Wall clock time and date at job start Mon Mar 30 2020 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 120.04330 * 2 1 4 4 Cl 1.73600 * 119.97517 * 359.97438 * 3 2 1 5 5 C 1.38382 * 120.04928 * 179.97438 * 3 2 1 6 6 C 1.38291 * 120.13379 * 0.02669 * 5 3 2 7 7 C 1.38088 * 120.08961 * 359.72338 * 6 5 3 8 8 C 1.38869 * 120.04587 * 179.97438 * 2 1 3 9 9 N 1.39675 * 120.06419 * 0.02562 * 8 2 1 10 10 C 1.47449 * 110.99788 * 119.87597 * 9 8 2 11 11 C 1.54318 * 107.23131 * 123.25546 * 10 9 8 12 12 C 1.55140 * 103.01849 * 22.28608 * 11 10 9 13 13 H 1.09004 * 110.99115 * 82.43982 * 12 11 10 14 14 C 1.50709 * 110.98825 * 206.21419 * 12 11 10 15 15 H 1.07996 * 119.99481 * 118.54678 * 14 12 11 16 16 C 1.37877 * 119.99999 * 298.54585 * 14 12 11 17 17 N 1.31510 * 120.00149 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99689 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47307 * 60.00322 * 18 16 14 20 20 H 1.48495 * 109.47081 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47272 * 299.99967 * 18 16 14 22 22 C 1.47846 * 111.00028 * 240.71697 * 9 8 2 23 23 H 1.08999 * 109.47210 * 270.01635 * 1 2 3 24 24 H 1.08998 * 109.47293 * 30.01273 * 1 2 3 25 25 H 1.09000 * 109.47293 * 150.01627 * 1 2 3 26 26 H 1.08002 * 119.93674 * 180.02562 * 5 3 2 27 27 H 1.08004 * 119.95289 * 180.02562 * 6 5 3 28 28 H 1.08003 * 120.02522 * 180.27250 * 7 6 5 29 29 H 1.08998 * 109.89032 * 242.66113 * 10 9 8 30 30 H 1.08996 * 109.88568 * 3.85650 * 10 9 8 31 31 H 1.08995 * 110.70589 * 140.66742 * 11 10 9 32 32 H 1.09006 * 110.70793 * 263.90090 * 11 10 9 33 33 H 0.96998 * 119.99899 * 180.02562 * 17 16 14 34 34 H 1.08997 * 110.37447 * 332.46974 * 22 9 8 35 35 H 1.09004 * 110.36795 * 94.80904 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3315 2.7004 -0.0007 5 6 3.5829 1.1968 0.0005 6 6 4.2773 0.0009 0.0005 7 6 3.5916 -1.1978 0.0057 8 6 2.2023 -1.2021 0.0005 9 7 1.5062 -2.4130 0.0005 10 6 1.8379 -3.2131 -1.1928 11 6 2.3658 -4.5759 -0.6973 12 6 1.7709 -4.6825 0.7316 13 1 0.7430 -5.0439 0.7006 14 6 2.6239 -5.5642 1.6070 15 1 3.0879 -5.1579 2.4936 16 6 2.8119 -6.8894 1.2760 17 7 2.2473 -7.3839 0.1962 18 14 3.8686 -7.9823 2.3616 19 1 3.2884 -8.0326 3.7276 20 1 3.9113 -9.3529 1.7918 21 1 5.2456 -7.4304 2.4286 22 6 1.8270 -3.2086 1.2047 23 1 -0.3633 0.0003 1.0276 24 1 -0.3634 0.8898 -0.5140 25 1 -0.3634 -0.8901 -0.5136 26 1 4.1218 2.1328 0.0010 27 1 5.3573 0.0044 0.0014 28 1 4.1350 -2.1311 0.0102 29 1 0.9451 -3.3601 -1.8006 30 1 2.6072 -2.7073 -1.7761 31 1 1.9983 -5.3844 -1.3291 32 1 3.4553 -4.5775 -0.6623 33 1 2.3793 -8.3163 -0.0365 34 1 2.8257 -2.9638 1.5663 35 1 1.0863 -3.0319 1.9846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084530350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:41 Heat of formation + Delta-G solvation = 16.831300 kcal Electronic energy + Delta-G solvation = -17824.099521 eV Core-core repulsion = 15040.313250 eV Total energy + Delta-G solvation = -2783.786271 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03335 -37.56862 -36.22204 -33.37917 -32.52187 -30.92425 -28.52450 -28.18733 -26.43994 -24.56021 -22.46738 -21.25587 -19.94539 -19.65902 -17.15270 -16.16974 -15.87355 -15.24640 -14.68298 -14.52202 -14.15929 -13.93549 -13.24015 -12.75233 -12.53762 -12.38927 -12.24800 -12.15525 -11.72786 -11.31618 -11.24625 -11.16006 -11.08878 -10.86127 -10.68679 -10.60727 -10.33268 -9.74928 -9.39474 -8.93437 -8.52396 -8.47196 -8.33736 -7.89257 -6.08371 -4.12468 1.25955 1.38239 2.17321 3.27752 3.32997 3.35251 3.69341 4.34693 4.49247 4.91316 5.04545 5.21146 5.25342 5.42744 5.51464 5.76767 5.82329 5.87363 5.93647 6.02036 6.13588 6.28397 6.31843 6.40551 6.43497 6.52542 6.67729 6.71793 6.87408 7.02632 7.08205 7.47260 7.56930 7.74033 7.91432 7.95575 8.33514 8.89147 9.52430 11.01037 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038556 B = 0.004572 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.033630 B = 6123.263677 C = 6380.054049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.061 4.061 3 C -0.035 4.035 4 Cl -0.078 7.078 5 C -0.122 4.122 6 C -0.108 4.108 7 C -0.139 4.139 8 C 0.116 3.884 9 N -0.503 5.503 10 C 0.042 3.958 11 C -0.116 4.116 12 C 0.051 3.949 13 H 0.039 0.961 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.051 3.949 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.261 0.739 34 H 0.043 0.957 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 15.177 -2.208 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.063 4.063 3 C -0.062 4.062 4 Cl -0.049 7.049 5 C -0.141 4.141 6 C -0.127 4.127 7 C -0.159 4.159 8 C 0.021 3.979 9 N -0.224 5.224 10 C -0.083 4.083 11 C -0.155 4.155 12 C 0.032 3.968 13 H 0.057 0.943 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.074 4.074 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.081 15.233 -2.324 15.410 hybrid contribution 1.520 -0.693 0.546 1.758 sum 1.439 14.540 -1.778 14.718 Atomic orbital electron populations 1.20686 0.89901 1.03110 1.02638 1.19660 0.97156 0.89886 0.99598 1.20657 0.92138 0.86230 1.07178 1.98330 1.77255 1.32278 1.97045 1.20929 0.91840 0.98894 1.02411 1.20935 0.99844 0.91552 1.00402 1.22006 0.95078 0.98959 0.99881 1.18904 0.89982 0.91698 0.97316 1.61242 1.54407 1.02197 1.04580 1.23031 0.99102 0.95078 0.91132 1.22717 0.99339 0.93316 1.00132 1.19744 0.97158 0.88385 0.91556 0.94328 1.20971 1.30734 0.94541 1.09375 0.92599 1.24945 0.95676 0.97894 0.95119 1.69942 1.43567 1.14443 1.24556 0.86669 0.80904 0.79633 0.80867 1.20194 1.21270 1.20321 1.23339 0.98542 0.95329 0.90161 0.91178 0.91990 0.89763 0.85444 0.85479 0.85124 0.91351 0.94050 0.90476 0.93238 0.92890 0.93872 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.37 36.00 0.34 -1.14 16 2 C -0.06 -0.93 5.90 -104.39 -0.62 -1.55 16 3 C -0.04 -0.48 6.31 -39.53 -0.25 -0.73 16 4 Cl -0.08 -0.94 27.29 -51.86 -1.42 -2.36 16 5 C -0.12 -1.54 9.83 -39.51 -0.39 -1.93 16 6 C -0.11 -1.42 10.04 -39.62 -0.40 -1.82 16 7 C -0.14 -2.19 7.82 -39.38 -0.31 -2.49 16 8 C 0.12 1.95 4.61 -83.79 -0.39 1.56 16 9 N -0.50 -9.31 4.11 -167.92 -0.69 -10.00 16 10 C 0.04 0.80 6.54 -2.83 -0.02 0.78 16 11 C -0.12 -2.59 5.64 -24.91 -0.14 -2.73 16 12 C 0.05 1.22 2.96 -89.63 -0.27 0.95 16 13 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.52 -13.72 8.55 -34.44 -0.29 -14.02 16 15 H 0.06 1.46 7.79 -52.49 -0.41 1.06 16 16 C 0.07 1.77 5.34 -17.82 -0.10 1.68 16 17 N -0.89 -24.68 12.12 55.43 0.67 -24.01 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.05 1.06 5.99 -2.30 -0.01 1.04 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.76 6.90 -51.93 -0.36 0.40 16 25 H 0.08 1.24 7.46 -51.93 -0.39 0.85 16 26 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 28 H 0.13 2.16 7.70 -52.48 -0.40 1.75 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.73 7.03 -51.93 -0.37 0.36 16 31 H 0.08 1.86 7.53 -51.93 -0.39 1.47 16 32 H 0.05 1.14 8.03 -51.93 -0.42 0.72 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 34 H 0.04 0.90 6.65 -51.93 -0.35 0.55 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -26.79 299.37 -9.53 -36.32 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.75 Total: 0.20 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.84 Total: -20.40 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.02 Total: -34.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.42 Total: -2.36 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.79 -9.53 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084530350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.150 kcal (2) G-P(sol) polarization free energy of solvation -26.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds