Wall clock time and date at job start Mon Mar 30 2020 07:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37963 * 119.79430 * 2 1 4 4 Cl 1.73600 * 120.03841 * 359.96594 * 3 2 1 5 5 C 1.38394 * 119.92680 * 179.97438 * 3 2 1 6 6 C 1.38074 * 119.87096 * 359.65902 * 5 3 2 7 7 C 1.38580 * 120.50213 * 0.51811 * 6 5 3 8 8 C 1.38428 * 119.89039 * 359.68474 * 7 6 5 9 9 N 1.39403 * 122.95716 * 179.75041 * 8 7 6 10 10 C 1.46424 * 113.13076 * 20.03141 * 9 8 7 11 11 C 1.53385 * 108.65143 * 306.64611 * 10 9 8 12 12 H 1.09001 * 109.76738 * 308.68623 * 11 10 9 13 13 C 1.52998 * 109.77279 * 187.89917 * 11 10 9 14 14 C 1.50702 * 109.47037 * 66.52347 * 13 11 10 15 15 H 1.07993 * 120.00087 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99812 * 179.97438 * 14 13 11 17 17 N 1.31509 * 119.99884 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99971 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47063 * 89.99469 * 18 16 14 20 20 H 1.48504 * 109.47149 * 209.99529 * 18 16 14 21 21 H 1.48494 * 109.47198 * 329.99611 * 18 16 14 22 22 C 1.50816 * 118.10881 * 179.97438 * 7 6 5 23 23 H 1.09007 * 109.47031 * 269.97597 * 1 2 3 24 24 H 1.09000 * 109.47798 * 29.97233 * 1 2 3 25 25 H 1.08998 * 109.47448 * 149.98118 * 1 2 3 26 26 H 1.07997 * 120.05979 * 179.89629 * 5 3 2 27 27 H 1.07991 * 119.74584 * 180.27781 * 6 5 3 28 28 H 1.00897 * 111.00351 * 254.47778 * 9 8 7 29 29 H 1.09006 * 109.60522 * 186.89550 * 10 9 8 30 30 H 1.08999 * 109.74870 * 66.47819 * 10 9 8 31 31 H 1.08995 * 109.47023 * 186.52896 * 13 11 10 32 32 H 1.09003 * 109.47128 * 306.52995 * 13 11 10 33 33 H 0.97000 * 120.00066 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.43857 * 315.30080 * 22 7 6 35 35 H 1.08995 * 109.44054 * 75.18869 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1973 0.0000 4 17 1.3201 2.6981 -0.0009 5 6 3.5764 1.2005 0.0005 6 6 4.2669 0.0048 0.0082 7 6 3.5846 -1.2015 0.0046 8 6 2.2004 -1.2111 -0.0002 9 7 1.4502 -2.3860 -0.0091 10 6 2.2053 -3.5541 0.4484 11 6 3.4974 -3.6550 -0.3720 12 1 3.2632 -3.6092 -1.4356 13 6 4.2107 -4.9708 -0.0544 14 6 3.3772 -6.1257 -0.5468 15 1 2.4334 -5.9398 -1.0376 16 6 3.8201 -7.4196 -0.3716 17 7 3.0930 -8.4274 -0.8018 18 14 5.4531 -7.7410 0.4767 19 1 5.2322 -7.8823 1.9384 20 1 6.0505 -8.9915 -0.0568 21 1 6.3748 -6.6046 0.2231 22 6 4.3927 -2.4749 0.0127 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3635 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 4.1152 2.1364 -0.0012 27 1 5.3467 0.0096 0.0131 28 1 1.0462 -2.5502 -0.9190 29 1 1.6088 -4.4549 0.3037 30 1 2.4505 -3.4436 1.5047 31 1 5.1817 -4.9863 -0.5493 32 1 4.3507 -5.0572 1.0232 33 1 3.4045 -9.3377 -0.6782 34 1 5.2096 -2.3907 -0.7040 35 1 4.8011 -2.6390 1.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084786898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:42 Heat of formation + Delta-G solvation = -1.518933 kcal Electronic energy + Delta-G solvation = -17615.588512 eV Core-core repulsion = 14831.006515 eV Total energy + Delta-G solvation = -2784.581997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33836 -37.29802 -36.01416 -34.27139 -32.94339 -31.31564 -30.31830 -27.52256 -26.64209 -24.28035 -23.32820 -21.37387 -20.53062 -19.20840 -17.20310 -16.89709 -16.09465 -15.42135 -14.76495 -14.33852 -14.24025 -13.94654 -13.28900 -13.20469 -12.93789 -12.49091 -12.38473 -12.33255 -12.10483 -11.83111 -11.64648 -11.44423 -11.12213 -10.82459 -10.76939 -10.62087 -10.21098 -9.98730 -9.67169 -9.29609 -9.08816 -8.60403 -8.40271 -7.71340 -6.10845 -4.09479 1.22003 1.34415 2.13304 3.26027 3.34294 3.36545 3.61229 4.30886 4.39319 4.81148 4.92130 4.95456 5.20950 5.26693 5.41525 5.45569 5.57667 5.62486 5.70032 5.76764 5.92218 6.05502 6.09806 6.24113 6.27073 6.37097 6.45518 6.50999 6.66229 6.70340 6.81001 7.13061 7.28061 7.37814 7.55689 7.71326 8.44907 8.92282 9.51535 11.02195 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.043599 B = 0.004344 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.062802 B = 6443.850473 C = 6967.668038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.089 4.089 3 C -0.029 4.029 4 Cl -0.079 7.079 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.108 4.108 8 C 0.134 3.866 9 N -0.638 5.638 10 C 0.067 3.933 11 C -0.105 4.105 12 H 0.067 0.933 13 C -0.005 4.005 14 C -0.521 4.521 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.081 4.081 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.357 0.643 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 18.720 1.714 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.092 4.092 3 C -0.056 4.056 4 Cl -0.050 7.050 5 C -0.151 4.151 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.035 3.965 9 N -0.266 5.266 10 C -0.061 4.061 11 C -0.125 4.125 12 H 0.085 0.915 13 C -0.042 4.042 14 C -0.559 4.559 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.118 4.118 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.185 0.815 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.335 18.693 2.280 18.879 hybrid contribution 1.420 -0.316 -0.210 1.470 sum 0.085 18.377 2.070 18.493 Atomic orbital electron populations 1.20661 0.90112 1.02651 1.02714 1.19622 0.96825 0.90062 1.02732 1.20500 0.92089 0.86097 1.06953 1.98330 1.77008 1.32645 1.97045 1.20818 0.91823 0.98767 1.03674 1.20909 0.99798 0.90986 1.00132 1.20280 0.93316 0.96110 1.01435 1.18250 0.89908 0.90314 0.98039 1.57133 1.35334 1.02433 1.31684 1.22229 0.93861 0.91164 0.98837 1.21710 0.96028 0.95186 0.99618 0.91495 1.19540 0.96180 0.92151 0.96375 1.21082 1.06794 0.89373 1.38617 0.90887 1.25013 0.96950 0.96247 0.95114 1.69904 1.38182 0.98978 1.46935 0.86807 0.84769 0.77808 0.80067 1.20263 1.21414 1.19081 1.20770 0.97702 0.91131 1.02209 0.90981 0.91775 0.90776 0.85469 0.85488 0.81520 0.88035 0.91085 0.96402 0.96773 0.92685 0.90745 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.30 36.00 0.33 -0.89 16 2 C -0.09 -1.22 5.91 -104.23 -0.62 -1.83 16 3 C -0.03 -0.38 6.30 -39.62 -0.25 -0.63 16 4 Cl -0.08 -0.90 27.26 -51.86 -1.41 -2.31 16 5 C -0.13 -1.59 9.84 -39.58 -0.39 -1.98 16 6 C -0.10 -1.26 9.63 -39.52 -0.38 -1.64 16 7 C -0.11 -1.59 5.74 -104.37 -0.60 -2.19 16 8 C 0.13 1.99 6.11 -83.86 -0.51 1.48 16 9 N -0.64 -9.57 5.38 -58.51 -0.31 -9.89 16 10 C 0.07 1.15 5.83 -3.88 -0.02 1.13 16 11 C -0.11 -1.92 2.34 -90.40 -0.21 -2.13 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 C 0.00 -0.10 3.50 -27.88 -0.10 -0.20 16 14 C -0.52 -13.89 8.88 -34.44 -0.31 -14.20 16 15 H 0.07 2.08 7.47 -52.49 -0.39 1.69 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 18 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 22 C -0.08 -1.26 5.15 -27.80 -0.14 -1.40 16 23 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.06 0.69 6.87 -51.93 -0.36 0.33 16 25 H 0.07 0.84 7.08 -51.93 -0.37 0.47 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.36 4.96 8.50 -39.29 -0.33 4.63 16 29 H 0.10 1.94 6.93 -51.93 -0.36 1.58 16 30 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -28.47 295.49 -9.16 -37.63 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.70 Total: 2.58 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -3.29 Total: -22.68 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.46 Total: -36.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.41 Total: -2.31 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.47 -9.16 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084786898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.116 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds