Wall clock time and date at job start Mon Mar 30 2020 07:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33881 * 125.80971 * 2 1 4 4 C 1.32352 * 109.13795 * 180.23486 * 3 2 1 5 5 S 1.76248 * 141.95378 * 179.79495 * 4 3 2 6 6 C 1.75782 * 90.70239 * 179.97438 * 5 4 3 7 7 C 1.30913 * 109.81370 * 359.97438 * 6 5 4 8 8 N 1.35152 * 108.82420 * 359.77262 * 4 3 2 9 9 C 1.34334 * 125.80549 * 179.83390 * 2 1 3 10 10 C 1.50700 * 126.43801 * 0.04062 * 9 2 1 11 11 N 1.46911 * 109.46831 * 269.68269 * 10 9 2 12 12 C 1.46902 * 110.99614 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 324.99463 * 12 11 10 14 14 C 1.52997 * 109.47094 * 85.00357 * 12 11 10 15 15 C 1.50706 * 109.46577 * 205.00147 * 12 11 10 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 H 1.09006 * 109.47403 * 270.16485 * 1 2 3 24 24 H 1.09008 * 109.47021 * 30.16258 * 1 2 3 25 25 H 1.08997 * 109.47389 * 150.16059 * 1 2 3 26 26 H 1.07997 * 125.09467 * 179.97438 * 6 5 4 27 27 H 1.08008 * 121.83236 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47347 * 149.68721 * 10 9 2 29 29 H 1.09000 * 109.47418 * 29.68028 * 10 9 2 30 30 H 1.00896 * 110.99617 * 303.95659 * 11 10 9 31 31 H 1.09002 * 109.47153 * 299.99508 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99681 * 14 12 11 34 34 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2903 1.0857 0.0000 4 6 3.5581 0.7060 -0.0051 5 16 5.1994 1.3484 -0.0129 6 6 5.8601 -0.2805 -0.0133 7 6 4.8855 -1.1547 -0.0074 8 7 3.6089 -0.6445 -0.0035 9 6 2.2928 -1.0895 0.0032 10 6 1.8332 -2.5247 0.0065 11 7 1.6904 -2.9899 1.3926 12 6 1.2422 -4.3882 1.4350 13 1 0.5590 -4.5760 0.6067 14 6 2.4533 -5.3157 1.3179 15 6 0.5338 -4.6492 2.7394 16 1 0.4276 -3.8558 3.4644 17 6 0.0222 -5.9012 3.0074 18 7 -0.5955 -6.1291 4.1459 19 14 0.2077 -7.2739 1.7543 20 1 1.4727 -8.0089 2.0088 21 1 -0.9401 -8.2089 1.8708 22 1 0.2379 -6.6953 0.3870 23 1 -0.3634 0.0030 1.0277 24 1 -0.3633 0.8886 -0.5164 25 1 -0.3634 -0.8914 -0.5113 26 1 6.9123 -0.5238 -0.0178 27 1 5.0742 -2.2181 -0.0062 28 1 2.5676 -3.1426 -0.5103 29 1 0.8724 -2.5997 -0.5028 30 1 2.5515 -2.8701 1.9047 31 1 2.9656 -5.1269 0.3745 32 1 2.1207 -6.3533 1.3498 33 1 3.1364 -5.1278 2.1463 34 1 -0.9551 -7.0100 4.3346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:34 Heat of formation + Delta-G solvation = 81.602354 kcal Electronic energy + Delta-G solvation = -17657.155061 eV Core-core repulsion = 14910.513931 eV Total energy + Delta-G solvation = -2746.641130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.68574 -38.22267 -37.64934 -34.75398 -32.96579 -32.14574 -30.56695 -27.99662 -27.13391 -25.75984 -24.68819 -22.14463 -21.49892 -20.93692 -19.24509 -18.60723 -17.31403 -16.99816 -16.82370 -16.23476 -15.64942 -15.49445 -14.98582 -14.68762 -14.52521 -14.21614 -13.97963 -13.69404 -13.56736 -13.33926 -12.91768 -12.82579 -12.50688 -12.46054 -12.21666 -12.00705 -11.53234 -11.37953 -11.27726 -11.12609 -10.74807 -9.68408 -9.12807 -8.61344 -8.25468 -6.28825 -0.13189 -0.05567 0.69826 1.22187 1.31027 1.37311 1.47543 1.57242 1.74587 2.33472 3.08666 3.32135 3.55177 3.72058 3.89312 4.06069 4.29373 4.37742 4.46281 4.53153 4.54527 4.65394 4.67718 4.85976 4.91683 4.93428 5.01204 5.21243 5.35580 5.58022 5.65614 5.86726 5.98055 6.58255 6.63814 6.69070 6.78844 7.35976 8.92149 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.004888 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.079442 B = 5726.403766 C = 6230.744348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.043 3.957 3 N -0.496 5.496 4 C 0.108 3.892 5 S 0.202 5.798 6 C -0.197 4.197 7 C 0.024 3.976 8 N -0.407 5.407 9 C -0.022 4.022 10 C 0.144 3.856 11 N -0.676 5.676 12 C 0.189 3.811 13 H 0.037 0.963 14 C -0.177 4.177 15 C -0.504 4.504 16 H 0.031 0.969 17 C 0.008 3.992 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.301 1.301 22 H -0.244 1.244 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.240 0.760 27 H 0.202 0.798 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.331 0.669 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.030 9.616 -13.440 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.088 4.088 3 N -0.221 5.221 4 C -0.257 4.257 5 S 0.450 5.550 6 C -0.333 4.333 7 C -0.104 4.104 8 N -0.087 5.087 9 C -0.136 4.136 10 C 0.014 3.986 11 N -0.306 5.306 12 C 0.080 3.920 13 H 0.055 0.945 14 C -0.236 4.236 15 C -0.542 4.542 16 H 0.049 0.951 17 C -0.189 4.189 18 N -0.594 5.594 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.229 1.229 22 H -0.168 1.168 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.257 0.743 27 H 0.218 0.782 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.609 11.758 -13.282 22.980 hybrid contribution 0.132 -3.251 0.005 3.254 sum 14.741 8.507 -13.277 21.585 Atomic orbital electron populations 1.20129 0.85394 1.03552 1.02959 1.20944 0.97662 0.87012 1.03173 1.70420 0.97760 1.30589 1.23340 1.26856 1.01526 0.85145 1.12218 1.84544 0.84333 1.04732 1.81434 1.25620 1.05240 0.93565 1.08913 1.20933 0.79927 1.03238 1.06259 1.43938 1.06166 1.07479 1.51071 1.21184 0.79852 0.97717 1.14828 1.20278 1.00868 0.86363 0.91098 1.60485 1.36472 1.22071 1.11616 1.19439 0.92676 0.84150 0.95764 0.94466 1.22723 0.99981 1.00000 1.00887 1.21231 1.34708 0.96024 1.02277 0.95082 1.25837 0.94643 1.01237 0.97142 1.70060 1.40108 1.23434 1.25760 0.85784 0.76699 0.78704 0.80684 1.19355 1.22908 1.16813 0.91294 0.90174 0.89704 0.74325 0.78169 0.93644 0.88451 0.85167 0.91800 0.94372 0.92788 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 10.20 71.23 0.73 -1.09 16 2 C 0.04 1.46 7.06 41.35 0.29 1.75 16 3 N -0.50 -17.50 11.32 -184.83 -2.09 -19.59 16 4 C 0.11 3.24 8.93 179.68 1.60 4.84 16 5 S 0.20 3.83 23.37 -56.49 -1.32 2.51 16 6 C -0.20 -2.59 11.11 67.87 0.75 -1.84 16 7 C 0.02 0.44 11.26 83.86 0.94 1.39 16 8 N -0.41 -11.40 3.19 -342.48 -1.09 -12.49 16 9 C -0.02 -0.69 6.76 40.54 0.27 -0.42 16 10 C 0.14 4.49 5.81 85.56 0.50 4.98 16 11 N -0.68 -26.21 6.22 -499.43 -3.11 -29.32 16 12 C 0.19 8.27 2.17 44.17 0.10 8.36 16 13 H 0.04 1.64 6.86 -2.39 -0.02 1.62 16 14 C -0.18 -6.67 8.64 71.98 0.62 -6.05 16 15 C -0.50 -28.38 9.42 25.60 0.24 -28.13 16 16 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 17 C 0.01 0.46 5.45 84.66 0.46 0.92 16 18 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 19 Si 0.95 43.42 24.37 68.60 1.67 45.09 16 20 H -0.27 -11.51 6.87 99.48 0.68 -10.82 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.24 -10.03 6.53 99.48 0.65 -9.39 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.08 2.23 7.12 -2.39 -0.02 2.22 16 26 H 0.24 0.82 8.06 -2.91 -0.02 0.80 16 27 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.05 1.24 7.44 -2.39 -0.02 1.22 16 29 H 0.10 2.97 7.03 -2.39 -0.02 2.96 16 30 H 0.33 12.53 8.47 -89.70 -0.76 11.77 16 31 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 32 H 0.04 1.51 3.27 -2.39 -0.01 1.50 16 33 H 0.05 2.01 8.13 -2.38 -0.02 1.99 16 34 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -73.33 294.27 1.16 -72.17 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.29 Total: 16.16 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 6.51 Total: -15.28 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.99 Total: -120.64 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.67 Total: 45.09 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.32 Total: 2.51 kcal Total: -73.33 1.16 -72.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.772 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds