Wall clock time and date at job start Mon Mar 30 2020 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 120.04330 * 2 1 4 4 Cl 1.73600 * 119.97517 * 359.97438 * 3 2 1 5 5 C 1.38382 * 120.04928 * 179.97438 * 3 2 1 6 6 C 1.38291 * 120.13379 * 0.02669 * 5 3 2 7 7 C 1.38088 * 120.08961 * 359.72338 * 6 5 3 8 8 C 1.38869 * 120.04587 * 179.97438 * 2 1 3 9 9 N 1.39675 * 120.06419 * 0.02562 * 8 2 1 10 10 C 1.47449 * 110.99788 * 119.87597 * 9 8 2 11 11 C 1.54318 * 107.23131 * 123.25546 * 10 9 8 12 12 C 1.55140 * 103.01849 * 22.28608 * 11 10 9 13 13 H 1.09004 * 110.99115 * 82.43982 * 12 11 10 14 14 C 1.50709 * 110.98825 * 206.21419 * 12 11 10 15 15 H 1.07996 * 119.99481 * 118.54678 * 14 12 11 16 16 C 1.37877 * 119.99999 * 298.54585 * 14 12 11 17 17 N 1.31510 * 120.00149 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99689 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47307 * 60.00322 * 18 16 14 20 20 H 1.48495 * 109.47081 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47272 * 299.99967 * 18 16 14 22 22 C 1.47846 * 111.00028 * 240.71697 * 9 8 2 23 23 H 1.08999 * 109.47210 * 270.01635 * 1 2 3 24 24 H 1.08998 * 109.47293 * 30.01273 * 1 2 3 25 25 H 1.09000 * 109.47293 * 150.01627 * 1 2 3 26 26 H 1.08002 * 119.93674 * 180.02562 * 5 3 2 27 27 H 1.08004 * 119.95289 * 180.02562 * 6 5 3 28 28 H 1.08003 * 120.02522 * 180.27250 * 7 6 5 29 29 H 1.08998 * 109.89032 * 242.66113 * 10 9 8 30 30 H 1.08996 * 109.88568 * 3.85650 * 10 9 8 31 31 H 1.08995 * 110.70589 * 140.66742 * 11 10 9 32 32 H 1.09006 * 110.70793 * 263.90090 * 11 10 9 33 33 H 0.96998 * 119.99899 * 180.02562 * 17 16 14 34 34 H 1.08997 * 110.37447 * 332.46974 * 22 9 8 35 35 H 1.09004 * 110.36795 * 94.80904 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3315 2.7004 -0.0007 5 6 3.5829 1.1968 0.0005 6 6 4.2773 0.0009 0.0005 7 6 3.5916 -1.1978 0.0057 8 6 2.2023 -1.2021 0.0005 9 7 1.5062 -2.4130 0.0005 10 6 1.8379 -3.2131 -1.1928 11 6 2.3658 -4.5759 -0.6973 12 6 1.7709 -4.6825 0.7316 13 1 0.7430 -5.0439 0.7006 14 6 2.6239 -5.5642 1.6070 15 1 3.0879 -5.1579 2.4936 16 6 2.8119 -6.8894 1.2760 17 7 2.2473 -7.3839 0.1962 18 14 3.8686 -7.9823 2.3616 19 1 3.2884 -8.0326 3.7276 20 1 3.9113 -9.3529 1.7918 21 1 5.2456 -7.4304 2.4286 22 6 1.8270 -3.2086 1.2047 23 1 -0.3633 0.0003 1.0276 24 1 -0.3634 0.8898 -0.5140 25 1 -0.3634 -0.8901 -0.5136 26 1 4.1218 2.1328 0.0010 27 1 5.3573 0.0044 0.0014 28 1 4.1350 -2.1311 0.0102 29 1 0.9451 -3.3601 -1.8006 30 1 2.6072 -2.7073 -1.7761 31 1 1.9983 -5.3844 -1.3291 32 1 3.4553 -4.5775 -0.6623 33 1 2.3793 -8.3163 -0.0365 34 1 2.8257 -2.9638 1.5663 35 1 1.0863 -3.0319 1.9846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084530350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:41 Heat of formation + Delta-G solvation = 4.263501 kcal Electronic energy + Delta-G solvation = -17824.644502 eV Core-core repulsion = 15040.313250 eV Total energy + Delta-G solvation = -2784.331252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32880 -38.94814 -37.30485 -35.15643 -33.77341 -32.48572 -30.16792 -29.63933 -27.63049 -26.43152 -23.80309 -22.44075 -21.54871 -21.34968 -18.76922 -17.69597 -17.17900 -16.65081 -16.35038 -16.02952 -15.59479 -15.14035 -14.46664 -14.28521 -14.11102 -14.03616 -13.36629 -13.28128 -13.17369 -13.04344 -12.76558 -12.69127 -12.43322 -12.32670 -12.29321 -12.06503 -11.70545 -11.56580 -11.23726 -10.92268 -10.51267 -9.59950 -9.54778 -9.39471 -8.14524 -6.25444 0.12887 0.27271 1.13427 1.42342 1.43114 1.50781 2.41582 2.57438 3.03391 3.17580 3.86517 3.96464 4.05890 4.07180 4.34171 4.37576 4.44502 4.50892 4.59323 4.73647 4.79493 4.81491 4.85459 4.97148 5.18037 5.23323 5.23607 5.33984 5.42295 5.54883 5.58396 5.70999 5.78965 5.83435 5.93385 6.32413 6.50992 6.82717 7.42741 8.94113 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038556 B = 0.004572 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.033630 B = 6123.263677 C = 6380.054049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.069 4.069 3 C -0.040 4.040 4 Cl -0.061 7.061 5 C -0.111 4.111 6 C -0.102 4.102 7 C -0.152 4.152 8 C 0.087 3.913 9 N -0.498 5.498 10 C 0.054 3.946 11 C -0.104 4.104 12 C 0.042 3.958 13 H 0.007 0.993 14 C -0.535 4.535 15 H 0.054 0.946 16 C 0.019 3.981 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.271 1.271 22 C 0.066 3.934 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 17.240 -1.938 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 C -0.067 4.067 4 Cl -0.032 7.032 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.172 4.172 8 C -0.008 4.008 9 N -0.219 5.219 10 C -0.072 4.072 11 C -0.143 4.143 12 C 0.023 3.977 13 H 0.025 0.975 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.181 4.181 17 N -0.554 5.554 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.059 4.059 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.176 0.824 27 H 0.174 0.826 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.991 17.318 -2.053 17.468 hybrid contribution 1.178 -1.227 0.458 1.762 sum 2.169 16.091 -1.594 16.315 Atomic orbital electron populations 1.20664 0.89341 1.03197 1.02783 1.19771 0.97739 0.89944 0.99639 1.20792 0.92834 0.86464 1.06644 1.98339 1.77036 1.30896 1.96925 1.21303 0.91488 0.99935 1.00211 1.21226 1.01286 0.90607 0.98918 1.21968 0.94680 0.99583 1.00940 1.18955 0.90595 0.91142 1.00103 1.61142 1.54909 1.02542 1.03305 1.22889 0.99596 0.93176 0.91519 1.22464 0.98274 0.94738 0.98854 1.19669 0.95015 0.90315 0.92662 0.97484 1.21307 1.30970 0.95365 1.09687 0.92757 1.25700 0.96846 0.99226 0.96334 1.70068 1.44730 1.14657 1.25949 0.85679 0.79432 0.77781 0.79187 1.19669 1.20999 1.19594 1.23052 0.98374 0.93400 0.91096 0.90985 0.90527 0.91012 0.82427 0.82622 0.86593 0.90711 0.92568 0.92911 0.94486 0.92948 0.94155 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 9.37 71.23 0.67 -2.05 16 2 C -0.07 -2.00 5.90 -19.71 -0.12 -2.11 16 3 C -0.04 -1.00 6.31 22.30 0.14 -0.86 16 4 Cl -0.06 -1.29 27.29 -2.72 -0.07 -1.37 16 5 C -0.11 -2.41 9.83 22.32 0.22 -2.19 16 6 C -0.10 -2.37 10.04 22.25 0.22 -2.15 16 7 C -0.15 -4.57 7.82 22.40 0.18 -4.39 16 8 C 0.09 2.83 4.61 38.21 0.18 3.01 16 9 N -0.50 -18.48 4.11 -685.17 -2.82 -21.30 16 10 C 0.05 2.05 6.54 86.65 0.57 2.62 16 11 C -0.10 -4.82 5.64 31.77 0.18 -4.64 16 12 C 0.04 2.12 2.96 -10.15 -0.03 2.09 16 13 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 14 C -0.53 -29.01 8.55 25.60 0.22 -28.80 16 15 H 0.05 2.89 7.79 -2.91 -0.02 2.86 16 16 C 0.02 1.01 5.34 84.66 0.45 1.46 16 17 N -0.92 -52.23 12.12 21.45 0.26 -51.97 16 18 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.07 2.79 5.99 86.77 0.52 3.31 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.08 1.74 6.90 -2.39 -0.02 1.73 16 25 H 0.07 2.06 7.46 -2.39 -0.02 2.04 16 26 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 27 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.12 3.80 7.70 -2.91 -0.02 3.78 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.06 1.96 7.03 -2.39 -0.02 1.94 16 31 H 0.05 2.65 7.53 -2.39 -0.02 2.64 16 32 H 0.04 1.75 8.03 -2.38 -0.02 1.74 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.04 1.70 6.65 -2.39 -0.02 1.69 16 35 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -57.87 299.37 3.86 -54.01 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.08 Total: 10.43 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 3.39 Total: -34.69 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.56 Total: -73.27 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.37 kcal Total: -57.87 3.86 -54.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084530350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.272 kcal (2) G-P(sol) polarization free energy of solvation -57.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds