Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48503 * 109.46634 * 269.99384 * 3 2 1 5 5 H 1.48496 * 109.47006 * 29.99588 * 3 2 1 6 6 H 1.48497 * 109.47263 * 149.99912 * 3 2 1 7 7 C 1.39868 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99567 * 197.97312 * 7 2 1 9 9 C 1.41129 * 119.99905 * 17.97995 * 7 2 1 10 10 C 1.40906 * 120.15085 * 204.61805 * 9 7 2 11 11 C 1.36345 * 119.85969 * 179.97438 * 10 9 7 12 12 C 1.39549 * 120.16771 * 359.97438 * 11 10 9 13 13 N 1.38893 * 119.84443 * 179.97438 * 12 11 10 14 14 C 1.46849 * 111.00029 * 64.21535 * 13 12 11 15 15 C 1.53036 * 109.52576 * 174.15595 * 14 13 12 16 16 C 1.53114 * 109.27684 * 59.18289 * 15 14 13 17 17 C 1.53124 * 109.16018 * 302.34341 * 16 15 14 18 18 C 1.46840 * 111.00464 * 300.00651 * 13 12 11 19 19 C 1.39666 * 120.30600 * 0.28116 * 12 11 10 20 20 Cl 1.73595 * 119.92824 * 179.69958 * 19 12 11 21 21 C 1.36436 * 120.14065 * 359.43768 * 19 12 11 22 22 H 0.96999 * 119.99478 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.06828 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.91433 * 179.97438 * 11 10 9 25 25 H 1.09004 * 109.46075 * 294.17923 * 14 13 12 26 26 H 1.09009 * 109.45928 * 54.14258 * 14 13 12 27 27 H 1.08994 * 109.50432 * 299.24034 * 15 14 13 28 28 H 1.09002 * 109.53601 * 179.13704 * 15 14 13 29 29 H 1.09001 * 109.52647 * 182.44048 * 16 15 14 30 30 H 1.09004 * 109.57948 * 62.27686 * 16 15 14 31 31 H 1.08996 * 109.50437 * 297.71419 * 17 16 15 32 32 H 1.09004 * 109.53458 * 177.61542 * 17 16 15 33 33 H 1.09002 * 109.46100 * 305.85669 * 18 13 12 34 34 H 1.08995 * 109.46819 * 65.83292 * 18 13 12 35 35 H 1.08001 * 120.08226 * 180.25333 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4908 2.0462 -1.4001 5 1 1.4406 2.6526 0.6999 6 1 3.5407 1.4401 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0488 -1.2340 0.2892 9 6 1.3543 -2.4038 -0.3762 10 6 1.8264 -3.6473 0.0889 11 6 1.1897 -4.7956 -0.2784 12 6 0.0723 -4.7419 -1.1126 13 7 -0.5709 -5.9159 -1.4830 14 6 -1.1562 -6.5863 -0.3149 15 6 -1.9772 -7.7928 -0.7758 16 6 -1.0691 -8.7597 -1.5406 17 6 -0.4345 -8.0236 -2.7238 18 6 0.3417 -6.8103 -2.2064 19 6 -0.3984 -3.5136 -1.5820 20 17 -1.7846 -3.4587 -2.6255 21 6 0.2257 -2.3563 -1.2177 22 1 -0.4849 0.8401 -0.0004 23 1 2.6903 -3.6906 0.7355 24 1 1.5511 -5.7492 0.0772 25 1 -0.3591 -6.9214 0.3488 26 1 -1.8030 -5.8890 0.2177 27 1 -2.7829 -7.4569 -1.4284 28 1 -2.3992 -8.2996 0.0922 29 1 -1.6587 -9.5997 -1.9081 30 1 -0.2858 -9.1270 -0.8776 31 1 -1.2159 -7.6913 -3.4072 32 1 0.2461 -8.6946 -3.2479 33 1 0.7830 -6.2758 -3.0477 34 1 1.1317 -7.1446 -1.5340 35 1 -0.1416 -1.4066 -1.5779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147079499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = -11.287330 kcal Electronic energy + Delta-G solvation = -17880.642955 eV Core-core repulsion = 15095.637369 eV Total energy + Delta-G solvation = -2785.005586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74216 -38.69002 -36.97260 -35.72921 -33.96747 -31.67195 -31.26385 -30.53152 -27.05225 -24.69210 -23.85062 -23.08771 -22.03625 -20.41495 -19.35064 -17.90495 -17.11915 -16.15525 -15.90003 -15.84591 -15.44917 -14.92475 -14.51182 -14.40336 -14.37783 -14.04208 -13.68039 -13.39266 -13.05974 -12.91903 -12.85508 -12.56045 -12.09617 -12.03155 -11.85635 -11.72789 -11.54307 -11.43142 -11.29839 -11.09062 -10.98622 -9.39317 -9.21673 -9.14000 -8.70091 -6.39973 0.74655 0.96478 1.38937 1.48557 1.52549 1.67951 2.18416 2.60432 3.16537 3.56671 3.98229 4.05886 4.10859 4.27691 4.40528 4.52194 4.63557 4.67129 4.76480 4.93307 5.00477 5.04320 5.07248 5.08877 5.17819 5.23647 5.27259 5.32144 5.44419 5.48201 5.57141 5.90067 5.93706 6.17155 6.34174 6.46500 6.68041 6.83227 6.97897 8.25216 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.034230 B = 0.005464 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.789158 B = 5123.294316 C = 5539.304952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.091 3.909 10 C -0.229 4.229 11 C -0.097 4.097 12 C -0.043 4.043 13 N -0.484 5.484 14 C 0.063 3.937 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.063 3.937 19 C 0.018 3.982 20 Cl -0.094 7.094 21 C -0.184 4.184 22 H 0.291 0.709 23 H 0.106 0.894 24 H 0.116 0.884 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.029 0.971 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -10.151 -2.241 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.088 3.912 10 C -0.249 4.249 11 C -0.118 4.118 12 C -0.139 4.139 13 N -0.205 5.205 14 C -0.064 4.064 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.064 4.064 19 C -0.010 4.010 20 Cl -0.065 7.065 21 C -0.205 4.205 22 H 0.102 0.898 23 H 0.124 0.876 24 H 0.134 0.866 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.879 -9.898 -2.633 10.414 hybrid contribution 0.796 0.919 0.606 1.358 sum -1.083 -8.979 -2.027 9.269 Atomic orbital electron populations 1.69906 1.09124 1.30995 1.34009 1.26820 0.95445 1.04736 0.91052 0.85168 0.79157 0.75674 0.79580 1.18730 1.19253 1.17851 1.19835 0.98690 0.92159 1.40720 0.89767 1.17859 0.91012 0.93448 0.88872 1.20888 1.04496 0.92675 1.06847 1.20889 0.95654 0.97542 0.97668 1.17867 0.99148 0.89695 1.07221 1.59007 1.33914 1.03191 1.24368 1.22105 0.97354 0.95871 0.91061 1.21567 0.98012 0.94543 1.00625 1.21547 0.98973 0.97764 0.96852 1.21574 0.99776 0.95238 0.98167 1.22121 0.93563 0.93663 0.97078 1.20575 0.90199 0.94111 0.96105 1.98235 1.43094 1.98876 1.66335 1.20859 1.00685 0.95965 1.02978 0.89804 0.87615 0.86642 0.95412 0.93193 0.91927 0.90120 0.90001 0.91993 0.91911 0.89935 0.92687 0.95291 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.03 10.96 21.82 0.24 -41.79 16 2 C 0.04 1.76 5.13 85.23 0.44 2.20 16 3 Si 0.98 37.07 29.60 68.60 2.03 39.10 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.49 -25.31 9.03 23.37 0.21 -25.10 16 8 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 9 C 0.09 4.81 5.57 -21.27 -0.12 4.69 16 10 C -0.23 -10.91 9.74 22.48 0.22 -10.69 16 11 C -0.10 -4.20 8.60 22.14 0.19 -4.01 16 12 C -0.04 -1.89 4.68 38.68 0.18 -1.71 16 13 N -0.48 -17.61 3.98 -694.77 -2.77 -20.38 16 14 C 0.06 2.02 5.16 86.32 0.45 2.47 16 15 C -0.11 -2.67 6.09 30.64 0.19 -2.48 16 16 C -0.11 -2.36 6.00 30.67 0.18 -2.18 16 17 C -0.11 -2.60 6.09 30.65 0.19 -2.41 16 18 C 0.06 1.95 5.10 86.33 0.44 2.39 16 19 C 0.02 0.85 6.30 22.19 0.14 0.98 16 20 Cl -0.09 -4.02 28.41 -2.72 -0.08 -4.10 16 21 C -0.18 -9.72 8.40 22.49 0.19 -9.53 16 22 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 23 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 24 H 0.12 4.36 7.08 -2.91 -0.02 4.34 16 25 H 0.03 0.88 7.52 -2.38 -0.02 0.86 16 26 H 0.05 1.79 8.10 -2.38 -0.02 1.77 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.03 0.89 7.30 -2.39 -0.02 0.87 16 35 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16 Total: -1.00 -56.00 297.55 3.39 -52.61 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.08 Total: 19.93 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 2.89 Total: -45.38 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -2.53 Total: -62.16 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 17 Polarization: -4.02 SS G_CDS: -0.08 Total: -4.10 kcal Total: -56.00 3.39 -52.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147079499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.324 kcal (2) G-P(sol) polarization free energy of solvation -56.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds