Wall clock time and date at job start Mon Mar 30 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00611 * 2 1 4 4 N 1.34781 * 119.99614 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99721 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47195 * 184.84755 * 5 4 2 7 7 C 1.50702 * 109.47376 * 304.85291 * 5 4 2 8 8 H 1.07998 * 120.00153 * 86.27250 * 7 5 4 9 9 C 1.37883 * 119.99849 * 266.26706 * 7 5 4 10 10 N 1.31510 * 119.99907 * 185.34906 * 9 7 5 11 11 Si 1.86802 * 119.99779 * 5.35182 * 9 7 5 12 12 H 1.48494 * 109.47018 * 272.40179 * 11 9 7 13 13 H 1.48501 * 109.47342 * 32.40839 * 11 9 7 14 14 H 1.48506 * 109.46768 * 152.40646 * 11 9 7 15 15 C 1.52999 * 109.46712 * 64.85436 * 5 4 2 16 16 S 1.81400 * 109.47266 * 65.00010 * 15 5 4 17 17 C 1.76208 * 102.99954 * 179.97438 * 16 15 5 18 18 C 1.38970 * 120.07719 * 359.72620 * 17 16 15 19 19 C 1.38087 * 119.91718 * 179.76463 * 18 17 16 20 20 C 1.38304 * 120.07868 * 0.48666 * 19 18 17 21 21 C 1.38306 * 120.15793 * 359.76356 * 20 19 18 22 22 C 1.38071 * 120.08260 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47014 * 299.99887 * 1 2 3 25 25 H 1.09001 * 109.47356 * 59.99864 * 1 2 3 26 26 H 0.96994 * 120.00290 * 0.02562 * 4 2 1 27 27 H 0.96993 * 119.99728 * 180.02562 * 10 9 7 28 28 H 1.09007 * 109.46743 * 184.99539 * 15 5 4 29 29 H 1.09002 * 109.47418 * 304.99392 * 15 5 4 30 30 H 1.08003 * 120.04480 * 359.97438 * 18 17 16 31 31 H 1.07994 * 119.96235 * 180.22616 * 19 18 17 32 32 H 1.07995 * 119.92089 * 179.74322 * 20 19 18 33 33 H 1.08000 * 119.95449 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.04311 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0091 -2.1914 -0.0863 7 6 4.1478 -0.3562 -1.1667 8 1 4.2706 0.7123 -1.0686 9 6 4.4505 -0.9782 -2.3595 10 7 4.9871 -0.2892 -3.3427 11 14 4.0981 -2.7995 -2.5787 12 1 5.2602 -3.5897 -2.0990 13 1 2.8915 -3.1681 -1.7954 14 1 3.8624 -3.0885 -4.0162 15 6 4.1563 -0.5535 1.3052 16 16 3.6769 -1.6110 2.6988 17 6 4.3407 -0.7580 4.0904 18 6 5.0388 0.4302 3.9109 19 6 5.5534 1.0985 5.0042 20 6 5.3835 0.5815 6.2757 21 6 4.6938 -0.6034 6.4576 22 6 4.1727 -1.2749 5.3695 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.6958 -2.0073 0.0005 27 1 5.1997 -0.7267 -4.1819 28 1 5.2426 -0.4720 1.2678 29 1 3.7218 0.4377 1.4349 30 1 5.1757 0.8322 2.9179 31 1 6.0929 2.0238 4.8659 32 1 5.7907 1.1042 7.1286 33 1 4.5634 -1.0044 7.4519 34 1 3.6346 -2.2004 5.5122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082300865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:56 Heat of formation + Delta-G solvation = -38.634085 kcal Electronic energy + Delta-G solvation = -17458.037585 eV Core-core repulsion = 14673.889861 eV Total energy + Delta-G solvation = -2784.147724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37458 -39.80947 -36.52719 -34.32154 -32.59916 -31.89671 -31.81780 -29.50634 -27.67605 -23.91259 -23.57531 -22.89872 -21.04307 -19.15719 -18.67655 -17.93249 -17.13170 -16.81831 -16.22430 -15.91027 -15.78783 -15.50072 -14.90875 -14.73189 -14.53489 -14.35556 -14.10638 -13.63140 -13.55240 -13.19301 -12.96185 -12.78502 -12.65264 -12.18470 -12.00469 -11.84369 -11.65024 -11.12792 -10.88159 -10.71617 -10.37696 -9.94948 -9.69203 -8.36110 -8.33725 -6.43780 0.26206 0.40729 0.59642 1.33751 1.35715 1.46013 1.48112 2.06043 2.30137 2.60418 2.77032 3.20976 3.91974 3.95656 4.02278 4.18368 4.24729 4.30719 4.51021 4.54948 4.58682 4.64685 4.75151 4.78879 4.98305 5.06173 5.12224 5.34517 5.39037 5.45295 5.54971 5.91812 5.99979 6.19855 6.70194 7.01856 7.22495 7.75622 8.82567 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.005880 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.447017 B = 4760.401235 C = 5117.770108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.498 3.502 3 O -0.594 6.594 4 N -0.718 5.718 5 C 0.261 3.739 6 H 0.068 0.932 7 C -0.507 4.507 8 H 0.026 0.974 9 C 0.017 3.983 10 N -0.940 5.940 11 Si 0.945 3.055 12 H -0.263 1.263 13 H -0.229 1.229 14 H -0.288 1.288 15 C -0.083 4.083 16 S -0.129 6.129 17 C -0.099 4.099 18 C -0.158 4.158 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.099 4.099 22 C -0.113 4.113 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.399 0.601 27 H 0.268 0.732 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -6.020 17.587 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.286 3.714 3 O -0.475 6.475 4 N -0.369 5.369 5 C 0.157 3.843 6 H 0.086 0.914 7 C -0.547 4.547 8 H 0.044 0.956 9 C -0.182 4.182 10 N -0.579 5.579 11 Si 0.767 3.233 12 H -0.188 1.188 13 H -0.152 1.152 14 H -0.214 1.214 15 C -0.233 4.233 16 S 0.116 5.884 17 C -0.212 4.212 18 C -0.182 4.182 19 C -0.128 4.128 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.137 4.137 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.234 0.766 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.561 -6.363 17.263 19.220 hybrid contribution 0.813 0.752 -1.026 1.510 sum -4.748 -5.610 16.237 17.823 Atomic orbital electron populations 1.21846 0.89175 1.05784 1.05082 1.21424 0.91763 0.83454 0.74764 1.90633 1.72060 1.33393 1.51389 1.46865 1.07830 1.08280 1.73970 1.18490 0.79249 0.96340 0.90252 0.91432 1.21064 1.42905 0.94495 0.96264 0.95585 1.26090 0.93266 1.03846 0.95027 1.70076 1.42930 1.39359 1.05558 0.85791 0.80936 0.78587 0.77978 1.18801 1.15151 1.21414 1.24020 1.03059 1.01328 0.94878 1.84840 1.71077 1.34621 0.97829 1.22023 1.02567 0.98759 0.97805 1.21340 1.00989 0.95973 0.99930 1.21348 0.98878 1.00026 0.92578 1.21558 0.99336 0.96642 0.97189 1.21488 0.96266 0.94885 0.99234 1.21036 1.01496 1.01020 0.90112 0.87888 0.88253 0.89177 0.76612 0.92257 0.90733 0.91009 0.87924 0.84355 0.82621 0.82131 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 10.39 71.24 0.74 -3.56 16 2 C 0.50 20.34 7.34 87.66 0.64 20.98 16 3 O -0.59 -31.17 14.05 -3.03 -0.04 -31.21 16 4 N -0.72 -27.90 4.96 -446.08 -2.21 -30.11 16 5 C 0.26 11.84 2.06 44.25 0.09 11.93 16 6 H 0.07 2.88 5.81 -2.39 -0.01 2.87 16 7 C -0.51 -29.13 7.74 25.60 0.20 -28.93 16 8 H 0.03 1.78 7.50 -2.91 -0.02 1.76 16 9 C 0.02 0.97 5.47 84.66 0.46 1.44 16 10 N -0.94 -58.75 13.96 21.45 0.30 -58.46 16 11 Si 0.95 41.32 26.89 68.60 1.84 43.16 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 13 H -0.23 -8.55 7.09 99.48 0.70 -7.84 16 14 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 15 C -0.08 -3.58 3.70 71.98 0.27 -3.31 16 16 S -0.13 -4.46 21.66 -56.49 -1.22 -5.68 16 17 C -0.10 -3.15 6.11 22.62 0.14 -3.01 16 18 C -0.16 -5.16 9.36 22.41 0.21 -4.95 16 19 C -0.11 -2.78 10.04 22.25 0.22 -2.55 16 20 C -0.13 -2.54 10.04 22.30 0.22 -2.32 16 21 C -0.10 -1.95 10.04 22.25 0.22 -1.73 16 22 C -0.11 -2.83 9.79 22.41 0.22 -2.62 16 23 H 0.10 2.01 7.91 -2.39 -0.02 1.99 16 24 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.40 12.28 8.67 -92.71 -0.80 11.48 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.07 3.30 7.74 -2.39 -0.02 3.28 16 29 H 0.07 3.45 6.04 -2.39 -0.01 3.44 16 30 H 0.10 3.79 5.88 -2.91 -0.02 3.77 16 31 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -75.75 301.28 2.61 -73.14 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.31 Total: 27.80 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 3.64 Total: -18.63 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -1.91 Total: -88.57 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.04 Total: -31.21 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.84 Total: 43.16 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -1.22 Total: -5.68 kcal Total: -75.75 2.61 -73.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082300865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.506 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds