Wall clock time and date at job start Mon Mar 30 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35995 * 117.00010 * 2 1 4 4 C 1.38705 * 120.10333 * 359.72873 * 3 2 1 5 5 C 1.38024 * 120.09901 * 179.90832 * 4 3 2 6 6 C 1.39275 * 120.53433 * 0.57791 * 5 4 3 7 7 C 1.39072 * 119.31554 * 359.33474 * 6 5 4 8 8 C 1.38499 * 120.10116 * 180.02562 * 3 2 1 9 9 S 1.76401 * 121.19481 * 180.86129 * 7 6 5 10 10 C 1.81682 * 102.59010 * 343.51404 * 9 7 6 11 11 C 1.53585 * 107.82373 * 47.14152 * 10 9 7 12 12 H 1.08996 * 109.61036 * 53.94609 * 11 10 9 13 13 C 1.53005 * 109.60667 * 174.45283 * 11 10 9 14 14 C 1.50702 * 109.46951 * 184.14204 * 13 11 10 15 15 H 1.08005 * 119.99695 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99951 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00022 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47023 * 90.00793 * 18 16 14 20 20 H 1.48503 * 109.47121 * 210.00358 * 18 16 14 21 21 H 1.48495 * 109.47295 * 330.00190 * 18 16 14 22 22 N 1.39876 * 117.87714 * 178.79918 * 6 5 4 23 23 H 1.08999 * 109.46969 * 59.99708 * 1 2 3 24 24 H 1.08995 * 109.47607 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46864 * 300.00327 * 1 2 3 26 26 H 1.07995 * 119.95178 * 0.16128 * 4 3 2 27 27 H 1.07995 * 119.73219 * 180.28105 * 5 4 3 28 28 H 1.08007 * 119.86849 * 359.97438 * 8 3 2 29 29 H 1.08995 * 109.78993 * 287.56259 * 10 9 7 30 30 H 1.08995 * 109.84040 * 166.75051 * 10 9 7 31 31 H 1.08993 * 109.47262 * 304.14293 * 13 11 10 32 32 H 1.08998 * 109.46800 * 64.14690 * 13 11 10 33 33 H 0.96999 * 120.00606 * 179.97438 * 17 16 14 34 34 H 0.97001 * 118.62135 * 341.78862 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2931 2.3764 -0.0057 5 6 1.9198 3.6061 -0.0038 6 6 3.3099 3.6919 -0.0082 7 6 4.0643 2.5235 -0.0006 8 6 3.4294 1.2866 -0.0005 9 16 5.8275 2.5745 0.0169 10 6 6.1792 4.2854 -0.4831 11 6 5.2757 5.2120 0.3439 12 1 5.4102 5.0024 1.4050 13 6 5.6352 6.6710 0.0555 14 6 4.8180 7.5745 0.9425 15 1 4.1130 7.1504 1.6423 16 6 4.9703 8.9423 0.8608 17 7 4.2574 9.7308 1.6352 18 14 6.1901 9.6756 -0.3491 19 1 5.5122 9.9231 -1.6469 20 1 6.7115 10.9576 0.1894 21 1 7.3164 8.7292 -0.5514 22 7 3.8865 4.9661 -0.0319 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2146 2.3209 -0.0075 27 1 1.3275 4.5091 -0.0036 28 1 4.0172 0.3805 -0.0005 29 1 5.9644 4.4113 -1.5442 30 1 7.2256 4.5201 -0.2881 31 1 6.6953 6.8298 0.2531 32 1 5.4223 6.8979 -0.9891 33 1 4.3648 10.6932 1.5780 34 1 3.3406 5.7180 -0.3102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214254590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:47 Heat of formation + Delta-G solvation = -12.917121 kcal Electronic energy + Delta-G solvation = -17421.146358 eV Core-core repulsion = 14638.113805 eV Total energy + Delta-G solvation = -2783.032553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.90356 -38.09823 -35.96670 -32.86390 -31.41715 -30.77029 -28.41397 -28.17910 -26.61754 -23.33068 -22.78145 -21.55602 -20.00298 -18.30869 -17.07424 -16.68246 -16.40633 -15.90830 -15.61994 -14.97116 -14.56843 -13.88159 -13.69744 -13.45647 -13.07649 -12.94292 -12.76460 -12.49455 -12.33059 -12.02015 -11.62253 -11.52392 -11.17538 -11.03892 -10.61356 -10.36218 -10.03752 -9.69381 -9.51202 -9.28699 -9.07495 -8.70588 -7.47284 -6.64280 -6.19531 -4.20622 1.38168 1.79475 1.87345 2.67804 3.19162 3.28523 3.28964 3.45673 3.89258 3.96611 4.30347 4.93920 5.09303 5.12250 5.13240 5.15040 5.17470 5.35384 5.40214 5.51207 5.63945 5.72426 6.05064 6.08858 6.15706 6.27244 6.36776 6.55048 6.66692 6.88353 7.02044 7.52130 7.55285 7.85178 8.21096 8.34852 8.85072 9.40716 10.92966 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.004974 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.067620 B = 5628.222510 C = 6382.158539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.071 3.929 4 C -0.159 4.159 5 C -0.145 4.145 6 C 0.198 3.802 7 C -0.121 4.121 8 C -0.087 4.087 9 S -0.136 6.136 10 C -0.118 4.118 11 C 0.168 3.832 12 H 0.076 0.924 13 C -0.014 4.014 14 C -0.527 4.527 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.265 1.265 22 N -0.730 5.730 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.035 0.965 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -14.954 -5.073 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C 0.024 3.976 4 C -0.180 4.180 5 C -0.169 4.169 6 C 0.088 3.912 7 C -0.239 4.239 8 C -0.111 4.111 9 S 0.107 5.893 10 C -0.268 4.268 11 C 0.061 3.939 12 H 0.094 0.906 13 C -0.053 4.053 14 C -0.565 4.565 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.190 1.190 22 N -0.360 5.360 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.478 -15.782 -4.702 16.653 hybrid contribution -0.816 1.993 -0.964 2.360 sum -3.295 -13.789 -5.666 15.267 Atomic orbital electron populations 1.22943 0.79150 1.03271 1.01085 1.86022 1.20642 1.26941 1.90082 1.18428 0.91599 0.83980 1.03578 1.20930 0.99452 0.91761 1.05846 1.20629 0.92265 0.97709 1.06304 1.17555 0.91532 0.85485 0.96611 1.20628 0.96172 0.93902 1.13176 1.19696 0.91201 0.96036 1.04177 1.85078 0.99817 1.17550 1.86860 1.24350 1.04665 0.93846 1.03926 1.21140 0.79540 0.96268 0.96952 0.90648 1.19839 0.98130 0.89725 0.97644 1.21004 1.23363 0.90535 1.21626 0.90507 1.25005 0.95464 0.97167 0.95434 1.69899 1.40454 1.04193 1.38799 0.86810 0.82201 0.78906 0.81551 1.20252 1.21229 1.18988 1.44837 1.12455 1.05137 1.73539 0.93043 0.88787 0.92971 0.85697 0.85470 0.85262 0.89257 0.86717 0.94669 0.96119 0.92507 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.82 101.05 0.99 1.27 16 2 O -0.32 -4.27 10.50 -19.72 -0.21 -4.48 16 3 C 0.07 1.05 6.68 -39.31 -0.26 0.79 16 4 C -0.16 -2.20 9.03 -39.49 -0.36 -2.55 16 5 C -0.14 -2.23 9.76 -39.27 -0.38 -2.62 16 6 C 0.20 3.42 6.54 -83.49 -0.55 2.88 16 7 C -0.12 -2.05 6.07 -38.98 -0.24 -2.29 16 8 C -0.09 -1.36 9.65 -39.19 -0.38 -1.73 16 9 S -0.14 -2.17 22.12 -107.50 -2.38 -4.55 16 10 C -0.12 -1.89 5.97 37.46 0.22 -1.67 16 11 C 0.17 3.16 2.73 -67.90 -0.19 2.98 16 12 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 13 C -0.01 -0.31 3.57 -27.88 -0.10 -0.40 16 14 C -0.53 -13.77 9.07 -34.44 -0.31 -14.08 16 15 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 18 Si 0.88 20.34 27.47 -169.99 -4.67 15.68 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 22 N -0.73 -13.40 5.21 -51.99 -0.27 -13.67 16 23 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 26 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 27 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.04 0.75 7.20 -51.93 -0.37 0.37 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.41 7.69 7.96 -40.82 -0.32 7.37 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -29.08 293.69 -8.31 -37.38 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.34 Total: 6.27 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.64 Total: -15.58 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.50 Total: -39.16 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.21 Total: -4.48 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.38 Total: -4.55 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.08 -8.31 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214254590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.467 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds