Wall clock time and date at job start Mon Mar 30 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33882 * 125.80591 * 2 1 4 4 C 1.32354 * 109.13593 * 180.02562 * 3 2 1 5 5 S 1.76250 * 141.94984 * 180.02562 * 4 3 2 6 6 C 1.75782 * 90.69857 * 179.97438 * 5 4 3 7 7 C 1.30916 * 109.81837 * 359.97438 * 6 5 4 8 8 N 1.35145 * 108.82620 * 0.02562 * 4 3 2 9 9 C 1.34327 * 125.80882 * 180.02562 * 2 1 3 10 10 C 1.50707 * 126.43636 * 359.97438 * 9 2 1 11 11 N 1.46899 * 109.46815 * 270.00048 * 10 9 2 12 12 C 1.46904 * 110.99966 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47331 * 34.99691 * 12 11 10 14 14 C 1.53005 * 109.46811 * 274.99851 * 12 11 10 15 15 C 1.50694 * 109.47295 * 154.99863 * 12 11 10 16 16 H 1.07999 * 120.00344 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99967 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99582 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99934 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47276 * 90.00244 * 19 17 15 21 21 H 1.48505 * 109.46627 * 210.00247 * 19 17 15 22 22 H 1.48502 * 109.47234 * 329.99727 * 19 17 15 23 23 H 1.08997 * 109.47309 * 90.02087 * 1 2 3 24 24 H 1.09005 * 109.47274 * 210.02540 * 1 2 3 25 25 H 1.09002 * 109.46941 * 330.02197 * 1 2 3 26 26 H 1.07997 * 125.09219 * 179.97438 * 6 5 4 27 27 H 1.08002 * 121.84036 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47260 * 29.99671 * 10 9 2 29 29 H 1.08997 * 109.47326 * 150.00183 * 10 9 2 30 30 H 1.00901 * 111.00204 * 303.95329 * 11 10 9 31 31 H 1.09007 * 109.47026 * 60.00093 * 14 12 11 32 32 H 1.08999 * 109.46746 * 179.97438 * 14 12 11 33 33 H 1.09000 * 109.47042 * 300.00017 * 14 12 11 34 34 H 0.97005 * 119.99461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0858 0.0000 4 6 3.5582 0.7061 -0.0006 5 16 5.1994 1.3486 -0.0005 6 6 5.8601 -0.2803 -0.0010 7 6 4.8857 -1.1545 -0.0006 8 7 3.6090 -0.6444 -0.0015 9 6 2.2929 -1.0894 -0.0005 10 6 1.8333 -2.5246 -0.0006 11 7 1.6845 -2.9912 1.3844 12 6 1.2373 -4.3899 1.4235 13 1 1.6811 -4.9367 0.5916 14 6 -0.2878 -4.4410 1.3118 15 6 1.6671 -5.0185 2.7239 16 1 2.2170 -4.4371 3.4491 17 6 1.3572 -6.3358 2.9885 18 7 0.6871 -7.0437 2.1057 19 14 1.8894 -7.1148 4.6008 20 1 0.8267 -6.9194 5.6194 21 1 2.1182 -8.5678 4.3966 22 1 3.1463 -6.4766 5.0679 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 6.9123 -0.5235 -0.0015 27 1 5.0742 -2.2179 -0.0004 28 1 0.8747 -2.5992 -0.5140 29 1 2.5699 -3.1420 -0.5148 30 1 2.5434 -2.8719 1.9004 31 1 -0.5986 -3.9863 0.3712 32 1 -0.6196 -5.4789 1.3405 33 1 -0.7315 -3.8942 2.1438 34 1 0.4688 -7.9703 2.2920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134971477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:36 Heat of formation + Delta-G solvation = 93.116755 kcal Electronic energy + Delta-G solvation = -17598.260073 eV Core-core repulsion = 14852.118245 eV Total energy + Delta-G solvation = -2746.141828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54148 -36.77745 -36.02080 -32.97471 -31.19246 -30.87964 -28.59996 -26.63359 -25.38182 -24.33478 -23.48244 -20.39113 -19.96536 -19.72588 -18.04157 -16.54966 -16.05336 -15.79301 -15.05584 -14.78130 -14.33630 -13.83612 -13.63260 -13.33401 -13.04015 -12.58751 -12.37128 -12.13895 -11.81684 -11.43645 -11.39599 -11.23523 -10.95982 -10.83588 -10.47692 -10.37661 -10.20569 -10.09229 -9.87851 -8.93202 -8.58000 -8.53868 -7.58909 -7.39080 -6.10340 -4.17317 0.89655 0.94626 1.59153 2.28614 2.62857 2.99091 3.24931 3.31652 3.34241 4.33730 4.47028 4.73254 5.03218 5.09294 5.20682 5.30547 5.33296 5.47954 5.75769 5.91628 6.01211 6.03413 6.19784 6.39893 6.75850 6.77836 6.97168 7.04690 7.12724 7.38990 7.69339 7.78660 7.87251 8.17373 8.25531 8.52361 8.91575 9.49049 10.95755 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.004933 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.463714 B = 5674.519130 C = 6450.984904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.056 3.944 3 N -0.456 5.456 4 C 0.130 3.870 5 S 0.166 5.834 6 C -0.231 4.231 7 C 0.063 3.937 8 N -0.406 5.406 9 C 0.002 3.998 10 C 0.135 3.865 11 N -0.679 5.679 12 C 0.212 3.788 13 H 0.001 0.999 14 C -0.125 4.125 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.194 0.806 27 H 0.180 0.820 28 H 0.093 0.907 29 H 0.026 0.974 30 H 0.329 0.671 31 H 0.005 0.995 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 11.778 -6.153 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 N -0.180 5.180 4 C -0.236 4.236 5 S 0.414 5.586 6 C -0.369 4.369 7 C -0.066 4.066 8 N -0.086 5.086 9 C -0.111 4.111 10 C 0.005 3.995 11 N -0.311 5.311 12 C 0.105 3.895 13 H 0.019 0.981 14 C -0.183 4.183 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.211 0.789 27 H 0.197 0.803 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.146 0.854 31 H 0.024 0.976 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.450 13.826 -6.117 16.855 hybrid contribution 0.964 -3.167 0.637 3.371 sum 8.413 10.660 -5.480 14.644 Atomic orbital electron populations 1.20151 0.86330 1.03865 1.02299 1.20524 0.96645 0.86631 1.03636 1.70459 0.96467 1.29884 1.21237 1.26021 1.00313 0.84139 1.13100 1.84520 0.87434 1.03725 1.82902 1.24972 1.03617 0.95325 1.12949 1.20450 0.81065 1.01652 1.03420 1.43764 1.05547 1.07580 1.51691 1.21446 0.78805 0.98327 1.12569 1.20350 0.99911 0.85666 0.93596 1.60832 1.36029 1.25388 1.08845 1.19152 0.93013 0.81029 0.96311 0.98109 1.21726 0.97645 1.02432 0.96536 1.21218 1.35998 0.96014 1.02645 0.92298 1.24906 0.94952 0.97075 0.96932 1.69892 1.39239 1.08974 1.34605 0.86512 0.79022 0.78283 0.83667 1.20502 1.21224 1.20007 0.91320 0.89495 0.91022 0.78909 0.80291 0.88866 0.95582 0.85380 0.97554 0.90001 0.94746 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.02 36.01 0.36 -0.62 16 2 C 0.06 0.97 7.06 -83.08 -0.59 0.38 16 3 N -0.46 -8.20 11.33 -9.77 -0.11 -8.31 16 4 C 0.13 2.10 8.92 -88.71 -0.79 1.31 16 5 S 0.17 1.90 23.37 -107.50 -2.51 -0.61 16 6 C -0.23 -2.23 11.11 29.04 0.32 -1.91 16 7 C 0.06 0.77 11.26 -16.71 -0.19 0.58 16 8 N -0.41 -6.40 3.19 -59.60 -0.19 -6.59 16 9 C 0.00 0.03 6.76 -80.75 -0.55 -0.52 16 10 C 0.14 2.42 5.62 -4.97 -0.03 2.39 16 11 N -0.68 -14.19 6.29 -109.22 -0.69 -14.88 16 12 C 0.21 5.18 2.60 -68.86 -0.18 5.00 16 13 H 0.00 0.03 7.80 -51.93 -0.40 -0.37 16 14 C -0.13 -2.99 9.19 37.16 0.34 -2.65 16 15 C -0.52 -13.93 8.59 -34.44 -0.30 -14.22 16 16 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.09 1.30 7.75 -51.93 -0.40 0.90 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.62 7.05 -51.93 -0.37 1.26 16 29 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 30 H 0.33 6.95 8.21 -39.29 -0.32 6.63 16 31 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 32 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -30.39 301.66 -9.30 -39.69 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.27 Total: 3.06 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.68 Total: -8.64 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.36 Total: -53.91 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.51 Total: -0.61 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.39 -9.30 -39.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.803 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds