Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99697 * 2 1 4 4 H 1.48497 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46963 * 299.99850 * 3 2 1 6 6 H 1.48506 * 109.47331 * 59.99809 * 3 2 1 7 7 C 1.37865 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00611 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00320 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47569 * 185.22527 * 9 7 2 11 11 C 1.47895 * 111.00234 * 175.75475 * 10 9 7 12 12 C 1.53996 * 107.22792 * 214.25294 * 11 10 9 13 13 C 1.54590 * 105.13781 * 1.12901 * 12 11 10 14 14 H 1.09000 * 110.72318 * 263.59314 * 13 12 11 15 15 C 1.50705 * 110.72459 * 140.49473 * 13 12 11 16 16 C 1.38239 * 119.98316 * 301.17661 * 15 13 12 17 17 C 1.38221 * 120.00991 * 179.72733 * 16 15 13 18 18 C 1.38350 * 119.98597 * 0.54805 * 17 16 15 19 19 Cl 1.73602 * 120.01296 * 179.70454 * 18 17 16 20 20 C 1.38350 * 119.97476 * 359.72892 * 18 17 16 21 21 C 1.38212 * 119.98713 * 359.97438 * 20 18 17 22 22 C 1.48814 * 111.18263 * 58.41771 * 10 9 7 23 23 H 0.96998 * 120.00415 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47131 * 65.22170 * 9 7 2 25 25 H 1.09008 * 109.46910 * 305.22339 * 9 7 2 26 26 H 1.09002 * 109.91959 * 94.80356 * 11 10 9 27 27 H 1.09002 * 109.92011 * 333.70923 * 11 10 9 28 28 H 1.09003 * 110.30909 * 120.04136 * 12 11 10 29 29 H 1.08996 * 110.31352 * 242.20680 * 12 11 10 30 30 H 1.08000 * 119.99612 * 0.02562 * 16 15 13 31 31 H 1.08000 * 120.00678 * 180.27100 * 17 16 15 32 32 H 1.08004 * 120.00579 * 179.97438 * 20 18 17 33 33 H 1.07995 * 119.99701 * 180.02562 * 21 20 18 34 34 H 1.08996 * 110.52502 * 41.07803 * 22 10 9 35 35 H 1.08995 * 110.84367 * 278.08945 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2007 -3.6127 0.1273 11 6 1.4904 -4.9056 0.2328 12 6 2.3184 -5.8059 1.1684 13 6 3.5194 -4.9367 1.6064 14 1 4.3909 -5.1415 0.9846 15 6 3.8397 -5.1640 3.0614 16 6 2.8801 -4.9206 4.0262 17 6 3.1714 -5.1343 5.3604 18 6 4.4273 -5.5809 5.7310 19 17 4.7965 -5.8421 7.4070 20 6 5.3891 -5.8188 4.7653 21 6 5.0947 -5.6107 3.4310 22 6 3.0061 -3.4935 1.3730 23 1 -0.4851 0.8400 0.0004 24 1 0.6968 -2.5987 -0.9327 25 1 0.5558 -2.5173 0.8398 26 1 1.4106 -5.3669 -0.7516 27 1 0.4960 -4.7500 0.6513 28 1 1.7257 -6.0968 2.0357 29 1 2.6661 -6.6895 0.6333 30 1 1.9010 -4.5681 3.7372 31 1 2.4203 -4.9483 6.1138 32 1 6.3698 -6.1671 5.0541 33 1 5.8452 -5.7967 2.6771 34 1 2.3794 -3.1691 2.2036 35 1 3.8405 -2.8067 1.2311 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111307135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = 12.316789 kcal Electronic energy + Delta-G solvation = -17347.725196 eV Core-core repulsion = 14563.743161 eV Total energy + Delta-G solvation = -2783.982035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81135 -37.85549 -36.47019 -33.43186 -32.02158 -31.12439 -29.77411 -27.71021 -26.23782 -23.31382 -22.81160 -21.90030 -20.00586 -19.77254 -17.24713 -16.44368 -15.71688 -15.46534 -14.82418 -14.65927 -14.11239 -13.63283 -13.55965 -13.24357 -12.93770 -12.87621 -12.19583 -11.92058 -11.82985 -11.62451 -11.34579 -11.05560 -10.92897 -10.78174 -10.67872 -10.60198 -10.42729 -10.21576 -9.88069 -9.13421 -9.08025 -8.51193 -8.48135 -7.34800 -6.06101 -4.07832 1.10376 1.25112 2.04808 3.29297 3.36887 3.41657 3.57682 4.40661 4.62074 4.73929 4.82258 5.09350 5.16777 5.30073 5.31093 5.32190 5.38393 5.49231 5.68850 5.77958 5.90080 5.97072 6.11623 6.16261 6.24157 6.31881 6.42311 6.50683 6.67751 6.71542 6.77207 7.17424 7.32246 7.73966 7.95676 8.14783 8.48306 9.00796 9.57357 11.05141 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.004457 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.783557 B = 6280.895055 C = 6994.942329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.184 3.816 10 N -0.518 5.518 11 C 0.032 3.968 12 C -0.119 4.119 13 C -0.064 4.064 14 H 0.088 0.912 15 C -0.054 4.054 16 C -0.100 4.100 17 C -0.108 4.108 18 C -0.044 4.044 19 Cl -0.082 7.082 20 C -0.111 4.111 21 C -0.106 4.106 22 C 0.065 3.935 23 H 0.261 0.739 24 H 0.029 0.971 25 H -0.004 1.004 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.043 0.957 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.946 -13.263 9.892 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.058 3.942 10 N -0.242 5.242 11 C -0.096 4.096 12 C -0.157 4.157 13 C -0.083 4.083 14 H 0.106 0.894 15 C -0.055 4.055 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.070 4.070 19 Cl -0.053 7.053 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.063 4.063 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.014 0.986 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.061 0.939 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.134 -13.131 9.558 18.164 hybrid contribution -0.216 0.991 0.889 1.348 sum 7.917 -12.139 10.446 17.866 Atomic orbital electron populations 1.69965 1.06076 1.26711 1.50977 1.24984 0.94850 0.99352 0.95304 0.86466 0.80130 0.83444 0.77559 1.19618 1.20945 1.21073 1.21202 0.93525 0.89990 1.50237 0.91839 1.19898 0.90230 0.87683 0.96352 1.64895 1.23586 1.01972 1.33773 1.22833 0.96089 0.92072 0.98641 1.22493 0.95961 0.98068 0.99142 1.21246 0.99040 0.97513 0.90492 0.89369 1.20030 0.93358 0.96270 0.95805 1.21073 1.00189 0.98993 0.91568 1.21038 0.95196 0.99587 0.96825 1.20882 0.95936 1.05425 0.84787 1.98354 1.94802 1.95297 1.16848 1.20991 0.98817 1.00927 0.92192 1.21050 0.96587 0.99566 0.95241 1.23083 0.97961 0.92996 0.92285 0.92945 0.95277 0.98572 0.91397 0.94456 0.91801 0.91487 0.84920 0.85120 0.85223 0.85082 0.93891 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.27 8.55 -34.44 -0.29 -14.56 16 8 H 0.06 1.76 7.06 -52.48 -0.37 1.39 16 9 C 0.18 4.77 4.61 -4.98 -0.02 4.75 16 10 N -0.52 -11.04 5.35 -231.65 -1.24 -12.28 16 11 C 0.03 0.56 6.69 -2.76 -0.02 0.55 16 12 C -0.12 -1.66 6.42 -25.38 -0.16 -1.83 16 13 C -0.06 -0.93 3.27 -89.91 -0.29 -1.22 16 14 H 0.09 1.21 7.95 -51.93 -0.41 0.80 16 15 C -0.05 -0.71 4.94 -104.62 -0.52 -1.23 16 16 C -0.10 -1.32 8.16 -39.59 -0.32 -1.64 16 17 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 18 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 19 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.39 16 20 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 21 C -0.11 -1.22 9.68 -39.59 -0.38 -1.61 16 22 C 0.06 1.22 5.12 -1.74 -0.01 1.22 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.00 -0.10 7.98 -51.92 -0.41 -0.51 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.67 7.66 -51.93 -0.40 0.28 16 28 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.13 1.78 7.28 -52.49 -0.38 1.40 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.13 1.25 7.98 -52.49 -0.42 0.83 16 34 H 0.04 0.86 6.71 -51.93 -0.35 0.51 16 35 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -29.43 303.33 -10.35 -39.78 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.75 Total: -2.25 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -3.15 Total: -18.14 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.50 Total: -38.11 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.43 -10.35 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111307135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.098 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds