Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99697 * 2 1 4 4 H 1.48497 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46963 * 299.99850 * 3 2 1 6 6 H 1.48506 * 109.47331 * 59.99809 * 3 2 1 7 7 C 1.37865 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00611 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00320 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47569 * 185.22527 * 9 7 2 11 11 C 1.47895 * 111.00234 * 175.75475 * 10 9 7 12 12 C 1.53996 * 107.22792 * 214.25294 * 11 10 9 13 13 C 1.54590 * 105.13781 * 1.12901 * 12 11 10 14 14 H 1.09000 * 110.72318 * 263.59314 * 13 12 11 15 15 C 1.50705 * 110.72459 * 140.49473 * 13 12 11 16 16 C 1.38239 * 119.98316 * 301.17661 * 15 13 12 17 17 C 1.38221 * 120.00991 * 179.72733 * 16 15 13 18 18 C 1.38350 * 119.98597 * 0.54805 * 17 16 15 19 19 Cl 1.73602 * 120.01296 * 179.70454 * 18 17 16 20 20 C 1.38350 * 119.97476 * 359.72892 * 18 17 16 21 21 C 1.38212 * 119.98713 * 359.97438 * 20 18 17 22 22 C 1.48814 * 111.18263 * 58.41771 * 10 9 7 23 23 H 0.96998 * 120.00415 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47131 * 65.22170 * 9 7 2 25 25 H 1.09008 * 109.46910 * 305.22339 * 9 7 2 26 26 H 1.09002 * 109.91959 * 94.80356 * 11 10 9 27 27 H 1.09002 * 109.92011 * 333.70923 * 11 10 9 28 28 H 1.09003 * 110.30909 * 120.04136 * 12 11 10 29 29 H 1.08996 * 110.31352 * 242.20680 * 12 11 10 30 30 H 1.08000 * 119.99612 * 0.02562 * 16 15 13 31 31 H 1.08000 * 120.00678 * 180.27100 * 17 16 15 32 32 H 1.08004 * 120.00579 * 179.97438 * 20 18 17 33 33 H 1.07995 * 119.99701 * 180.02562 * 21 20 18 34 34 H 1.08996 * 110.52502 * 41.07803 * 22 10 9 35 35 H 1.08995 * 110.84367 * 278.08945 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2007 -3.6127 0.1273 11 6 1.4904 -4.9056 0.2328 12 6 2.3184 -5.8059 1.1684 13 6 3.5194 -4.9367 1.6064 14 1 4.3909 -5.1415 0.9846 15 6 3.8397 -5.1640 3.0614 16 6 2.8801 -4.9206 4.0262 17 6 3.1714 -5.1343 5.3604 18 6 4.4273 -5.5809 5.7310 19 17 4.7965 -5.8421 7.4070 20 6 5.3891 -5.8188 4.7653 21 6 5.0947 -5.6107 3.4310 22 6 3.0061 -3.4935 1.3730 23 1 -0.4851 0.8400 0.0004 24 1 0.6968 -2.5987 -0.9327 25 1 0.5558 -2.5173 0.8398 26 1 1.4106 -5.3669 -0.7516 27 1 0.4960 -4.7500 0.6513 28 1 1.7257 -6.0968 2.0357 29 1 2.6661 -6.6895 0.6333 30 1 1.9010 -4.5681 3.7372 31 1 2.4203 -4.9483 6.1138 32 1 6.3698 -6.1671 5.0541 33 1 5.8452 -5.7967 2.6771 34 1 2.3794 -3.1691 2.2036 35 1 3.8405 -2.8067 1.2311 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111307135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -4.322503 kcal Electronic energy + Delta-G solvation = -17348.446729 eV Core-core repulsion = 14563.743161 eV Total energy + Delta-G solvation = -2784.703569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89512 -39.16754 -37.40164 -35.29473 -33.61045 -32.03617 -31.19758 -29.05319 -28.12585 -24.81548 -23.94712 -23.17930 -21.64965 -20.94388 -18.52030 -18.17536 -16.97431 -16.91924 -16.23323 -16.03087 -15.48130 -14.93823 -14.55028 -14.49304 -14.38212 -14.32393 -13.77832 -13.58515 -12.99922 -12.94323 -12.72825 -12.55517 -12.52665 -12.32998 -11.94355 -11.83488 -11.81429 -11.75843 -11.44179 -11.17282 -10.65743 -9.99083 -9.49345 -9.11193 -8.24078 -6.34364 0.15186 0.34258 1.15861 1.39264 1.39782 1.53403 2.38351 2.62855 3.09683 3.29907 3.71485 3.85499 3.93709 3.97611 4.03232 4.27210 4.37566 4.40763 4.49317 4.70901 4.75594 4.84045 4.90954 4.99161 5.04009 5.06650 5.19291 5.23008 5.26626 5.32228 5.33821 5.61555 5.67302 5.84403 5.96843 6.22104 6.53197 6.82811 7.36343 8.88018 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.004457 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.783557 B = 6280.895055 C = 6994.942329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.200 3.800 10 N -0.528 5.528 11 C 0.028 3.972 12 C -0.108 4.108 13 C -0.047 4.047 14 H 0.104 0.896 15 C -0.067 4.067 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.049 4.049 19 Cl -0.074 7.074 20 C -0.108 4.108 21 C -0.101 4.101 22 C 0.064 3.936 23 H 0.265 0.735 24 H 0.001 0.999 25 H -0.034 1.034 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.024 0.976 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -14.143 10.547 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.252 5.252 11 C -0.101 4.101 12 C -0.146 4.146 13 C -0.066 4.066 14 H 0.122 0.878 15 C -0.067 4.067 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.076 4.076 19 Cl -0.045 7.045 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.064 4.064 23 H 0.074 0.926 24 H 0.019 0.981 25 H -0.016 1.016 26 H 0.097 0.903 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.042 0.958 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.356 -14.034 10.217 20.213 hybrid contribution -0.919 1.217 0.728 1.690 sum 9.438 -12.816 10.945 19.316 Atomic orbital electron populations 1.70090 1.07758 1.27893 1.51709 1.25908 0.95723 1.03222 0.94637 0.85356 0.79042 0.78581 0.77813 1.18642 1.20225 1.20388 1.21495 0.93614 0.91119 1.50277 0.91904 1.19527 0.90256 0.89318 0.93610 1.64771 1.22923 1.02066 1.35469 1.22944 0.95863 0.90988 1.00265 1.22456 0.95243 0.98018 0.98841 1.21090 0.99506 0.93988 0.92052 0.87767 1.19932 0.94339 0.97811 0.94667 1.21047 0.99961 0.99767 0.92327 1.21144 0.95903 0.99673 0.96598 1.21047 0.95954 1.05064 0.85504 1.98359 1.94696 1.95202 1.16220 1.21286 0.99603 0.99994 0.91782 1.21292 0.96102 0.98373 0.96094 1.23048 0.96754 0.96121 0.90487 0.92634 0.98103 1.01597 0.90334 0.95852 0.90934 0.88567 0.86223 0.84263 0.82840 0.82648 0.95762 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.44 0.28 -56.42 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.53 -30.22 8.55 25.60 0.22 -30.00 16 8 H 0.06 3.54 7.06 -2.91 -0.02 3.51 16 9 C 0.20 10.87 4.61 85.56 0.39 11.26 16 10 N -0.53 -23.06 5.35 -886.80 -4.74 -27.80 16 11 C 0.03 0.97 6.69 86.45 0.58 1.55 16 12 C -0.11 -2.83 6.42 31.47 0.20 -2.63 16 13 C -0.05 -1.30 3.27 -10.33 -0.03 -1.34 16 14 H 0.10 2.56 7.95 -2.39 -0.02 2.54 16 15 C -0.07 -1.64 4.94 -19.86 -0.10 -1.74 16 16 C -0.11 -2.90 8.16 22.27 0.18 -2.72 16 17 C -0.11 -2.65 9.83 22.29 0.22 -2.43 16 18 C -0.05 -1.06 6.32 22.32 0.14 -0.91 16 19 Cl -0.07 -1.44 28.96 -2.72 -0.08 -1.52 16 20 C -0.11 -2.06 9.83 22.29 0.22 -1.84 16 21 C -0.10 -2.00 9.68 22.27 0.22 -1.79 16 22 C 0.06 2.45 5.12 86.60 0.44 2.89 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H -0.03 -1.99 7.98 -2.38 -0.02 -2.01 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.02 0.87 7.66 -2.39 -0.02 0.85 16 28 H 0.07 1.80 7.07 -2.39 -0.02 1.78 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.12 3.32 7.28 -2.91 -0.02 3.30 16 31 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.16 2.31 7.98 -2.91 -0.02 2.29 16 34 H 0.02 1.01 6.71 -2.39 -0.02 0.99 16 35 H 0.06 2.62 7.48 -2.39 -0.02 2.60 16 Total: -1.00 -64.56 303.33 1.70 -62.86 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.07 Total: 5.39 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.14 Total: -29.05 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -4.46 Total: -84.23 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -64.56 1.70 -62.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111307135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.538 kcal (2) G-P(sol) polarization free energy of solvation -64.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds