Wall clock time and date at job start Mon Mar 30 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36021 * 116.99770 * 2 1 4 4 C 1.38240 * 119.62281 * 359.97438 * 3 2 1 5 5 C 1.38255 * 120.14730 * 180.10638 * 4 3 2 6 6 C 1.38031 * 119.66840 * 359.52782 * 5 4 3 7 7 C 1.39201 * 120.56893 * 359.96740 * 6 5 4 8 8 C 1.38763 * 120.27305 * 0.93620 * 7 6 5 9 9 N 1.39451 * 124.86452 * 178.47386 * 8 7 6 10 10 C 1.46905 * 110.99836 * 154.21876 * 9 8 7 11 11 C 1.45629 * 116.46578 * 25.91554 * 9 8 7 12 12 H 1.09001 * 109.53289 * 57.26083 * 11 9 8 13 13 C 1.50704 * 109.53627 * 177.42139 * 11 9 8 14 14 H 1.07995 * 119.99889 * 27.44204 * 13 11 9 15 15 C 1.37871 * 119.99867 * 207.71128 * 13 11 9 16 16 N 1.31512 * 120.00381 * 185.33445 * 15 13 11 17 17 Si 1.86801 * 119.99959 * 5.33869 * 15 13 11 18 18 H 1.48497 * 109.47252 * 84.53170 * 17 15 13 19 19 H 1.48506 * 109.47042 * 204.52965 * 17 15 13 20 20 H 1.48498 * 109.47514 * 324.52867 * 17 15 13 21 21 C 1.53726 * 109.07920 * 297.30247 * 11 9 8 22 22 S 1.76631 * 118.27606 * 181.75944 * 7 6 5 23 23 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46914 * 299.99715 * 1 2 3 25 25 H 1.08997 * 109.47373 * 59.99920 * 1 2 3 26 26 H 1.07994 * 119.92738 * 0.11410 * 4 3 2 27 27 H 1.07995 * 120.16755 * 179.55120 * 5 4 3 28 28 H 1.07999 * 119.71805 * 179.97438 * 6 5 4 29 29 H 1.08990 * 109.47196 * 319.82428 * 10 9 8 30 30 H 1.09008 * 109.47064 * 79.82372 * 10 9 8 31 31 H 1.08999 * 109.47170 * 199.81661 * 10 9 8 32 32 H 0.96994 * 120.00684 * 180.02562 * 16 15 13 33 33 H 1.08997 * 109.98213 * 189.90650 * 21 11 9 34 34 H 1.08999 * 109.98198 * 311.25483 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2859 2.3663 -0.0005 5 6 1.9022 3.6039 -0.0028 6 6 3.2804 3.6809 0.0054 7 6 4.0540 2.5237 0.0166 8 6 3.4467 1.2761 0.0000 9 7 4.1267 0.0588 -0.0213 10 6 3.3077 -1.0120 0.5622 11 6 5.4692 0.0553 0.5429 12 1 5.4311 0.3995 1.5765 13 6 6.0314 -1.3422 0.4975 14 1 5.6950 -2.0352 -0.2594 15 6 6.9708 -1.7378 1.4258 16 7 7.5386 -2.9197 1.3242 17 14 7.4372 -0.5951 2.8280 18 1 6.4656 -0.7536 3.9398 19 1 8.8005 -0.9337 3.3100 20 1 7.4165 0.8104 2.3491 21 6 6.3631 0.9960 -0.2812 22 16 5.8112 2.6925 0.0744 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2079 2.3013 0.0009 27 1 1.3084 4.5059 -0.0105 28 1 3.7626 4.6472 0.0033 29 1 2.7812 -0.6309 1.4372 30 1 2.5835 -1.3585 -0.1752 31 1 3.9505 -1.8413 0.8575 32 1 8.1993 -3.1982 1.9775 33 1 7.4051 0.8736 0.0144 34 1 6.2488 0.7822 -1.3439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214255206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:11 Heat of formation + Delta-G solvation = 2.492377 kcal Electronic energy + Delta-G solvation = -18536.795132 eV Core-core repulsion = 15754.430785 eV Total energy + Delta-G solvation = -2782.364347 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.66727 -38.92279 -37.88402 -34.90455 -32.62832 -31.40468 -30.46216 -28.40329 -27.46377 -25.94132 -23.98437 -23.02401 -21.53424 -19.56361 -19.02065 -17.77095 -17.14417 -17.03600 -16.74533 -16.66350 -16.03045 -15.47566 -15.15759 -14.74424 -14.70308 -14.26407 -13.78368 -13.67359 -13.34659 -13.13510 -12.87090 -12.82807 -12.62935 -12.36088 -12.22328 -11.91579 -11.81301 -11.27160 -11.08743 -10.87186 -10.65363 -10.20297 -8.60383 -8.42165 -8.08437 -6.46982 0.24528 0.48807 0.69085 1.24367 1.31232 1.37200 1.42262 2.22852 2.55139 2.63166 2.88875 2.99561 3.95094 4.01078 4.05981 4.14424 4.27554 4.38412 4.48910 4.50390 4.56748 4.64794 4.65841 4.81781 4.88860 4.95052 5.05163 5.23012 5.29300 5.44924 5.52016 5.75991 5.96145 6.10845 6.39755 6.58264 6.70776 7.16998 8.72319 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.008585 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.867305 B = 3260.801985 C = 4154.246427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.316 6.316 3 C 0.073 3.927 4 C -0.176 4.176 5 C -0.100 4.100 6 C -0.112 4.112 7 C -0.116 4.116 8 C 0.084 3.916 9 N -0.512 5.512 10 C 0.059 3.941 11 C 0.204 3.796 12 H 0.012 0.988 13 C -0.507 4.507 14 H 0.051 0.949 15 C 0.038 3.962 16 N -0.924 5.924 17 Si 0.916 3.084 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.245 1.245 21 C -0.079 4.079 22 S -0.167 6.167 23 H 0.110 0.890 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.141 0.859 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.273 0.727 33 H 0.104 0.896 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 11.670 -0.726 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.231 6.231 3 C 0.025 3.975 4 C -0.197 4.197 5 C -0.121 4.121 6 C -0.135 4.135 7 C -0.233 4.233 8 C -0.021 4.021 9 N -0.224 5.224 10 C -0.086 4.086 11 C 0.096 3.904 12 H 0.029 0.971 13 C -0.547 4.547 14 H 0.069 0.931 15 C -0.163 4.163 16 N -0.562 5.562 17 Si 0.740 3.260 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.169 1.169 21 C -0.228 4.228 22 S 0.076 5.924 23 H 0.128 0.872 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.178 0.822 27 H 0.184 0.816 28 H 0.159 0.841 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.500 12.115 -0.882 17.430 hybrid contribution -0.244 -1.002 0.885 1.359 sum -12.744 11.113 0.003 16.909 Atomic orbital electron populations 1.23350 0.78801 1.04995 1.02027 1.86966 1.22059 1.24791 1.89289 1.19019 0.89935 0.86607 1.01986 1.21331 1.01008 0.91148 1.06197 1.21087 0.93098 0.98167 0.99762 1.20863 0.94281 0.95868 1.02529 1.21106 0.96120 0.94604 1.11438 1.18524 0.90627 0.89232 1.03765 1.56678 1.04467 1.03899 1.57371 1.22480 0.94726 0.93194 0.98171 1.19443 0.84263 0.95510 0.91153 0.97059 1.20731 1.23229 0.95545 1.15192 0.93071 1.25568 0.95083 0.96204 0.99471 1.69969 1.27843 1.21235 1.37103 0.86191 0.78261 0.81199 0.80367 1.19554 1.20138 1.16863 1.24369 1.03296 0.90927 1.04206 1.84970 0.99737 1.17676 1.90021 0.87214 0.91782 0.91727 0.82176 0.81605 0.84088 0.95003 0.88829 0.91335 0.91805 0.87790 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.80 113.37 1.11 1.16 16 2 O -0.32 -9.61 5.32 -93.78 -0.50 -10.11 16 3 C 0.07 2.41 6.23 22.74 0.14 2.55 16 4 C -0.18 -4.36 9.00 22.27 0.20 -4.16 16 5 C -0.10 -2.33 10.06 22.22 0.22 -2.11 16 6 C -0.11 -3.26 9.68 22.45 0.22 -3.04 16 7 C -0.12 -4.36 6.05 22.63 0.14 -4.22 16 8 C 0.08 3.37 5.97 38.53 0.23 3.60 16 9 N -0.51 -23.02 4.34 -700.95 -3.04 -26.06 16 10 C 0.06 2.48 7.99 127.69 1.02 3.50 16 11 C 0.20 9.83 1.37 44.65 0.06 9.89 16 12 H 0.01 0.59 5.64 -2.39 -0.01 0.58 16 13 C -0.51 -27.89 6.95 25.60 0.18 -27.71 16 14 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 15 C 0.04 2.12 5.47 84.65 0.46 2.58 16 16 N -0.92 -54.58 13.96 21.44 0.30 -54.28 16 17 Si 0.92 42.76 26.40 68.60 1.81 44.57 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 21 C -0.08 -3.51 5.70 72.23 0.41 -3.10 16 22 S -0.17 -6.50 22.13 -56.49 -1.25 -7.75 16 23 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.01 7.64 -2.39 -0.02 1.00 16 25 H 0.06 1.02 7.64 -2.39 -0.02 1.00 16 26 H 0.16 2.76 6.22 -2.91 -0.02 2.74 16 27 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.03 1.27 6.84 -2.39 -0.02 1.26 16 30 H 0.09 3.65 6.07 -3.84 -0.02 3.63 16 31 H 0.07 3.26 5.80 -2.39 -0.01 3.25 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.10 4.60 7.45 -2.39 -0.02 4.58 16 34 H 0.09 3.81 8.14 -2.39 -0.02 3.80 16 Total: -1.00 -64.50 278.97 2.76 -61.74 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.05 Total: 12.96 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.39 Total: -21.06 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.74 Total: -80.34 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.50 Total: -10.11 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.81 Total: 44.57 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.25 Total: -7.75 kcal Total: -64.50 2.76 -61.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214255206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.228 kcal (2) G-P(sol) polarization free energy of solvation -64.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds