Wall clock time and date at job start Mon Mar 30 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36021 * 116.99770 * 2 1 4 4 C 1.38240 * 119.62281 * 359.97438 * 3 2 1 5 5 C 1.38255 * 120.14730 * 180.10638 * 4 3 2 6 6 C 1.38031 * 119.66840 * 359.52782 * 5 4 3 7 7 C 1.39201 * 120.56893 * 359.96740 * 6 5 4 8 8 C 1.38763 * 120.27305 * 0.93620 * 7 6 5 9 9 N 1.39451 * 124.86452 * 178.47386 * 8 7 6 10 10 C 1.46905 * 110.99836 * 154.21876 * 9 8 7 11 11 C 1.45629 * 116.46578 * 25.91554 * 9 8 7 12 12 H 1.09001 * 109.53289 * 57.26083 * 11 9 8 13 13 C 1.50704 * 109.53627 * 177.42139 * 11 9 8 14 14 H 1.07995 * 119.99889 * 27.44204 * 13 11 9 15 15 C 1.37871 * 119.99867 * 207.71128 * 13 11 9 16 16 N 1.31512 * 120.00381 * 185.33445 * 15 13 11 17 17 Si 1.86801 * 119.99959 * 5.33869 * 15 13 11 18 18 H 1.48497 * 109.47252 * 84.53170 * 17 15 13 19 19 H 1.48506 * 109.47042 * 204.52965 * 17 15 13 20 20 H 1.48498 * 109.47514 * 324.52867 * 17 15 13 21 21 C 1.53726 * 109.07920 * 297.30247 * 11 9 8 22 22 S 1.76631 * 118.27606 * 181.75944 * 7 6 5 23 23 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46914 * 299.99715 * 1 2 3 25 25 H 1.08997 * 109.47373 * 59.99920 * 1 2 3 26 26 H 1.07994 * 119.92738 * 0.11410 * 4 3 2 27 27 H 1.07995 * 120.16755 * 179.55120 * 5 4 3 28 28 H 1.07999 * 119.71805 * 179.97438 * 6 5 4 29 29 H 1.08990 * 109.47196 * 319.82428 * 10 9 8 30 30 H 1.09008 * 109.47064 * 79.82372 * 10 9 8 31 31 H 1.08999 * 109.47170 * 199.81661 * 10 9 8 32 32 H 0.96994 * 120.00684 * 180.02562 * 16 15 13 33 33 H 1.08997 * 109.98213 * 189.90650 * 21 11 9 34 34 H 1.08999 * 109.98198 * 311.25483 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2859 2.3663 -0.0005 5 6 1.9022 3.6039 -0.0028 6 6 3.2804 3.6809 0.0054 7 6 4.0540 2.5237 0.0166 8 6 3.4467 1.2761 0.0000 9 7 4.1267 0.0588 -0.0213 10 6 3.3077 -1.0120 0.5622 11 6 5.4692 0.0553 0.5429 12 1 5.4311 0.3995 1.5765 13 6 6.0314 -1.3422 0.4975 14 1 5.6950 -2.0352 -0.2594 15 6 6.9708 -1.7378 1.4258 16 7 7.5386 -2.9197 1.3242 17 14 7.4372 -0.5951 2.8280 18 1 6.4656 -0.7536 3.9398 19 1 8.8005 -0.9337 3.3100 20 1 7.4165 0.8104 2.3491 21 6 6.3631 0.9960 -0.2812 22 16 5.8112 2.6925 0.0744 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2079 2.3013 0.0009 27 1 1.3084 4.5059 -0.0105 28 1 3.7626 4.6472 0.0033 29 1 2.7812 -0.6309 1.4372 30 1 2.5835 -1.3585 -0.1752 31 1 3.9505 -1.8413 0.8575 32 1 8.1993 -3.1982 1.9775 33 1 7.4051 0.8736 0.0144 34 1 6.2488 0.7822 -1.3439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214255206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:11 Heat of formation + Delta-G solvation = 20.288409 kcal Electronic energy + Delta-G solvation = -18536.023438 eV Core-core repulsion = 15754.430785 eV Total energy + Delta-G solvation = -2781.592653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34164 -37.50673 -36.51631 -32.97347 -30.87608 -30.08982 -29.07799 -27.31611 -25.63672 -24.36176 -22.50858 -21.72976 -19.87416 -18.09250 -17.27516 -16.32274 -15.79357 -15.58933 -15.54651 -15.01292 -14.36849 -14.07348 -13.67563 -13.26118 -12.98988 -12.76050 -12.46442 -12.00681 -11.77543 -11.67485 -11.51521 -11.27296 -11.03391 -10.87058 -10.62622 -10.43533 -9.94883 -9.77038 -9.59601 -8.95980 -8.92314 -8.66663 -7.21768 -6.54602 -6.34086 -4.36082 1.55792 1.77359 2.21240 2.93879 3.16547 3.25005 3.31108 3.69464 3.95728 4.20758 4.43969 4.96717 5.08551 5.21214 5.29976 5.31327 5.46473 5.61609 5.73787 5.74606 5.92179 6.05787 6.23161 6.27994 6.33894 6.47972 6.55337 6.73003 6.81140 6.87650 7.05829 7.20581 7.56298 7.72848 7.95973 8.38344 8.73410 9.25274 10.76392 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.008585 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.867305 B = 3260.801985 C = 4154.246427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.292 6.292 3 C 0.078 3.922 4 C -0.184 4.184 5 C -0.122 4.122 6 C -0.104 4.104 7 C -0.094 4.094 8 C 0.128 3.872 9 N -0.495 5.495 10 C 0.043 3.957 11 C 0.195 3.805 12 H 0.026 0.974 13 C -0.513 4.513 14 H 0.089 0.911 15 C 0.083 3.917 16 N -0.879 5.879 17 Si 0.860 3.140 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.254 1.254 21 C -0.077 4.077 22 S -0.182 6.182 23 H 0.093 0.907 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.270 0.730 33 H 0.109 0.891 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 8.733 -1.098 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.206 6.206 3 C 0.029 3.971 4 C -0.205 4.205 5 C -0.143 4.143 6 C -0.128 4.128 7 C -0.211 4.211 8 C 0.020 3.980 9 N -0.206 5.206 10 C -0.101 4.101 11 C 0.088 3.912 12 H 0.044 0.956 13 C -0.553 4.553 14 H 0.107 0.893 15 C -0.122 4.122 16 N -0.515 5.515 17 Si 0.685 3.315 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.178 1.178 21 C -0.225 4.225 22 S 0.062 5.938 23 H 0.111 0.889 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.875 9.156 -1.244 13.524 hybrid contribution -0.779 -0.173 1.073 1.337 sum -10.654 8.983 -0.172 13.937 Atomic orbital electron populations 1.23039 0.81729 1.03198 1.00574 1.87110 1.19197 1.24889 1.89442 1.18866 0.90642 0.85151 1.02465 1.20867 0.99263 0.92105 1.08296 1.20537 0.93773 0.96654 1.03324 1.20537 0.93242 0.96252 1.02778 1.20826 0.96579 0.93603 1.10073 1.18309 0.89088 0.89859 1.00724 1.56664 1.05013 1.02350 1.56539 1.22654 0.95298 0.94385 0.97766 1.19712 0.82740 0.97232 0.91468 0.95627 1.20718 1.23614 0.94458 1.16471 0.89263 1.24926 0.95052 0.94986 0.97286 1.69860 1.26520 1.19342 1.35746 0.87093 0.78447 0.82625 0.83290 1.19738 1.20808 1.17797 1.24698 1.03875 0.88960 1.04997 1.85192 0.98408 1.20547 1.89682 0.88865 0.93361 0.93333 0.85873 0.86056 0.85963 0.95283 0.89977 0.88111 0.91998 0.87323 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 101.05 0.99 1.10 16 2 O -0.29 -4.72 5.32 -19.81 -0.11 -4.83 16 3 C 0.08 1.37 6.23 -38.86 -0.24 1.13 16 4 C -0.18 -2.72 9.00 -39.57 -0.36 -3.07 16 5 C -0.12 -1.74 10.06 -39.65 -0.40 -2.14 16 6 C -0.10 -1.71 9.68 -39.30 -0.38 -2.09 16 7 C -0.09 -1.84 6.05 -39.03 -0.24 -2.07 16 8 C 0.13 2.61 5.97 -83.47 -0.50 2.11 16 9 N -0.49 -10.89 4.34 -172.91 -0.75 -11.64 16 10 C 0.04 0.88 7.99 60.07 0.48 1.36 16 11 C 0.20 4.57 1.37 -69.17 -0.09 4.48 16 12 H 0.03 0.64 5.64 -51.93 -0.29 0.35 16 13 C -0.51 -13.39 6.95 -34.44 -0.24 -13.63 16 14 H 0.09 2.55 7.81 -52.49 -0.41 2.14 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.88 -24.93 13.96 55.43 0.77 -24.16 16 17 Si 0.86 20.27 26.40 -169.99 -4.49 15.78 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.25 -5.84 6.54 56.52 0.37 -5.47 16 21 C -0.08 -1.67 5.70 37.53 0.21 -1.45 16 22 S -0.18 -3.61 22.13 -107.50 -2.38 -5.99 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.49 7.64 -51.93 -0.40 0.09 16 25 H 0.05 0.49 7.64 -51.93 -0.40 0.09 16 26 H 0.12 1.45 6.22 -52.49 -0.33 1.12 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.03 0.57 6.84 -51.93 -0.36 0.22 16 30 H 0.08 1.57 6.07 -52.02 -0.32 1.25 16 31 H 0.10 2.26 5.80 -51.93 -0.30 1.95 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.11 2.35 7.45 -51.93 -0.39 1.96 16 34 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 278.97 15.07 4.20 4.20 Total: -1.00 -28.54 278.97 -7.64 -36.19 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.04 Total: 2.60 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.86 Total: -12.15 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.02 Total: -35.80 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.11 Total: -4.83 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.49 Total: 15.78 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.38 Total: -5.99 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.54 -7.64 -36.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214255206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.475 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds