Wall clock time and date at job start Mon Mar 30 2020 07:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38133 * 120.01929 * 2 1 4 4 C 1.38241 * 120.08353 * 180.02562 * 3 2 1 5 5 C 1.38433 * 120.13572 * 359.95156 * 4 3 2 6 6 Cl 1.73604 * 119.97106 * 180.02562 * 5 4 3 7 7 C 1.38196 * 120.04865 * 0.04525 * 5 4 3 8 8 C 1.38900 * 120.02385 * 180.02562 * 2 1 3 9 9 N 1.39669 * 120.07124 * 359.95840 * 8 2 1 10 10 C 1.47904 * 110.99719 * 297.54890 * 9 8 2 11 11 C 1.53996 * 107.05686 * 214.15482 * 10 9 8 12 12 C 1.54596 * 105.13977 * 1.22524 * 11 10 9 13 13 H 1.09004 * 110.72336 * 263.59901 * 12 11 10 14 14 C 1.50694 * 110.72427 * 140.49197 * 12 11 10 15 15 H 1.07997 * 120.00333 * 241.45557 * 14 12 11 16 16 C 1.37874 * 120.00031 * 61.45568 * 14 12 11 17 17 N 1.31518 * 120.00107 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00455 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46748 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47076 * 119.99618 * 18 16 14 21 21 H 1.48497 * 109.47335 * 240.00219 * 18 16 14 22 22 C 1.48526 * 111.00025 * 180.15200 * 9 8 2 23 23 H 1.08998 * 109.46888 * 265.64006 * 1 2 3 24 24 H 1.08995 * 109.47244 * 25.64112 * 1 2 3 25 25 H 1.09002 * 109.46627 * 145.63957 * 1 2 3 26 26 H 1.07997 * 119.95934 * 0.02562 * 3 2 1 27 27 H 1.07996 * 119.93282 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.04004 * 180.25496 * 7 5 4 29 29 H 1.08996 * 109.91809 * 333.50998 * 10 9 8 30 30 H 1.09002 * 109.91797 * 94.80191 * 10 9 8 31 31 H 1.08999 * 110.31133 * 120.14370 * 11 10 9 32 32 H 1.08998 * 110.30923 * 242.21094 * 11 10 9 33 33 H 0.97000 * 120.00495 * 180.02562 * 17 16 14 34 34 H 1.08998 * 110.67030 * 278.15545 * 22 9 8 35 35 H 1.09003 * 110.66986 * 41.28551 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5806 1.1976 -0.0005 5 6 4.2769 0.0011 -0.0001 6 17 6.0129 0.0081 -0.0001 7 6 3.5911 -1.1987 0.0000 8 6 2.2021 -1.2026 -0.0005 9 7 1.5058 -2.4133 -0.0002 10 6 0.6887 -2.5545 1.2246 11 6 0.6824 -4.0495 1.5936 12 6 1.5670 -4.7328 0.5256 13 1 0.9546 -5.1449 -0.2764 14 6 2.4206 -5.8074 1.1481 15 1 3.4972 -5.7317 1.1099 16 6 1.8270 -6.8872 1.7666 17 7 0.5159 -6.9797 1.8129 18 14 2.8850 -8.2190 2.5390 19 1 4.3192 -7.8823 2.3522 20 1 2.5828 -8.3119 3.9900 21 1 2.5941 -9.5218 1.8884 22 6 2.4424 -3.5661 0.0028 23 1 -0.3633 -0.0781 1.0247 24 1 -0.3633 0.9264 -0.4447 25 1 -0.3633 -0.8484 -0.5800 26 1 1.6578 2.1311 0.0004 27 1 4.1184 2.1341 -0.0010 28 1 4.1345 -2.1320 0.0045 29 1 1.1303 -1.9739 2.0345 30 1 -0.3292 -2.2149 1.0330 31 1 1.1071 -4.1959 2.5867 32 1 -0.3328 -4.4444 1.5550 33 1 0.0983 -7.7392 2.2483 34 1 2.7990 -3.7747 -1.0059 35 1 3.2786 -3.3806 0.6769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084530352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:24 Heat of formation + Delta-G solvation = 5.327705 kcal Electronic energy + Delta-G solvation = -17820.914418 eV Core-core repulsion = 15036.629314 eV Total energy + Delta-G solvation = -2784.285104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45364 -38.87454 -37.41438 -35.22086 -33.62223 -32.87917 -30.27346 -29.57245 -27.44762 -26.63994 -23.87396 -22.53067 -21.63126 -21.08053 -18.83639 -17.78461 -16.92806 -16.69824 -16.46082 -16.23217 -15.52178 -14.91730 -14.75904 -14.39810 -14.23346 -13.76021 -13.55899 -13.49793 -13.26680 -12.97873 -12.76244 -12.64972 -12.37633 -12.27201 -12.08666 -11.94832 -11.76314 -11.65377 -11.24328 -10.83315 -10.54830 -10.48367 -9.63025 -8.84830 -8.16688 -6.26884 0.19349 0.32639 1.15488 1.39096 1.41627 1.52438 2.40316 2.56845 3.05718 3.15770 3.82615 3.92979 4.02652 4.14636 4.17111 4.31032 4.41820 4.47566 4.64266 4.73008 4.79841 4.80643 4.87781 4.90910 5.04821 5.18024 5.23236 5.28991 5.35020 5.50039 5.57987 5.70632 5.78040 5.83340 5.96161 6.29815 6.37562 6.81810 7.41251 8.92984 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.005576 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.871214 B = 5020.576020 C = 6115.247353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.134 4.134 5 C -0.026 4.026 6 Cl -0.076 7.076 7 C -0.177 4.177 8 C 0.099 3.901 9 N -0.475 5.475 10 C 0.053 3.947 11 C -0.094 4.094 12 C 0.044 3.956 13 H 0.006 0.994 14 C -0.534 4.534 15 H 0.054 0.946 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.049 3.951 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.167 0.833 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 17.335 -2.267 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.153 4.153 5 C -0.053 4.053 6 Cl -0.047 7.047 7 C -0.198 4.198 8 C 0.001 3.999 9 N -0.190 5.190 10 C -0.072 4.072 11 C -0.133 4.133 12 C 0.025 3.975 13 H 0.025 0.975 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.077 4.077 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.185 0.815 27 H 0.173 0.827 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.393 17.157 -2.657 17.526 hybrid contribution 1.154 -1.387 0.960 2.044 sum 3.548 15.770 -1.697 16.253 Atomic orbital electron populations 1.20836 0.89311 1.03628 1.02708 1.20013 0.97685 0.91147 1.01894 1.21227 0.93015 0.98080 0.97720 1.21233 0.94629 0.96709 1.02741 1.20846 0.84252 0.95060 1.05115 1.98349 1.10427 1.98970 1.96995 1.21334 0.94017 0.98104 1.06382 1.19184 0.90902 0.91523 0.98311 1.61806 1.20464 1.00612 1.36077 1.22996 0.98330 0.97163 0.88716 1.22141 0.99969 0.92221 0.98966 1.19488 0.93018 0.91522 0.93436 0.97535 1.21396 0.92963 1.06427 1.36483 0.92785 1.25699 0.96060 0.99958 0.96479 1.70086 1.09905 1.31067 1.44328 0.85574 0.79267 0.79117 0.78138 1.19236 1.20532 1.20558 1.23355 0.94438 0.89873 1.00066 0.90719 0.89224 0.91967 0.81508 0.82749 0.85594 0.93663 0.88751 0.94407 0.93439 0.92901 0.91179 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.20 71.24 0.58 -1.76 16 2 C -0.11 -2.72 5.76 -19.73 -0.11 -2.83 16 3 C -0.08 -1.68 9.68 22.25 0.22 -1.46 16 4 C -0.13 -2.92 9.83 22.32 0.22 -2.70 16 5 C -0.03 -0.70 6.32 22.31 0.14 -0.56 16 6 Cl -0.08 -1.93 28.95 -2.72 -0.08 -2.01 16 7 C -0.18 -5.70 8.65 22.42 0.19 -5.51 16 8 C 0.10 3.23 5.30 38.21 0.20 3.44 16 9 N -0.47 -17.67 4.72 -682.80 -3.22 -20.89 16 10 C 0.05 1.93 5.24 86.45 0.45 2.38 16 11 C -0.09 -4.37 5.51 31.47 0.17 -4.19 16 12 C 0.04 2.24 2.98 -10.33 -0.03 2.21 16 13 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 14 C -0.53 -29.27 8.43 25.60 0.22 -29.05 16 15 H 0.05 2.92 7.78 -2.91 -0.02 2.90 16 16 C 0.02 0.97 5.33 84.65 0.45 1.42 16 17 N -0.92 -52.44 12.44 21.45 0.27 -52.18 16 18 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.05 2.08 4.85 86.65 0.42 2.50 16 23 H 0.07 1.52 7.54 -2.39 -0.02 1.51 16 24 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 25 H 0.06 1.58 7.07 -2.39 -0.02 1.57 16 26 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 27 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 28 H 0.13 4.37 5.67 -2.91 -0.02 4.35 16 29 H 0.04 1.59 7.76 -2.39 -0.02 1.57 16 30 H 0.09 3.04 6.43 -2.39 -0.02 3.03 16 31 H 0.04 1.86 7.84 -2.39 -0.02 1.84 16 32 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.05 2.08 6.04 -2.39 -0.01 2.07 16 Total: -1.00 -59.91 295.97 3.20 -56.70 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.08 Total: 9.13 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.13 Total: -36.13 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.95 Total: -73.06 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -59.91 3.20 -56.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084530352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.032 kcal (2) G-P(sol) polarization free energy of solvation -59.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds