Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38705 * 119.97482 * 359.97438 * 3 2 1 5 5 C 1.38102 * 119.84507 * 179.83300 * 4 3 2 6 6 C 1.38984 * 120.38287 * 0.11453 * 5 4 3 7 7 C 1.39075 * 120.02485 * 0.11612 * 6 5 4 8 8 C 1.38411 * 119.98061 * 179.72726 * 3 2 1 9 9 N 1.39580 * 122.86591 * 179.39773 * 7 6 5 10 10 C 1.45996 * 122.82577 * 18.28682 * 9 7 6 11 11 H 1.08999 * 109.61678 * 186.58735 * 10 9 7 12 12 C 1.53005 * 109.75742 * 66.15266 * 10 9 7 13 13 C 1.53593 * 108.60864 * 306.32721 * 10 9 7 14 14 H 1.08999 * 109.84344 * 306.24288 * 13 10 9 15 15 C 1.50698 * 109.79915 * 185.41300 * 13 10 9 16 16 H 1.08002 * 119.99605 * 1.66231 * 15 13 10 17 17 C 1.37872 * 120.00027 * 181.65741 * 15 13 10 18 18 N 1.31508 * 120.00258 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99794 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47122 * 60.00086 * 19 17 15 21 21 H 1.48500 * 109.46937 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47176 * 299.99835 * 19 17 15 23 23 S 1.76422 * 118.80176 * 180.33433 * 6 5 4 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 27 27 H 1.08004 * 120.07554 * 359.86654 * 4 3 2 28 28 H 1.08000 * 119.80701 * 180.13267 * 5 4 3 29 29 H 1.08001 * 119.78387 * 359.92152 * 8 3 2 30 30 H 0.97006 * 118.59147 * 198.26912 * 9 7 6 31 31 H 1.09002 * 109.46547 * 300.78948 * 12 10 9 32 32 H 1.08993 * 109.47487 * 60.79407 * 12 10 9 33 33 H 1.09002 * 109.46610 * 180.79889 * 12 10 9 34 34 H 0.97002 * 120.00432 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2906 2.3746 -0.0005 5 6 1.9204 3.6037 0.0030 6 6 3.3081 3.6825 0.0046 7 6 4.0711 2.5197 0.0003 8 6 3.4287 1.2835 0.0057 9 7 5.4668 2.5297 -0.0106 10 6 6.2529 3.7008 0.3665 11 1 7.3082 3.5120 0.1696 12 6 6.0536 4.0005 1.8536 13 6 5.7788 4.8991 -0.4692 14 1 5.8138 4.6480 -1.5293 15 6 6.6599 6.0912 -0.1978 16 1 7.4956 6.0016 0.4805 17 6 6.3993 7.2959 -0.8155 18 7 5.3815 7.4050 -1.6411 19 14 7.4920 8.7733 -0.4796 20 1 8.8868 8.4588 -0.8808 21 1 7.0034 9.9380 -1.2607 22 1 7.4547 9.0975 0.9691 23 16 4.0690 5.2741 0.0181 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2120 2.3191 -0.0031 28 1 1.3313 4.5088 0.0047 29 1 4.0131 0.3753 0.0114 30 1 5.9347 1.7238 -0.2802 31 1 4.9968 4.1828 2.0489 32 1 6.3907 3.1488 2.4443 33 1 6.6311 4.8836 2.1267 34 1 5.1978 8.2527 -2.0754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214256759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -29.888970 kcal Electronic energy + Delta-G solvation = -17856.917832 eV Core-core repulsion = 15073.149324 eV Total energy + Delta-G solvation = -2783.768508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98022 -39.25804 -37.21487 -35.00910 -32.87678 -31.20779 -29.64937 -28.80089 -27.88116 -25.69708 -23.78538 -23.07158 -21.09939 -19.15437 -18.78730 -17.81224 -17.54071 -16.71981 -16.60058 -16.48714 -15.75145 -15.46630 -14.91306 -14.71529 -14.45193 -14.28474 -13.83603 -13.35228 -13.12721 -13.07181 -12.90156 -12.69107 -12.36063 -12.34187 -12.16033 -11.85871 -11.70930 -11.36082 -10.88124 -10.61344 -10.37381 -9.66849 -8.64778 -8.23108 -7.49709 -6.37906 0.49829 0.63601 1.28102 1.44437 1.53619 1.55524 2.23364 2.35660 2.40473 2.83824 2.88988 3.23375 3.94653 4.10390 4.23782 4.33393 4.38804 4.48070 4.52987 4.55639 4.62401 4.78056 4.94024 5.03968 5.06755 5.13460 5.23182 5.37683 5.46129 5.54443 5.57408 5.65800 5.91532 6.43220 6.56529 6.63187 6.88766 7.24535 8.78901 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040078 B = 0.005537 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.476759 B = 5055.963418 C = 5485.767644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.147 3.853 4 C -0.239 4.239 5 C -0.045 4.045 6 C -0.200 4.200 7 C 0.232 3.768 8 C -0.221 4.221 9 N -0.740 5.740 10 C 0.156 3.844 11 H 0.106 0.894 12 C -0.145 4.145 13 C 0.085 3.915 14 H 0.007 0.993 15 C -0.511 4.511 16 H 0.084 0.916 17 C 0.022 3.978 18 N -0.880 5.880 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.268 1.268 23 S -0.202 6.202 24 H 0.122 0.878 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.151 0.849 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.406 0.594 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 -11.412 3.961 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.099 3.901 4 C -0.261 4.261 5 C -0.070 4.070 6 C -0.316 4.316 7 C 0.123 3.877 8 C -0.246 4.246 9 N -0.369 5.369 10 C 0.049 3.951 11 H 0.124 0.876 12 C -0.204 4.204 13 C -0.041 4.041 14 H 0.025 0.975 15 C -0.554 4.554 16 H 0.102 0.898 17 C -0.185 4.185 18 N -0.515 5.515 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.212 1.212 22 H -0.193 1.193 23 S 0.046 5.954 24 H 0.140 0.860 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.157 0.843 30 H 0.241 0.759 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.447 -10.150 4.143 12.242 hybrid contribution 0.750 -0.181 -0.658 1.014 sum -4.697 -10.331 3.486 11.872 Atomic orbital electron populations 1.23320 0.76610 1.05410 1.02148 1.86014 1.23338 1.26384 1.88850 1.18552 0.91553 0.84436 0.95606 1.21065 1.00575 0.90926 1.13536 1.20607 0.91621 0.97932 0.96803 1.21760 0.97301 0.97291 1.15267 1.17274 0.84391 0.91997 0.94080 1.19936 0.92381 0.96132 1.16172 1.44558 1.01604 1.15942 1.74797 1.21146 0.94964 0.84353 0.94659 0.87626 1.22147 1.02269 1.01387 0.94585 1.21299 0.90435 0.96779 0.95628 0.97463 1.21120 1.12296 0.94514 1.27481 0.89783 1.25989 0.96361 1.02170 0.93943 1.70152 1.27793 1.26570 1.26984 0.85464 0.79125 0.77756 0.78594 1.18616 1.21209 1.19254 1.86279 1.17045 1.06961 1.85148 0.86014 0.92085 0.91899 0.83112 0.85989 0.84295 0.75919 0.93499 0.91787 0.91505 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.33 -8.93 10.50 -93.45 -0.98 -9.91 16 3 C 0.15 4.68 6.68 22.42 0.15 4.83 16 4 C -0.24 -7.55 9.04 22.35 0.20 -7.34 16 5 C -0.04 -1.72 9.70 22.42 0.22 -1.50 16 6 C -0.20 -8.71 5.65 22.65 0.13 -8.59 16 7 C 0.23 9.08 6.18 38.37 0.24 9.32 16 8 C -0.22 -7.51 9.70 22.57 0.22 -7.29 16 9 N -0.74 -26.64 5.17 -318.61 -1.65 -28.28 16 10 C 0.16 6.15 3.28 45.29 0.15 6.30 16 11 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 12 C -0.15 -5.45 8.79 71.98 0.63 -4.82 16 13 C 0.09 4.23 2.41 30.05 0.07 4.31 16 14 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 15 C -0.51 -26.27 7.89 25.60 0.20 -26.07 16 16 H 0.08 4.03 7.20 -2.91 -0.02 4.01 16 17 C 0.02 1.16 5.29 84.65 0.45 1.60 16 18 N -0.88 -49.98 12.19 21.44 0.26 -49.72 16 19 Si 0.97 41.22 29.54 68.60 2.03 43.24 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 S -0.20 -10.23 18.39 -56.49 -1.04 -11.27 16 24 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 26 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 27 H 0.15 3.67 6.30 -2.91 -0.02 3.66 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.14 4.07 8.05 -2.91 -0.02 4.05 16 30 H 0.41 11.88 8.76 -92.70 -0.81 11.07 16 31 H 0.05 1.96 6.09 -2.39 -0.01 1.95 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.55 7.07 -2.39 -0.02 2.53 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -63.42 289.24 2.70 -60.72 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.31 Total: 23.03 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 3.77 Total: -27.80 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.39 Total: -78.00 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.98 Total: -9.91 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: -10.23 SS G_CDS: -1.04 Total: -11.27 kcal Total: -63.42 2.70 -60.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214256759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.833 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds