Wall clock time and date at job start Mon Mar 30 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33882 * 125.80591 * 2 1 4 4 C 1.32354 * 109.13593 * 180.02562 * 3 2 1 5 5 S 1.76250 * 141.94984 * 180.02562 * 4 3 2 6 6 C 1.75782 * 90.69857 * 179.97438 * 5 4 3 7 7 C 1.30916 * 109.81837 * 359.97438 * 6 5 4 8 8 N 1.35145 * 108.82620 * 0.02562 * 4 3 2 9 9 C 1.34327 * 125.80882 * 180.02562 * 2 1 3 10 10 C 1.50707 * 126.43636 * 359.97438 * 9 2 1 11 11 N 1.46899 * 109.46815 * 270.00048 * 10 9 2 12 12 C 1.46904 * 110.99966 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47331 * 34.99691 * 12 11 10 14 14 C 1.53005 * 109.46811 * 274.99851 * 12 11 10 15 15 C 1.50694 * 109.47295 * 154.99863 * 12 11 10 16 16 H 1.07999 * 120.00344 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99967 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99582 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99934 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47276 * 90.00244 * 19 17 15 21 21 H 1.48505 * 109.46627 * 210.00247 * 19 17 15 22 22 H 1.48502 * 109.47234 * 329.99727 * 19 17 15 23 23 H 1.08997 * 109.47309 * 90.02087 * 1 2 3 24 24 H 1.09005 * 109.47274 * 210.02540 * 1 2 3 25 25 H 1.09002 * 109.46941 * 330.02197 * 1 2 3 26 26 H 1.07997 * 125.09219 * 179.97438 * 6 5 4 27 27 H 1.08002 * 121.84036 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47260 * 29.99671 * 10 9 2 29 29 H 1.08997 * 109.47326 * 150.00183 * 10 9 2 30 30 H 1.00901 * 111.00204 * 303.95329 * 11 10 9 31 31 H 1.09007 * 109.47026 * 60.00093 * 14 12 11 32 32 H 1.08999 * 109.46746 * 179.97438 * 14 12 11 33 33 H 1.09000 * 109.47042 * 300.00017 * 14 12 11 34 34 H 0.97005 * 119.99461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0858 0.0000 4 6 3.5582 0.7061 -0.0006 5 16 5.1994 1.3486 -0.0005 6 6 5.8601 -0.2803 -0.0010 7 6 4.8857 -1.1545 -0.0006 8 7 3.6090 -0.6444 -0.0015 9 6 2.2929 -1.0894 -0.0005 10 6 1.8333 -2.5246 -0.0006 11 7 1.6845 -2.9912 1.3844 12 6 1.2373 -4.3899 1.4235 13 1 1.6811 -4.9367 0.5916 14 6 -0.2878 -4.4410 1.3118 15 6 1.6671 -5.0185 2.7239 16 1 2.2170 -4.4371 3.4491 17 6 1.3572 -6.3358 2.9885 18 7 0.6871 -7.0437 2.1057 19 14 1.8894 -7.1148 4.6008 20 1 0.8267 -6.9194 5.6194 21 1 2.1182 -8.5678 4.3966 22 1 3.1463 -6.4766 5.0679 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 6.9123 -0.5235 -0.0015 27 1 5.0742 -2.2179 -0.0004 28 1 0.8747 -2.5992 -0.5140 29 1 2.5699 -3.1420 -0.5148 30 1 2.5434 -2.8719 1.9004 31 1 -0.5986 -3.9863 0.3712 32 1 -0.6196 -5.4789 1.3405 33 1 -0.7315 -3.8942 2.1438 34 1 0.4688 -7.9703 2.2920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:36 Heat of formation + Delta-G solvation = 74.392183 kcal Electronic energy + Delta-G solvation = -17599.072031 eV Core-core repulsion = 14852.118245 eV Total energy + Delta-G solvation = -2746.953786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.69050 -38.03983 -37.57109 -34.81708 -32.55790 -32.12173 -30.18698 -27.96382 -27.31897 -25.70733 -24.68061 -21.82069 -21.50785 -20.92698 -19.22927 -18.39114 -17.26953 -16.97824 -16.83825 -16.04523 -15.59813 -15.40280 -15.07180 -14.77162 -14.16348 -14.12263 -13.76426 -13.52418 -13.20389 -13.04263 -12.78875 -12.71447 -12.48046 -12.31623 -12.27307 -12.19657 -12.00538 -11.39644 -11.20458 -10.90964 -10.59023 -9.68558 -9.17038 -8.61598 -8.14954 -6.29321 -0.13340 -0.06653 0.67527 1.21043 1.41012 1.42967 1.51845 1.56939 1.74377 2.40199 3.13686 3.33394 3.65218 3.73742 3.89473 4.08470 4.28976 4.44495 4.55337 4.64731 4.82738 4.83944 4.91420 5.00672 5.09487 5.19047 5.22527 5.45314 5.59047 5.63387 5.83123 5.86802 6.21007 6.38000 6.64477 6.69057 6.91287 7.40987 8.90054 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.004933 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.463714 B = 5674.519130 C = 6450.984904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.046 3.954 3 N -0.492 5.492 4 C 0.108 3.892 5 S 0.209 5.791 6 C -0.195 4.195 7 C 0.021 3.979 8 N -0.408 5.408 9 C -0.023 4.023 10 C 0.147 3.853 11 N -0.676 5.676 12 C 0.218 3.782 13 H -0.025 1.025 14 C -0.114 4.114 15 C -0.538 4.538 16 H 0.055 0.945 17 C 0.018 3.982 18 N -0.914 5.914 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.240 0.760 27 H 0.193 0.807 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.327 0.673 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.726 12.444 -5.925 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 N -0.218 5.218 4 C -0.257 4.257 5 S 0.456 5.544 6 C -0.332 4.332 7 C -0.106 4.106 8 N -0.088 5.088 9 C -0.137 4.137 10 C 0.017 3.983 11 N -0.307 5.307 12 C 0.110 3.890 13 H -0.007 1.007 14 C -0.173 4.173 15 C -0.577 4.577 16 H 0.073 0.927 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.786 3.214 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.256 0.744 27 H 0.210 0.790 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.144 0.856 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.318 14.503 -5.896 18.219 hybrid contribution 0.536 -3.265 0.517 3.349 sum 9.854 11.238 -5.379 15.885 Atomic orbital electron populations 1.20175 0.85084 1.03623 1.03402 1.20954 0.97760 0.86702 1.03054 1.70431 0.97582 1.30407 1.23359 1.26886 1.01653 0.84948 1.12255 1.84455 0.84161 1.04286 1.81457 1.25607 1.05127 0.93747 1.08694 1.20881 0.80225 1.03054 1.06467 1.43927 1.06143 1.07646 1.51079 1.21207 0.79942 0.97583 1.14962 1.20187 1.00120 0.86344 0.91642 1.60735 1.36007 1.23020 1.10946 1.18943 0.93068 0.82480 0.94493 1.00709 1.21553 0.97327 1.00924 0.97462 1.21514 1.36174 0.96535 1.03457 0.92726 1.25662 0.94949 0.97571 1.00012 1.70009 1.39921 1.09210 1.36177 0.85529 0.78708 0.77437 0.79765 1.20279 1.20739 1.19399 0.89528 0.90372 0.90467 0.74352 0.78985 0.88656 0.95585 0.85640 0.95314 0.92371 0.95328 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.02 71.24 0.71 -1.15 16 2 C 0.05 1.60 7.06 41.35 0.29 1.89 16 3 N -0.49 -17.66 11.33 -184.83 -2.09 -19.75 16 4 C 0.11 3.38 8.92 179.68 1.60 4.99 16 5 S 0.21 4.22 23.37 -56.49 -1.32 2.90 16 6 C -0.20 -3.05 11.11 67.87 0.75 -2.30 16 7 C 0.02 0.47 11.26 83.85 0.94 1.42 16 8 N -0.41 -12.58 3.19 -342.48 -1.09 -13.67 16 9 C -0.02 -0.79 6.76 40.54 0.27 -0.51 16 10 C 0.15 5.30 5.62 85.56 0.48 5.78 16 11 N -0.68 -28.51 6.29 -499.45 -3.14 -31.66 16 12 C 0.22 10.81 2.60 44.17 0.11 10.92 16 13 H -0.02 -1.33 7.80 -2.39 -0.02 -1.35 16 14 C -0.11 -5.53 9.19 71.98 0.66 -4.87 16 15 C -0.54 -29.04 8.59 25.60 0.22 -28.82 16 16 H 0.05 2.93 7.62 -2.91 -0.02 2.90 16 17 C 0.02 0.96 5.30 84.66 0.45 1.41 16 18 N -0.91 -51.36 11.32 21.45 0.24 -51.12 16 19 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.08 2.34 7.75 -2.38 -0.02 2.32 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.24 1.41 8.06 -2.91 -0.02 1.39 16 27 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.10 3.34 7.05 -2.39 -0.02 3.32 16 29 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 30 H 0.33 13.94 8.21 -89.69 -0.74 13.20 16 31 H 0.03 1.21 7.45 -2.38 -0.02 1.19 16 32 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -65.87 301.66 1.51 -64.36 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.38 Total: 15.47 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.51 Total: -11.23 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -6.08 Total: -116.20 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.32 Total: 2.90 kcal Total: -65.87 1.51 -64.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.749 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds