Wall clock time and date at job start Mon Mar 30 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48503 * 109.46634 * 269.99384 * 3 2 1 5 5 H 1.48496 * 109.47006 * 29.99588 * 3 2 1 6 6 H 1.48497 * 109.47263 * 149.99912 * 3 2 1 7 7 C 1.39868 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99567 * 197.97312 * 7 2 1 9 9 C 1.41129 * 119.99905 * 17.97995 * 7 2 1 10 10 C 1.40906 * 120.15085 * 204.61805 * 9 7 2 11 11 C 1.36345 * 119.85969 * 179.97438 * 10 9 7 12 12 C 1.39549 * 120.16771 * 359.97438 * 11 10 9 13 13 N 1.38893 * 119.84443 * 179.97438 * 12 11 10 14 14 C 1.46849 * 111.00029 * 64.21535 * 13 12 11 15 15 C 1.53036 * 109.52576 * 174.15595 * 14 13 12 16 16 C 1.53114 * 109.27684 * 59.18289 * 15 14 13 17 17 C 1.53124 * 109.16018 * 302.34341 * 16 15 14 18 18 C 1.46840 * 111.00464 * 300.00651 * 13 12 11 19 19 C 1.39666 * 120.30600 * 0.28116 * 12 11 10 20 20 Cl 1.73595 * 119.92824 * 179.69958 * 19 12 11 21 21 C 1.36436 * 120.14065 * 359.43768 * 19 12 11 22 22 H 0.96999 * 119.99478 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.06828 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.91433 * 179.97438 * 11 10 9 25 25 H 1.09004 * 109.46075 * 294.17923 * 14 13 12 26 26 H 1.09009 * 109.45928 * 54.14258 * 14 13 12 27 27 H 1.08994 * 109.50432 * 299.24034 * 15 14 13 28 28 H 1.09002 * 109.53601 * 179.13704 * 15 14 13 29 29 H 1.09001 * 109.52647 * 182.44048 * 16 15 14 30 30 H 1.09004 * 109.57948 * 62.27686 * 16 15 14 31 31 H 1.08996 * 109.50437 * 297.71419 * 17 16 15 32 32 H 1.09004 * 109.53458 * 177.61542 * 17 16 15 33 33 H 1.09002 * 109.46100 * 305.85669 * 18 13 12 34 34 H 1.08995 * 109.46819 * 65.83292 * 18 13 12 35 35 H 1.08001 * 120.08226 * 180.25333 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4908 2.0462 -1.4001 5 1 1.4406 2.6526 0.6999 6 1 3.5407 1.4401 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0488 -1.2340 0.2892 9 6 1.3543 -2.4038 -0.3762 10 6 1.8264 -3.6473 0.0889 11 6 1.1897 -4.7956 -0.2784 12 6 0.0723 -4.7419 -1.1126 13 7 -0.5709 -5.9159 -1.4830 14 6 -1.1562 -6.5863 -0.3149 15 6 -1.9772 -7.7928 -0.7758 16 6 -1.0691 -8.7597 -1.5406 17 6 -0.4345 -8.0236 -2.7238 18 6 0.3417 -6.8103 -2.2064 19 6 -0.3984 -3.5136 -1.5820 20 17 -1.7846 -3.4587 -2.6255 21 6 0.2257 -2.3563 -1.2177 22 1 -0.4849 0.8401 -0.0004 23 1 2.6903 -3.6906 0.7355 24 1 1.5511 -5.7492 0.0772 25 1 -0.3591 -6.9214 0.3488 26 1 -1.8030 -5.8890 0.2177 27 1 -2.7829 -7.4569 -1.4284 28 1 -2.3992 -8.2996 0.0922 29 1 -1.6587 -9.5997 -1.9081 30 1 -0.2858 -9.1270 -0.8776 31 1 -1.2159 -7.6913 -3.4072 32 1 0.2461 -8.6946 -3.2479 33 1 0.7830 -6.2758 -3.0477 34 1 1.1317 -7.1446 -1.5340 35 1 -0.1416 -1.4066 -1.5779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147079499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:04 Heat of formation + Delta-G solvation = 0.105535 kcal Electronic energy + Delta-G solvation = -17880.148923 eV Core-core repulsion = 15095.637369 eV Total energy + Delta-G solvation = -2784.511555 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20835 -37.08937 -35.18129 -34.07860 -32.44740 -30.46195 -29.42080 -28.79279 -25.39497 -23.19078 -22.63674 -21.34865 -20.32520 -19.14871 -17.51775 -16.34146 -15.39398 -14.50056 -14.48391 -14.21693 -14.18070 -13.53079 -13.13341 -12.96925 -12.72108 -12.50819 -12.06199 -11.86071 -11.62015 -11.25839 -11.17515 -10.91622 -10.87773 -10.54666 -10.32016 -10.20742 -10.05962 -10.04109 -9.86219 -9.46876 -9.22344 -7.65551 -7.53950 -7.37440 -6.90285 -4.50038 2.53234 2.83870 3.00824 3.04254 3.06965 3.50318 3.82949 4.40771 4.59258 5.10403 5.15481 5.18052 5.44468 5.60081 5.76484 5.85746 5.87037 6.03037 6.05202 6.14312 6.15094 6.31290 6.39782 6.43777 6.51496 6.64004 6.88406 6.98642 7.09173 7.24060 7.31085 7.71584 7.74106 7.79870 8.04840 8.31040 8.44114 8.70284 8.78435 10.02309 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.034230 B = 0.005464 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.789158 B = 5123.294316 C = 5539.304952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.120 3.880 10 C -0.219 4.219 11 C -0.098 4.098 12 C -0.056 4.056 13 N -0.473 5.473 14 C 0.064 3.936 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.064 3.936 19 C 0.033 3.967 20 Cl -0.110 7.110 21 C -0.164 4.164 22 H 0.285 0.715 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -8.526 -2.132 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.240 4.240 11 C -0.119 4.119 12 C -0.151 4.151 13 N -0.194 5.194 14 C -0.063 4.063 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.063 4.063 19 C 0.006 3.994 20 Cl -0.081 7.081 21 C -0.185 4.185 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.988 -8.246 -2.522 8.850 hybrid contribution 0.904 0.554 0.604 1.220 sum -1.084 -7.693 -1.919 8.002 Atomic orbital electron populations 1.69850 1.07634 1.29779 1.33196 1.25985 0.94787 1.01621 0.92120 0.86251 0.80456 0.80224 0.79534 1.19048 1.20139 1.18493 1.19583 0.98353 0.91128 1.39003 0.89930 1.17528 0.90354 0.92289 0.88142 1.20682 1.03978 0.92664 1.06641 1.20651 0.96004 0.97054 0.98169 1.17636 0.99806 0.88796 1.08904 1.58952 1.33619 1.03408 1.23431 1.22062 0.97322 0.95114 0.91791 1.21592 0.98481 0.95642 0.99654 1.21550 0.98854 0.97681 0.97494 1.21596 0.99806 0.96297 0.97676 1.22054 0.93365 0.93028 0.97832 1.20370 0.89604 0.93819 0.95622 1.98246 1.44089 1.98872 1.66941 1.20959 0.99708 0.96033 1.01793 0.90418 0.88608 0.89075 0.95596 0.91152 0.91301 0.92296 0.92499 0.92690 0.91309 0.92309 0.91214 0.95572 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.53 10.96 55.54 0.61 -18.92 16 2 C 0.07 1.79 5.13 -17.34 -0.09 1.71 16 3 Si 0.91 17.93 29.60 -169.99 -5.03 12.90 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.45 9.03 -37.88 -0.34 -11.79 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.08 5.57 -106.80 -0.60 2.48 16 10 C -0.22 -5.17 9.74 -39.25 -0.38 -5.55 16 11 C -0.10 -2.15 8.60 -39.77 -0.34 -2.49 16 12 C -0.06 -1.22 4.68 -83.64 -0.39 -1.61 16 13 N -0.47 -8.89 3.98 -170.95 -0.68 -9.57 16 14 C 0.06 1.08 5.16 -3.83 -0.02 1.06 16 15 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.12 -1.46 6.00 -26.61 -0.16 -1.62 16 17 C -0.12 -1.55 6.09 -26.65 -0.16 -1.71 16 18 C 0.06 1.06 5.10 -3.84 -0.02 1.04 16 19 C 0.03 0.78 6.30 -39.70 -0.25 0.53 16 20 Cl -0.11 -2.34 28.41 -51.86 -1.47 -3.81 16 21 C -0.16 -4.19 8.40 -39.24 -0.33 -4.52 16 22 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 23 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 24 H 0.09 1.80 7.08 -52.49 -0.37 1.43 16 25 H 0.03 0.44 7.52 -51.93 -0.39 0.05 16 26 H 0.07 1.28 8.10 -51.92 -0.42 0.86 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.03 0.43 7.30 -51.93 -0.38 0.05 16 35 H 0.13 3.45 6.16 -52.49 -0.32 3.13 16 LS Contribution 297.55 15.07 4.48 4.48 Total: -1.00 -25.58 297.55 -10.15 -35.74 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.81 Total: 3.40 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -3.25 Total: -24.21 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: -0.07 Total: -28.49 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -1.47 Total: -3.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.58 -10.15 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147079499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.841 kcal (2) G-P(sol) polarization free energy of solvation -25.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds