Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38705 * 119.97482 * 359.97438 * 3 2 1 5 5 C 1.38102 * 119.84507 * 179.83300 * 4 3 2 6 6 C 1.38984 * 120.38287 * 0.11453 * 5 4 3 7 7 C 1.39075 * 120.02485 * 0.11612 * 6 5 4 8 8 C 1.38411 * 119.98061 * 179.72726 * 3 2 1 9 9 N 1.39580 * 122.86591 * 179.39773 * 7 6 5 10 10 C 1.45996 * 122.82577 * 18.28682 * 9 7 6 11 11 H 1.08999 * 109.61678 * 186.58735 * 10 9 7 12 12 C 1.53005 * 109.75742 * 66.15266 * 10 9 7 13 13 C 1.53593 * 108.60864 * 306.32721 * 10 9 7 14 14 H 1.08999 * 109.84344 * 306.24288 * 13 10 9 15 15 C 1.50698 * 109.79915 * 185.41300 * 13 10 9 16 16 H 1.08002 * 119.99605 * 1.66231 * 15 13 10 17 17 C 1.37872 * 120.00027 * 181.65741 * 15 13 10 18 18 N 1.31508 * 120.00258 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99794 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47122 * 60.00086 * 19 17 15 21 21 H 1.48500 * 109.46937 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47176 * 299.99835 * 19 17 15 23 23 S 1.76422 * 118.80176 * 180.33433 * 6 5 4 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 27 27 H 1.08004 * 120.07554 * 359.86654 * 4 3 2 28 28 H 1.08000 * 119.80701 * 180.13267 * 5 4 3 29 29 H 1.08001 * 119.78387 * 359.92152 * 8 3 2 30 30 H 0.97006 * 118.59147 * 198.26912 * 9 7 6 31 31 H 1.09002 * 109.46547 * 300.78948 * 12 10 9 32 32 H 1.08993 * 109.47487 * 60.79407 * 12 10 9 33 33 H 1.09002 * 109.46610 * 180.79889 * 12 10 9 34 34 H 0.97002 * 120.00432 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2906 2.3746 -0.0005 5 6 1.9204 3.6037 0.0030 6 6 3.3081 3.6825 0.0046 7 6 4.0711 2.5197 0.0003 8 6 3.4287 1.2835 0.0057 9 7 5.4668 2.5297 -0.0106 10 6 6.2529 3.7008 0.3665 11 1 7.3082 3.5120 0.1696 12 6 6.0536 4.0005 1.8536 13 6 5.7788 4.8991 -0.4692 14 1 5.8138 4.6480 -1.5293 15 6 6.6599 6.0912 -0.1978 16 1 7.4956 6.0016 0.4805 17 6 6.3993 7.2959 -0.8155 18 7 5.3815 7.4050 -1.6411 19 14 7.4920 8.7733 -0.4796 20 1 8.8868 8.4588 -0.8808 21 1 7.0034 9.9380 -1.2607 22 1 7.4547 9.0975 0.9691 23 16 4.0690 5.2741 0.0181 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2120 2.3191 -0.0031 28 1 1.3313 4.5088 0.0047 29 1 4.0131 0.3753 0.0114 30 1 5.9347 1.7238 -0.2802 31 1 4.9968 4.1828 2.0489 32 1 6.3907 3.1488 2.4443 33 1 6.6311 4.8836 2.1267 34 1 5.1978 8.2527 -2.0754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214256759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -12.693799 kcal Electronic energy + Delta-G solvation = -17856.172193 eV Core-core repulsion = 15073.149324 eV Total energy + Delta-G solvation = -2783.022869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64001 -37.86386 -35.70466 -33.17868 -31.28303 -29.81801 -28.07355 -27.20338 -26.77523 -23.89372 -22.34049 -21.55994 -19.56656 -17.58316 -17.20341 -16.37129 -15.84975 -15.45890 -15.34050 -14.84954 -14.24606 -13.79861 -13.32309 -13.25136 -12.86621 -12.74596 -12.37813 -12.05652 -11.73490 -11.54350 -11.19550 -11.06219 -10.99165 -10.63831 -10.58688 -10.57045 -10.06263 -9.55002 -9.29829 -8.78899 -8.55363 -8.20003 -7.11734 -6.32165 -5.70932 -4.37313 1.96911 2.08650 3.02036 3.24354 3.25414 3.27413 3.48639 4.10356 4.13349 4.27124 4.37477 5.15672 5.17955 5.26329 5.42374 5.45932 5.59163 5.70562 5.86439 5.98362 6.04997 6.13200 6.37888 6.49416 6.57399 6.64477 6.81965 6.96582 7.01208 7.04428 7.19008 7.56564 7.75472 7.82580 8.04084 8.22709 8.57245 9.20744 10.72503 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040078 B = 0.005537 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.476759 B = 5055.963418 C = 5485.767644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.137 3.863 4 C -0.246 4.246 5 C -0.038 4.038 6 C -0.170 4.170 7 C 0.242 3.758 8 C -0.217 4.217 9 N -0.745 5.745 10 C 0.150 3.850 11 H 0.087 0.913 12 C -0.156 4.156 13 C 0.079 3.921 14 H 0.050 0.950 15 C -0.497 4.497 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.841 5.841 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.272 1.272 23 S -0.147 6.147 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.390 0.610 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 -9.483 3.106 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.089 3.911 4 C -0.268 4.268 5 C -0.064 4.064 6 C -0.287 4.287 7 C 0.132 3.868 8 C -0.242 4.242 9 N -0.372 5.372 10 C 0.043 3.957 11 H 0.105 0.895 12 C -0.215 4.215 13 C -0.047 4.047 14 H 0.068 0.932 15 C -0.542 4.542 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.475 5.475 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 S 0.104 5.896 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.223 0.777 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.087 -8.166 3.285 10.166 hybrid contribution 0.833 -0.576 -0.376 1.081 sum -4.254 -8.743 2.908 10.148 Atomic orbital electron populations 1.22922 0.79255 1.02941 1.01215 1.86001 1.20679 1.27756 1.89477 1.18411 0.91522 0.83489 0.97642 1.20794 0.98889 0.92130 1.15007 1.20446 0.92287 0.96632 0.97025 1.21826 0.96309 0.98777 1.11789 1.17116 0.83865 0.91791 0.94027 1.19741 0.91558 0.96305 1.16593 1.44682 1.01916 1.15825 1.74817 1.21250 0.94086 0.85431 0.94917 0.89531 1.22286 1.03742 1.00548 0.94911 1.21472 0.90745 0.95135 0.97328 0.93177 1.20770 1.11841 0.93995 1.27553 0.90785 1.25173 0.95280 0.99397 0.94209 1.69993 1.25862 1.26180 1.25455 0.86468 0.80539 0.81294 0.78836 1.19809 1.20902 1.19690 1.86388 1.15789 1.03362 1.84095 0.89030 0.92968 0.92987 0.86412 0.86111 0.86325 0.77727 0.91353 0.94493 0.90917 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.33 -4.96 10.50 -19.71 -0.21 -5.17 16 3 C 0.14 2.38 6.68 -39.35 -0.26 2.11 16 4 C -0.25 -4.17 9.04 -39.46 -0.36 -4.53 16 5 C -0.04 -0.74 9.70 -39.35 -0.38 -1.12 16 6 C -0.17 -3.67 5.65 -38.99 -0.22 -3.90 16 7 C 0.24 4.81 6.18 -83.62 -0.52 4.29 16 8 C -0.22 -3.91 9.70 -39.12 -0.38 -4.29 16 9 N -0.74 -13.70 5.17 -52.06 -0.27 -13.97 16 10 C 0.15 2.97 3.28 -67.89 -0.22 2.75 16 11 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 12 C -0.16 -2.98 8.79 37.16 0.33 -2.66 16 13 C 0.08 1.91 2.41 -27.58 -0.07 1.84 16 14 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.50 -12.53 7.89 -34.44 -0.27 -12.80 16 16 H 0.07 1.77 7.20 -52.49 -0.38 1.40 16 17 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 18 N -0.84 -22.98 12.19 55.43 0.68 -22.31 16 19 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 S -0.15 -3.58 18.39 -107.50 -1.98 -5.55 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 26 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 27 H 0.12 1.65 6.30 -52.48 -0.33 1.32 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.12 1.91 8.05 -52.49 -0.42 1.49 16 30 H 0.39 6.03 8.76 -40.82 -0.36 5.67 16 31 H 0.07 1.43 6.09 -51.93 -0.32 1.11 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.40 7.07 -51.93 -0.37 1.04 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 289.24 15.07 4.36 4.36 Total: -1.00 -28.51 289.24 -8.11 -36.62 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.22 Total: 6.48 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.45 Total: -15.25 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.41 Total: -36.28 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.21 Total: -5.17 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.98 Total: -5.55 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.51 -8.11 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214256759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.923 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds