Wall clock time and date at job start Mon Mar 30 2020 06:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47431 * 240.00132 * 3 2 1 5 5 H 1.48504 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47462 * 119.99842 * 3 2 1 7 7 C 1.39939 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00421 * 196.90972 * 7 2 1 9 9 C 1.41395 * 119.99876 * 16.90835 * 7 2 1 10 10 C 1.40748 * 120.24032 * 25.10935 * 9 7 2 11 11 C 1.37594 * 119.77304 * 179.97438 * 10 9 7 12 12 C 1.38639 * 120.26505 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.75873 * 179.97438 * 12 11 10 14 14 N 1.46891 * 109.47361 * 254.98561 * 13 12 11 15 15 C 1.48533 * 111.00425 * 59.54040 * 14 13 12 16 16 C 1.54933 * 103.22842 * 159.71832 * 15 14 13 17 17 C 1.54601 * 102.92511 * 322.59540 * 16 15 14 18 18 C 1.47901 * 111.00166 * 176.94430 * 14 13 12 19 19 C 1.38736 * 120.48319 * 0.27558 * 12 11 10 20 20 Cl 1.73605 * 119.88599 * 179.74682 * 19 12 11 21 21 C 1.37757 * 120.22399 * 359.48621 * 19 12 11 22 22 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.10605 * 359.95277 * 10 9 7 24 24 H 1.07997 * 119.87014 * 179.97438 * 11 10 9 25 25 H 1.09007 * 109.46934 * 14.98597 * 13 12 11 26 26 H 1.08997 * 109.47184 * 134.98110 * 13 12 11 27 27 H 1.08997 * 110.67050 * 278.15868 * 15 14 13 28 28 H 1.09004 * 110.66098 * 41.29086 * 15 14 13 29 29 H 1.08999 * 110.72992 * 204.22762 * 16 15 14 30 30 H 1.09010 * 110.72272 * 80.94952 * 16 15 14 31 31 H 1.09002 * 110.30329 * 263.03468 * 17 16 15 32 32 H 1.09001 * 110.31034 * 140.87230 * 17 16 15 33 33 H 1.08999 * 109.91811 * 333.50550 * 18 14 13 34 34 H 1.08996 * 109.92187 * 94.60482 * 18 14 13 35 35 H 1.07996 * 120.13177 * 180.23922 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0529 -1.2323 0.2715 9 6 1.3468 -2.4098 -0.3572 10 6 0.2124 -2.3726 -1.1895 11 6 -0.4232 -3.5442 -1.5310 12 6 0.0498 -4.7589 -1.0591 13 6 -0.6555 -6.0351 -1.4398 14 7 -1.4330 -6.5255 -0.2940 15 6 -2.4417 -5.5225 0.1334 16 6 -3.4644 -6.3672 0.9341 17 6 -3.5189 -7.6908 0.1371 18 6 -2.1981 -7.7392 -0.6531 19 6 1.1639 -4.8077 -0.2339 20 17 1.7390 -6.3368 0.3535 21 6 1.8186 -3.6475 0.1167 22 1 -0.4850 0.8401 0.0004 23 1 -0.1580 -1.4276 -1.5585 24 1 -1.2940 -3.5174 -2.1692 25 1 -1.3254 -5.8438 -2.2782 26 1 0.0809 -6.7855 -1.7271 27 1 -1.9852 -4.7653 0.7708 28 1 -2.9173 -5.0621 -0.7327 29 1 -4.4407 -5.8827 0.9447 30 1 -3.1088 -6.5427 1.9495 31 1 -4.3685 -7.6864 -0.5458 32 1 -3.5841 -8.5398 0.8177 33 1 -2.4055 -7.7444 -1.7231 34 1 -1.6315 -8.6296 -0.3806 35 1 2.6881 -3.6876 0.7560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216946611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:02 Heat of formation + Delta-G solvation = 3.161942 kcal Electronic energy + Delta-G solvation = -17722.901619 eV Core-core repulsion = 14938.522600 eV Total energy + Delta-G solvation = -2784.379019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.79227 -37.40124 -35.32410 -33.93142 -32.17253 -29.75159 -29.01480 -28.47848 -26.36302 -23.57544 -21.35183 -20.76792 -20.53116 -19.78273 -17.46820 -15.79950 -15.60334 -15.32445 -14.45462 -14.30895 -14.08168 -13.47958 -12.91879 -12.84633 -12.38468 -12.31920 -11.94906 -11.77709 -11.49432 -11.25946 -11.17511 -11.01840 -10.79301 -10.75059 -10.53041 -10.36746 -10.16280 -10.07397 -9.76003 -9.43683 -9.19540 -7.92401 -7.56470 -7.28105 -6.87279 -4.48178 2.60972 2.81622 3.01647 3.03623 3.10481 3.38833 3.85992 4.35885 4.64146 4.93934 4.97684 5.17371 5.52427 5.57754 5.70715 5.77868 5.90875 5.94698 5.95877 6.04952 6.19178 6.27315 6.32503 6.41054 6.52862 6.81366 6.91048 6.98797 7.14124 7.28452 7.38374 7.47853 7.68630 7.87560 7.89207 8.08155 8.47402 8.74637 8.78316 10.06993 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.005538 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.397264 B = 5055.160886 C = 5705.892406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.121 3.879 10 C -0.163 4.163 11 C -0.085 4.085 12 C -0.207 4.207 13 C 0.113 3.887 14 N -0.504 5.504 15 C 0.045 3.955 16 C -0.125 4.125 17 C -0.129 4.129 18 C 0.034 3.966 19 C 0.033 3.967 20 Cl -0.114 7.114 21 C -0.223 4.223 22 H 0.283 0.717 23 H 0.122 0.878 24 H 0.092 0.908 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -7.345 -1.259 8.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.118 3.882 10 C -0.182 4.182 11 C -0.104 4.104 12 C -0.209 4.209 13 C -0.014 4.014 14 N -0.228 5.228 15 C -0.083 4.083 16 C -0.163 4.163 17 C -0.167 4.167 18 C -0.094 4.094 19 C 0.006 3.994 20 Cl -0.086 7.086 21 C -0.243 4.243 22 H 0.094 0.906 23 H 0.140 0.860 24 H 0.110 0.890 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.482 -7.437 -0.790 8.718 hybrid contribution -0.215 0.855 -0.581 1.056 sum -4.697 -6.581 -1.371 8.201 Atomic orbital electron populations 1.69800 1.07625 1.29582 1.34409 1.25923 0.94765 1.01437 0.92090 0.86316 0.80133 0.79920 0.80121 1.18710 1.20259 1.18876 1.19571 0.97901 0.90919 1.40189 0.90167 1.17502 0.91033 0.91358 0.88300 1.21354 0.99179 0.96826 1.00851 1.20472 0.98323 0.92033 0.99569 1.18719 0.99919 0.93587 1.08699 1.20842 0.95520 0.95009 0.90071 1.64887 1.20957 1.03386 1.33562 1.23102 0.91774 0.95130 0.98285 1.22493 0.98785 0.95344 0.99660 1.22371 0.97055 0.98426 0.98822 1.22831 0.93734 0.95392 0.97447 1.20337 0.96245 0.84325 0.98457 1.98255 1.88820 1.33452 1.88067 1.20897 1.04424 0.91185 1.07807 0.90615 0.86048 0.89027 0.95649 0.91240 0.89681 0.94355 0.91648 0.91011 0.92108 0.91542 0.94560 0.90972 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.60 10.94 55.55 0.61 -18.99 16 2 C 0.08 1.85 5.16 -17.35 -0.09 1.76 16 3 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.70 9.06 -37.74 -0.34 -12.04 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.12 3.12 5.57 -106.83 -0.59 2.52 16 10 C -0.16 -4.03 8.69 -38.87 -0.34 -4.37 16 11 C -0.08 -1.88 9.45 -39.67 -0.37 -2.26 16 12 C -0.21 -4.43 4.49 -104.29 -0.47 -4.89 16 13 C 0.11 2.06 4.26 -4.98 -0.02 2.04 16 14 N -0.50 -8.62 5.20 -231.91 -1.21 -9.83 16 15 C 0.04 0.75 5.62 -1.90 -0.01 0.74 16 16 C -0.12 -1.68 7.06 -24.87 -0.18 -1.85 16 17 C -0.13 -1.55 6.93 -25.37 -0.18 -1.73 16 18 C 0.03 0.48 6.70 -2.76 -0.02 0.46 16 19 C 0.03 0.74 6.30 -39.57 -0.25 0.49 16 20 Cl -0.11 -2.27 27.49 -51.86 -1.43 -3.70 16 21 C -0.22 -5.42 9.57 -38.84 -0.37 -5.79 16 22 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 23 H 0.12 3.10 6.17 -52.49 -0.32 2.77 16 24 H 0.09 1.84 7.99 -52.49 -0.42 1.42 16 25 H 0.03 0.44 7.78 -51.92 -0.40 0.04 16 26 H 0.07 1.26 7.58 -51.93 -0.39 0.86 16 27 H 0.08 1.65 7.98 -51.93 -0.41 1.24 16 28 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -25.55 301.54 -10.59 -36.14 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.86 Total: 3.75 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -3.23 Total: -24.92 kcal Atomic # 7 Polarization: -28.22 SS G_CDS: -0.60 Total: -28.82 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -1.43 Total: -3.70 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.55 -10.59 -36.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216946611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -25.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds