Wall clock time and date at job start Mon Mar 30 2020 07:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37963 * 119.79430 * 2 1 4 4 Cl 1.73600 * 120.03841 * 359.96594 * 3 2 1 5 5 C 1.38394 * 119.92680 * 179.97438 * 3 2 1 6 6 C 1.38074 * 119.87096 * 359.65902 * 5 3 2 7 7 C 1.38580 * 120.50213 * 0.51811 * 6 5 3 8 8 C 1.38428 * 119.89039 * 359.68474 * 7 6 5 9 9 N 1.39403 * 122.95716 * 179.75041 * 8 7 6 10 10 C 1.46424 * 113.13076 * 20.03141 * 9 8 7 11 11 C 1.53385 * 108.65143 * 306.64611 * 10 9 8 12 12 H 1.09001 * 109.76738 * 308.68623 * 11 10 9 13 13 C 1.52998 * 109.77279 * 187.89917 * 11 10 9 14 14 C 1.50702 * 109.47037 * 66.52347 * 13 11 10 15 15 H 1.07993 * 120.00087 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99812 * 179.97438 * 14 13 11 17 17 N 1.31509 * 119.99884 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99971 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47063 * 89.99469 * 18 16 14 20 20 H 1.48504 * 109.47149 * 209.99529 * 18 16 14 21 21 H 1.48494 * 109.47198 * 329.99611 * 18 16 14 22 22 C 1.50816 * 118.10881 * 179.97438 * 7 6 5 23 23 H 1.09007 * 109.47031 * 269.97597 * 1 2 3 24 24 H 1.09000 * 109.47798 * 29.97233 * 1 2 3 25 25 H 1.08998 * 109.47448 * 149.98118 * 1 2 3 26 26 H 1.07997 * 120.05979 * 179.89629 * 5 3 2 27 27 H 1.07991 * 119.74584 * 180.27781 * 6 5 3 28 28 H 1.00897 * 111.00351 * 254.47778 * 9 8 7 29 29 H 1.09006 * 109.60522 * 186.89550 * 10 9 8 30 30 H 1.08999 * 109.74870 * 66.47819 * 10 9 8 31 31 H 1.08995 * 109.47023 * 186.52896 * 13 11 10 32 32 H 1.09003 * 109.47128 * 306.52995 * 13 11 10 33 33 H 0.97000 * 120.00066 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.43857 * 315.30080 * 22 7 6 35 35 H 1.08995 * 109.44054 * 75.18869 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1973 0.0000 4 17 1.3201 2.6981 -0.0009 5 6 3.5764 1.2005 0.0005 6 6 4.2669 0.0048 0.0082 7 6 3.5846 -1.2015 0.0046 8 6 2.2004 -1.2111 -0.0002 9 7 1.4502 -2.3860 -0.0091 10 6 2.2053 -3.5541 0.4484 11 6 3.4974 -3.6550 -0.3720 12 1 3.2632 -3.6092 -1.4356 13 6 4.2107 -4.9708 -0.0544 14 6 3.3772 -6.1257 -0.5468 15 1 2.4334 -5.9398 -1.0376 16 6 3.8201 -7.4196 -0.3716 17 7 3.0930 -8.4274 -0.8018 18 14 5.4531 -7.7410 0.4767 19 1 5.2322 -7.8823 1.9384 20 1 6.0505 -8.9915 -0.0568 21 1 6.3748 -6.6046 0.2231 22 6 4.3927 -2.4749 0.0127 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3635 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 4.1152 2.1364 -0.0012 27 1 5.3467 0.0096 0.0131 28 1 1.0462 -2.5502 -0.9190 29 1 1.6088 -4.4549 0.3037 30 1 2.4505 -3.4436 1.5047 31 1 5.1817 -4.9863 -0.5493 32 1 4.3507 -5.0572 1.0232 33 1 3.4045 -9.3377 -0.6782 34 1 5.2096 -2.3907 -0.7040 35 1 4.8011 -2.6390 1.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084786898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:41 Heat of formation + Delta-G solvation = -16.718208 kcal Electronic energy + Delta-G solvation = -17616.247602 eV Core-core repulsion = 14831.006515 eV Total energy + Delta-G solvation = -2785.241087 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46112 -38.44287 -37.08871 -35.56675 -34.67111 -32.84481 -31.44853 -29.16430 -27.63982 -25.54561 -24.96293 -22.59410 -21.79540 -20.61098 -18.94355 -18.23129 -17.26891 -16.64720 -16.19802 -15.94346 -15.37264 -15.13258 -14.82573 -14.39271 -14.19275 -13.97179 -13.70909 -13.57410 -13.29549 -13.24069 -12.91678 -12.65924 -12.45992 -12.35774 -11.99977 -11.82792 -11.69430 -11.63528 -11.44880 -11.07621 -10.74527 -10.36701 -9.41316 -8.85947 -8.25923 -6.28790 0.18947 0.33205 1.17231 1.37734 1.39293 1.50106 2.38072 2.59069 3.07929 3.13441 3.77701 3.79729 3.95263 4.01645 4.14745 4.32627 4.43046 4.45614 4.70395 4.75166 4.78947 4.83375 4.86181 4.97811 5.01982 5.21070 5.26832 5.29387 5.37822 5.39540 5.51600 5.56661 5.68193 5.72849 6.13627 6.31209 6.39331 6.78454 7.35464 8.90380 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.043599 B = 0.004344 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.062802 B = 6443.850473 C = 6967.668038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C -0.036 4.036 4 Cl -0.066 7.066 5 C -0.126 4.126 6 C -0.097 4.097 7 C -0.123 4.123 8 C 0.112 3.888 9 N -0.633 5.633 10 C 0.078 3.922 11 C -0.100 4.100 12 H 0.053 0.947 13 C -0.001 4.001 14 C -0.521 4.521 15 H 0.038 0.962 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.944 3.056 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.245 1.245 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.360 0.640 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 21.109 2.495 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.064 4.064 4 Cl -0.037 7.037 5 C -0.145 4.145 6 C -0.115 4.115 7 C -0.126 4.126 8 C 0.013 3.987 9 N -0.261 5.261 10 C -0.051 4.051 11 C -0.120 4.120 12 H 0.071 0.929 13 C -0.039 4.039 14 C -0.559 4.559 15 H 0.056 0.944 16 C -0.192 4.192 17 N -0.593 5.593 18 Si 0.769 3.231 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.169 1.169 22 C -0.110 4.110 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.187 0.813 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.367 21.121 3.062 21.345 hybrid contribution 0.790 -0.959 -0.506 1.342 sum 1.157 20.162 2.556 20.357 Atomic orbital electron populations 1.20667 0.89260 1.03103 1.02895 1.19771 0.97614 0.89976 1.02587 1.20675 0.92722 0.86428 1.06531 1.98337 1.76821 1.31567 1.96946 1.21138 0.91607 0.99668 1.02094 1.21148 1.01059 0.90230 0.99081 1.20300 0.93190 0.96478 1.02651 1.18391 0.90360 0.90322 0.99601 1.57088 1.35047 1.01883 1.32084 1.21953 0.93283 0.91160 0.98685 1.21558 0.96776 0.94731 0.98963 0.92862 1.19476 0.95714 0.92339 0.96361 1.21417 1.05984 0.91072 1.37391 0.94410 1.25947 1.00978 0.96072 0.96155 1.70062 1.40522 0.99507 1.49188 0.85741 0.80258 0.78122 0.79026 1.19377 1.21497 1.16877 1.20646 0.97386 0.90159 1.02771 0.90867 0.90789 0.90877 0.82974 0.83038 0.81265 0.90816 0.91145 0.96116 0.96094 0.92700 0.89538 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.30 71.23 0.66 -1.62 16 2 C -0.10 -2.47 5.91 -19.61 -0.12 -2.59 16 3 C -0.04 -0.85 6.30 22.24 0.14 -0.71 16 4 Cl -0.07 -1.32 27.26 -2.72 -0.07 -1.40 16 5 C -0.13 -2.63 9.84 22.27 0.22 -2.41 16 6 C -0.10 -2.14 9.63 22.31 0.21 -1.92 16 7 C -0.12 -3.36 5.74 -19.70 -0.11 -3.47 16 8 C 0.11 3.20 6.11 38.30 0.23 3.43 16 9 N -0.63 -19.05 5.38 -339.03 -1.82 -20.87 16 10 C 0.08 2.73 5.83 86.52 0.50 3.23 16 11 C -0.10 -3.63 2.34 -10.65 -0.02 -3.65 16 12 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 13 C 0.00 -0.04 3.50 29.85 0.10 0.06 16 14 C -0.52 -28.47 8.88 25.60 0.23 -28.24 16 15 H 0.04 2.27 7.47 -2.91 -0.02 2.24 16 16 C 0.01 0.29 5.47 84.66 0.46 0.75 16 17 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 18 Si 0.94 43.08 27.47 68.60 1.88 44.96 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.25 -10.28 6.54 99.48 0.65 -9.62 16 22 C -0.07 -2.11 5.15 29.90 0.15 -1.96 16 23 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.07 1.47 6.87 -2.39 -0.02 1.45 16 25 H 0.07 1.62 7.08 -2.39 -0.02 1.60 16 26 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.15 2.57 8.06 -2.92 -0.02 2.54 16 28 H 0.36 10.23 8.50 -89.70 -0.76 9.47 16 29 H 0.07 2.97 6.93 -2.38 -0.02 2.95 16 30 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 31 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 32 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 Total: -1.00 -61.64 295.49 3.24 -58.41 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.28 Total: 16.29 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 2.67 Total: -39.09 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.53 Total: -79.17 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.40 kcal Total: -61.64 3.24 -58.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084786898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.689 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds