 -1.12 6.11 -39.04 -0.24 -1.36 16 18 C -0.13 -2.11 9.36 -39.37 -0.37 -2.47 16 19 C -0.10 -1.34 10.04 -39.61 -0.40 -1.74 16 20 C -0.14 -1.63 10.04 -39.53 -0.40 -2.03 16 21 C -0.11 -1.27 10.04 -39.62 -0.40 -1.67 16 22 C -0.11 -1.53 9.79 -39.37 -0.39 -1.91 16 23 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 24 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.38 6.39 8.67 -40.82 -0.35 6.04 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.09 1.81 7.74 -51.92 -0.40 1.40 16 29 H 0.10 2.19 6.04 -51.92 -0.31 1.88 16 30 H 0.13 2.15 5.88 -52.48 -0.31 1.84 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 301.28 15.07 4.54 4.54 Total: -1.00 -31.44 301.28 -8.20 -39.64 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.16 Total: 9.46 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.26 Total: -10.88 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.50 Total: -39.95 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.57 Total: 15.51 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.33 Total: -5.03 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.44 -8.20 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082300865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.138 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds