Wall clock time and date at job start Mon Mar 30 2020 07:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33881 * 125.80971 * 2 1 4 4 C 1.32352 * 109.13795 * 180.23486 * 3 2 1 5 5 S 1.76248 * 141.95378 * 179.79495 * 4 3 2 6 6 C 1.75782 * 90.70239 * 179.97438 * 5 4 3 7 7 C 1.30913 * 109.81370 * 359.97438 * 6 5 4 8 8 N 1.35152 * 108.82420 * 359.77262 * 4 3 2 9 9 C 1.34334 * 125.80549 * 179.83390 * 2 1 3 10 10 C 1.50700 * 126.43801 * 0.04062 * 9 2 1 11 11 N 1.46911 * 109.46831 * 269.68269 * 10 9 2 12 12 C 1.46902 * 110.99614 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 324.99463 * 12 11 10 14 14 C 1.52997 * 109.47094 * 85.00357 * 12 11 10 15 15 C 1.50706 * 109.46577 * 205.00147 * 12 11 10 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 H 1.09006 * 109.47403 * 270.16485 * 1 2 3 24 24 H 1.09008 * 109.47021 * 30.16258 * 1 2 3 25 25 H 1.08997 * 109.47389 * 150.16059 * 1 2 3 26 26 H 1.07997 * 125.09467 * 179.97438 * 6 5 4 27 27 H 1.08008 * 121.83236 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47347 * 149.68721 * 10 9 2 29 29 H 1.09000 * 109.47418 * 29.68028 * 10 9 2 30 30 H 1.00896 * 110.99617 * 303.95659 * 11 10 9 31 31 H 1.09002 * 109.47153 * 299.99508 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99681 * 14 12 11 34 34 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2903 1.0857 0.0000 4 6 3.5581 0.7060 -0.0051 5 16 5.1994 1.3484 -0.0129 6 6 5.8601 -0.2805 -0.0133 7 6 4.8855 -1.1547 -0.0074 8 7 3.6089 -0.6445 -0.0035 9 6 2.2928 -1.0895 0.0032 10 6 1.8332 -2.5247 0.0065 11 7 1.6904 -2.9899 1.3926 12 6 1.2422 -4.3882 1.4350 13 1 0.5590 -4.5760 0.6067 14 6 2.4533 -5.3157 1.3179 15 6 0.5338 -4.6492 2.7394 16 1 0.4276 -3.8558 3.4644 17 6 0.0222 -5.9012 3.0074 18 7 -0.5955 -6.1291 4.1459 19 14 0.2077 -7.2739 1.7543 20 1 1.4727 -8.0089 2.0088 21 1 -0.9401 -8.2089 1.8708 22 1 0.2379 -6.6953 0.3870 23 1 -0.3634 0.0030 1.0277 24 1 -0.3633 0.8886 -0.5164 25 1 -0.3634 -0.8914 -0.5113 26 1 6.9123 -0.5238 -0.0178 27 1 5.0742 -2.2181 -0.0062 28 1 2.5676 -3.1426 -0.5103 29 1 0.8724 -2.5997 -0.5028 30 1 2.5515 -2.8701 1.9047 31 1 2.9656 -5.1269 0.3745 32 1 2.1207 -6.3533 1.3498 33 1 3.1364 -5.1278 2.1463 34 1 -0.9551 -7.0100 4.3346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134971457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:34 Heat of formation + Delta-G solvation = 104.225251 kcal Electronic energy + Delta-G solvation = -17656.174059 eV Core-core repulsion = 14910.513931 eV Total energy + Delta-G solvation = -2745.660128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.61438 -36.89811 -36.38023 -32.90495 -31.40236 -31.11066 -29.14663 -26.80999 -25.23278 -24.49773 -23.60299 -20.48150 -20.30971 -19.88090 -18.11104 -16.73312 -16.15152 -15.87458 -15.18930 -14.88029 -14.61932 -14.06450 -13.71885 -13.24514 -13.07018 -12.78255 -12.54699 -12.40719 -12.17210 -11.95482 -11.58858 -11.47301 -11.32526 -11.11846 -10.64781 -10.38461 -10.20821 -10.00667 -9.59779 -9.24374 -8.64498 -8.60599 -7.70627 -7.49882 -6.08844 -4.06909 0.82785 0.86956 1.52248 2.20137 2.54617 2.94062 3.20135 3.29404 3.33869 4.35046 4.37886 4.62813 4.94273 4.96810 5.12385 5.20576 5.20839 5.32448 5.61173 5.76392 5.96205 6.02143 6.06015 6.13426 6.18361 6.30692 6.38227 6.60964 6.70579 6.89078 6.98635 7.60456 7.77711 7.82659 8.13537 8.62615 9.03121 9.52774 11.04652 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.004888 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.079442 B = 5726.403766 C = 6230.744348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.062 3.938 3 N -0.455 5.455 4 C 0.132 3.868 5 S 0.171 5.829 6 C -0.231 4.231 7 C 0.061 3.939 8 N -0.406 5.406 9 C -0.004 4.004 10 C 0.134 3.866 11 N -0.662 5.662 12 C 0.183 3.817 13 H 0.037 0.963 14 C -0.184 4.184 15 C -0.499 4.499 16 H 0.082 0.918 17 C 0.068 3.932 18 N -0.899 5.899 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.270 1.270 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.194 0.806 27 H 0.178 0.822 28 H 0.026 0.974 29 H 0.096 0.904 30 H 0.330 0.670 31 H 0.024 0.976 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 10.238 -11.134 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 N -0.179 5.179 4 C -0.234 4.234 5 S 0.419 5.581 6 C -0.368 4.368 7 C -0.069 4.069 8 N -0.086 5.086 9 C -0.117 4.117 10 C 0.003 3.997 11 N -0.292 5.292 12 C 0.075 3.925 13 H 0.054 0.946 14 C -0.242 4.242 15 C -0.537 4.537 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.223 1.223 22 H -0.195 1.195 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.211 0.789 27 H 0.195 0.805 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.745 12.359 -10.953 20.264 hybrid contribution 0.880 -3.645 -0.772 3.828 sum 12.625 8.713 -11.725 19.307 Atomic orbital electron populations 1.20123 0.86117 1.02544 1.03530 1.20567 0.96735 0.86597 1.02947 1.70477 0.96441 1.29818 1.21206 1.26044 1.00373 0.84084 1.12888 1.84571 0.87347 1.03536 1.82655 1.24984 1.03623 0.95462 1.12738 1.20396 0.81116 1.01503 1.03855 1.43760 1.05471 1.07617 1.51783 1.21304 0.78860 0.98128 1.13430 1.20376 1.00099 0.86015 0.93204 1.60690 1.35937 1.23581 1.09031 1.19684 0.91926 0.81951 0.98974 0.94551 1.22880 1.01021 1.01624 0.98711 1.20939 1.34418 0.97350 1.01015 0.89952 1.24935 0.95051 0.98260 0.95075 1.69881 1.38167 1.22606 1.23076 0.86906 0.76569 0.82442 0.82459 1.20850 1.22303 1.19504 0.90033 0.91296 0.90591 0.78904 0.80487 0.95644 0.88605 0.85323 0.95718 0.93397 0.92738 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.20 36.00 0.37 -0.56 16 2 C 0.06 1.04 7.06 -83.08 -0.59 0.45 16 3 N -0.46 -7.97 11.32 -9.77 -0.11 -8.08 16 4 C 0.13 2.04 8.93 -88.71 -0.79 1.25 16 5 S 0.17 1.85 23.37 -107.50 -2.51 -0.67 16 6 C -0.23 -2.02 11.11 29.04 0.32 -1.69 16 7 C 0.06 0.67 11.26 -16.71 -0.19 0.48 16 8 N -0.41 -6.02 3.19 -59.60 -0.19 -6.21 16 9 C 0.00 -0.07 6.76 -80.75 -0.55 -0.62 16 10 C 0.13 2.20 5.81 -4.97 -0.03 2.17 16 11 N -0.66 -13.07 6.22 -109.21 -0.68 -13.75 16 12 C 0.18 4.13 2.17 -68.86 -0.15 3.98 16 13 H 0.04 0.84 6.86 -51.93 -0.36 0.49 16 14 C -0.18 -3.75 8.64 37.16 0.32 -3.43 16 15 C -0.50 -13.75 9.42 -34.44 -0.32 -14.07 16 16 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 18 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 19 Si 0.89 21.35 24.37 -169.99 -4.14 17.21 16 20 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 21 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.08 0.99 7.12 -51.93 -0.37 0.62 16 26 H 0.19 0.94 8.06 -52.49 -0.42 0.51 16 27 H 0.18 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.03 0.39 7.44 -51.93 -0.39 0.01 16 29 H 0.10 1.53 7.03 -51.93 -0.37 1.16 16 30 H 0.33 6.36 8.47 -39.29 -0.33 6.03 16 31 H 0.02 0.42 7.45 -51.93 -0.39 0.04 16 32 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 33 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -32.29 294.27 -8.21 -40.50 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.08 Total: 3.19 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.70 Total: -10.20 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.21 Total: -54.47 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.21 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.51 Total: -0.67 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.29 -8.21 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.729 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds