Wall clock time and date at job start Mon Mar 30 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35995 * 117.00010 * 2 1 4 4 C 1.38705 * 120.10333 * 359.72873 * 3 2 1 5 5 C 1.38024 * 120.09901 * 179.90832 * 4 3 2 6 6 C 1.39275 * 120.53433 * 0.57791 * 5 4 3 7 7 C 1.39072 * 119.31554 * 359.33474 * 6 5 4 8 8 C 1.38499 * 120.10116 * 180.02562 * 3 2 1 9 9 S 1.76401 * 121.19481 * 180.86129 * 7 6 5 10 10 C 1.81682 * 102.59010 * 343.51404 * 9 7 6 11 11 C 1.53585 * 107.82373 * 47.14152 * 10 9 7 12 12 H 1.08996 * 109.61036 * 53.94609 * 11 10 9 13 13 C 1.53005 * 109.60667 * 174.45283 * 11 10 9 14 14 C 1.50702 * 109.46951 * 184.14204 * 13 11 10 15 15 H 1.08005 * 119.99695 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99951 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00022 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47023 * 90.00793 * 18 16 14 20 20 H 1.48503 * 109.47121 * 210.00358 * 18 16 14 21 21 H 1.48495 * 109.47295 * 330.00190 * 18 16 14 22 22 N 1.39876 * 117.87714 * 178.79918 * 6 5 4 23 23 H 1.08999 * 109.46969 * 59.99708 * 1 2 3 24 24 H 1.08995 * 109.47607 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46864 * 300.00327 * 1 2 3 26 26 H 1.07995 * 119.95178 * 0.16128 * 4 3 2 27 27 H 1.07995 * 119.73219 * 180.28105 * 5 4 3 28 28 H 1.08007 * 119.86849 * 359.97438 * 8 3 2 29 29 H 1.08995 * 109.78993 * 287.56259 * 10 9 7 30 30 H 1.08995 * 109.84040 * 166.75051 * 10 9 7 31 31 H 1.08993 * 109.47262 * 304.14293 * 13 11 10 32 32 H 1.08998 * 109.46800 * 64.14690 * 13 11 10 33 33 H 0.96999 * 120.00606 * 179.97438 * 17 16 14 34 34 H 0.97001 * 118.62135 * 341.78862 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2931 2.3764 -0.0057 5 6 1.9198 3.6061 -0.0038 6 6 3.3099 3.6919 -0.0082 7 6 4.0643 2.5235 -0.0006 8 6 3.4294 1.2866 -0.0005 9 16 5.8275 2.5745 0.0169 10 6 6.1792 4.2854 -0.4831 11 6 5.2757 5.2120 0.3439 12 1 5.4102 5.0024 1.4050 13 6 5.6352 6.6710 0.0555 14 6 4.8180 7.5745 0.9425 15 1 4.1130 7.1504 1.6423 16 6 4.9703 8.9423 0.8608 17 7 4.2574 9.7308 1.6352 18 14 6.1901 9.6756 -0.3491 19 1 5.5122 9.9231 -1.6469 20 1 6.7115 10.9576 0.1894 21 1 7.3164 8.7292 -0.5514 22 7 3.8865 4.9661 -0.0319 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2146 2.3209 -0.0075 27 1 1.3275 4.5091 -0.0036 28 1 4.0172 0.3805 -0.0005 29 1 5.9644 4.4113 -1.5442 30 1 7.2256 4.5201 -0.2881 31 1 6.6953 6.8298 0.2531 32 1 5.4223 6.8979 -0.9891 33 1 4.3648 10.6932 1.5780 34 1 3.3406 5.7180 -0.3102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214254590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:46 Heat of formation + Delta-G solvation = -30.691451 kcal Electronic energy + Delta-G solvation = -17421.917111 eV Core-core repulsion = 14638.113805 eV Total energy + Delta-G solvation = -2783.803306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03201 -39.31753 -37.30728 -34.77825 -32.84480 -32.01869 -29.98215 -29.35326 -27.63087 -25.03964 -23.95991 -22.91419 -21.48579 -19.39661 -19.01042 -18.04771 -17.63690 -17.15490 -16.53136 -16.33760 -16.21197 -15.23314 -15.00020 -14.76186 -14.61983 -14.16211 -14.08192 -14.06370 -13.59543 -13.27318 -13.09585 -12.86760 -12.48961 -12.19071 -12.18928 -11.82552 -11.71132 -11.49817 -11.04923 -10.77912 -10.54019 -10.38285 -8.71180 -8.28522 -7.92334 -6.33808 0.18299 0.57181 0.63371 1.38283 1.40254 1.41599 1.50694 2.35914 2.43073 2.62695 2.74184 3.09415 3.75862 3.81718 4.06937 4.08809 4.18853 4.29522 4.47970 4.48042 4.51614 4.60772 4.74165 4.77447 4.92231 4.93397 5.07667 5.21565 5.33608 5.37498 5.55139 5.58433 6.23216 6.42197 6.57103 6.72207 6.81267 7.30828 8.87650 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.004974 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.067620 B = 5628.222510 C = 6382.158539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.077 3.923 4 C -0.153 4.153 5 C -0.150 4.150 6 C 0.172 3.828 7 C -0.137 4.137 8 C -0.099 4.099 9 S -0.128 6.128 10 C -0.112 4.112 11 C 0.174 3.826 12 H 0.051 0.949 13 C -0.008 4.008 14 C -0.524 4.524 15 H 0.034 0.966 16 C 0.010 3.990 17 N -0.949 5.949 18 Si 0.947 3.053 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.240 1.240 22 N -0.739 5.739 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.060 0.940 26 H 0.156 0.844 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -16.347 -6.607 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.029 3.971 4 C -0.174 4.174 5 C -0.174 4.174 6 C 0.064 3.936 7 C -0.254 4.254 8 C -0.123 4.123 9 S 0.114 5.886 10 C -0.261 4.261 11 C 0.067 3.933 12 H 0.069 0.931 13 C -0.047 4.047 14 C -0.562 4.562 15 H 0.053 0.947 16 C -0.187 4.187 17 N -0.589 5.589 18 Si 0.771 3.229 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.163 1.163 22 N -0.370 5.370 23 H 0.081 0.919 24 H 0.137 0.863 25 H 0.079 0.921 26 H 0.174 0.826 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.115 0.885 30 H 0.153 0.847 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.234 -17.233 -6.242 18.464 hybrid contribution -1.083 2.268 -0.405 2.546 sum -3.318 -14.965 -6.647 16.708 Atomic orbital electron populations 1.23300 0.76740 1.05401 1.02055 1.86023 1.23118 1.26083 1.89705 1.18555 0.91523 0.84874 1.02114 1.21221 1.01003 0.90742 1.04396 1.20839 0.91790 0.98811 1.05969 1.17769 0.92437 0.85088 0.98268 1.20820 0.96704 0.94244 1.13645 1.19864 0.92064 0.95863 1.04545 1.84984 0.99498 1.17085 1.87038 1.24274 1.05012 0.93199 1.03651 1.20864 0.80755 0.95425 0.96284 0.93069 1.19739 0.97675 0.90380 0.96926 1.21236 1.22641 0.91308 1.21049 0.94734 1.25936 0.97587 0.97723 0.97491 1.70064 1.42945 1.04512 1.41366 0.85707 0.80247 0.78078 0.78886 1.19426 1.21661 1.16332 1.44754 1.12255 1.05509 1.74482 0.91852 0.86289 0.92105 0.82637 0.84816 0.84526 0.88481 0.84685 0.93588 0.94963 0.92569 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.40 16 2 O -0.33 -8.06 10.50 -93.49 -0.98 -9.05 16 3 C 0.08 2.13 6.68 22.44 0.15 2.28 16 4 C -0.15 -3.93 9.03 22.33 0.20 -3.73 16 5 C -0.15 -4.53 9.76 22.47 0.22 -4.31 16 6 C 0.17 5.94 6.54 38.31 0.25 6.19 16 7 C -0.14 -4.55 6.07 22.66 0.14 -4.41 16 8 C -0.10 -3.00 9.65 22.52 0.22 -2.78 16 9 S -0.13 -3.98 22.12 -56.49 -1.25 -5.23 16 10 C -0.11 -3.41 5.97 72.18 0.43 -2.98 16 11 C 0.17 6.53 2.73 45.28 0.12 6.65 16 12 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 13 C -0.01 -0.34 3.57 29.85 0.11 -0.23 16 14 C -0.52 -27.93 9.07 25.60 0.23 -27.70 16 15 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 16 C 0.01 0.55 5.47 84.65 0.46 1.02 16 17 N -0.95 -57.26 13.96 21.45 0.30 -56.96 16 18 Si 0.95 41.42 27.47 68.60 1.88 43.31 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.24 -9.46 6.54 99.48 0.65 -8.80 16 22 N -0.74 -27.45 5.21 -318.40 -1.66 -29.11 16 23 H 0.06 0.79 7.66 -2.39 -0.02 0.78 16 24 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 0.80 7.67 -2.39 -0.02 0.78 16 26 H 0.16 2.95 6.30 -2.91 -0.02 2.94 16 27 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.05 1.85 7.20 -2.39 -0.02 1.83 16 32 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 33 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.40 15.53 7.96 -92.71 -0.74 14.79 16 Total: -1.00 -63.66 293.69 2.26 -61.40 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.32 Total: 24.23 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.65 Total: -28.60 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.36 Total: -86.06 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.98 Total: -9.05 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.31 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -1.25 Total: -5.23 kcal Total: -63.66 2.26 -61.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214254590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.713 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds