Wall clock time and date at job start Mon Mar 30 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47431 * 240.00132 * 3 2 1 5 5 H 1.48504 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47462 * 119.99842 * 3 2 1 7 7 C 1.39939 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00421 * 196.90972 * 7 2 1 9 9 C 1.41395 * 119.99876 * 16.90835 * 7 2 1 10 10 C 1.40748 * 120.24032 * 25.10935 * 9 7 2 11 11 C 1.37594 * 119.77304 * 179.97438 * 10 9 7 12 12 C 1.38639 * 120.26505 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.75873 * 179.97438 * 12 11 10 14 14 N 1.46891 * 109.47361 * 254.98561 * 13 12 11 15 15 C 1.48533 * 111.00425 * 59.54040 * 14 13 12 16 16 C 1.54933 * 103.22842 * 159.71832 * 15 14 13 17 17 C 1.54601 * 102.92511 * 322.59540 * 16 15 14 18 18 C 1.47901 * 111.00166 * 176.94430 * 14 13 12 19 19 C 1.38736 * 120.48319 * 0.27558 * 12 11 10 20 20 Cl 1.73605 * 119.88599 * 179.74682 * 19 12 11 21 21 C 1.37757 * 120.22399 * 359.48621 * 19 12 11 22 22 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.10605 * 359.95277 * 10 9 7 24 24 H 1.07997 * 119.87014 * 179.97438 * 11 10 9 25 25 H 1.09007 * 109.46934 * 14.98597 * 13 12 11 26 26 H 1.08997 * 109.47184 * 134.98110 * 13 12 11 27 27 H 1.08997 * 110.67050 * 278.15868 * 15 14 13 28 28 H 1.09004 * 110.66098 * 41.29086 * 15 14 13 29 29 H 1.08999 * 110.72992 * 204.22762 * 16 15 14 30 30 H 1.09010 * 110.72272 * 80.94952 * 16 15 14 31 31 H 1.09002 * 110.30329 * 263.03468 * 17 16 15 32 32 H 1.09001 * 110.31034 * 140.87230 * 17 16 15 33 33 H 1.08999 * 109.91811 * 333.50550 * 18 14 13 34 34 H 1.08996 * 109.92187 * 94.60482 * 18 14 13 35 35 H 1.07996 * 120.13177 * 180.23922 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0529 -1.2323 0.2715 9 6 1.3468 -2.4098 -0.3572 10 6 0.2124 -2.3726 -1.1895 11 6 -0.4232 -3.5442 -1.5310 12 6 0.0498 -4.7589 -1.0591 13 6 -0.6555 -6.0351 -1.4398 14 7 -1.4330 -6.5255 -0.2940 15 6 -2.4417 -5.5225 0.1334 16 6 -3.4644 -6.3672 0.9341 17 6 -3.5189 -7.6908 0.1371 18 6 -2.1981 -7.7392 -0.6531 19 6 1.1639 -4.8077 -0.2339 20 17 1.7390 -6.3368 0.3535 21 6 1.8186 -3.6475 0.1167 22 1 -0.4850 0.8401 0.0004 23 1 -0.1580 -1.4276 -1.5585 24 1 -1.2940 -3.5174 -2.1692 25 1 -1.3254 -5.8438 -2.2782 26 1 0.0809 -6.7855 -1.7271 27 1 -1.9852 -4.7653 0.7708 28 1 -2.9173 -5.0621 -0.7327 29 1 -4.4407 -5.8827 0.9447 30 1 -3.1088 -6.5427 1.9495 31 1 -4.3685 -7.6864 -0.5458 32 1 -3.5841 -8.5398 0.8177 33 1 -2.4055 -7.7444 -1.7231 34 1 -1.6315 -8.6296 -0.3806 35 1 2.6881 -3.6876 0.7560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216946611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:01 Heat of formation + Delta-G solvation = -9.395674 kcal Electronic energy + Delta-G solvation = -17723.446158 eV Core-core repulsion = 14938.522600 eV Total energy + Delta-G solvation = -2784.923558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24873 -38.98419 -37.05502 -35.67794 -33.66755 -31.41279 -30.79964 -29.65122 -28.02228 -25.19163 -23.10541 -22.35110 -21.59451 -21.34612 -19.33007 -17.31246 -17.01994 -16.72736 -16.10787 -15.91574 -15.73463 -14.87832 -14.50865 -14.20404 -14.10203 -13.95468 -13.41927 -13.16186 -13.15145 -12.83545 -12.65135 -12.30255 -12.15380 -12.14791 -11.93159 -11.86483 -11.81591 -11.56223 -11.38474 -11.16656 -10.99276 -9.45275 -9.22805 -9.07667 -8.68253 -6.40058 0.83859 0.93544 1.38969 1.48856 1.51853 1.62258 2.20139 2.62023 3.26616 3.64529 3.85388 3.85839 4.11821 4.25041 4.33548 4.41392 4.54660 4.69318 4.75714 4.83871 4.94648 4.98354 5.01872 5.06792 5.12705 5.15852 5.25703 5.29632 5.37103 5.45168 5.76811 5.95480 5.98856 6.16085 6.20846 6.27556 6.58415 6.86311 6.89523 8.28522 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.005538 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.397264 B = 5055.160886 C = 5705.892406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.494 4.494 8 H 0.077 0.923 9 C 0.093 3.907 10 C -0.182 4.182 11 C -0.083 4.083 12 C -0.197 4.197 13 C 0.118 3.882 14 N -0.520 5.520 15 C 0.044 3.956 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.032 3.968 19 C 0.024 3.976 20 Cl -0.089 7.089 21 C -0.240 4.240 22 H 0.291 0.709 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 -8.459 -1.593 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.095 0.905 9 C 0.091 3.909 10 C -0.202 4.202 11 C -0.102 4.102 12 C -0.199 4.199 13 C -0.009 4.009 14 N -0.244 5.244 15 C -0.084 4.084 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.096 4.096 19 C -0.003 4.003 20 Cl -0.061 7.061 21 C -0.261 4.261 22 H 0.101 0.899 23 H 0.126 0.874 24 H 0.131 0.869 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.515 -8.579 -1.122 10.260 hybrid contribution 0.068 1.034 -0.469 1.138 sum -5.447 -7.544 -1.591 9.440 Atomic orbital electron populations 1.69844 1.08949 1.30879 1.34816 1.26731 0.95503 1.04417 0.91044 0.85238 0.78810 0.75536 0.80087 1.18398 1.19025 1.18499 1.19810 0.98110 0.92165 1.42261 0.90490 1.17810 0.91882 0.92151 0.89088 1.21328 0.99796 0.97253 1.01775 1.20695 0.98525 0.91612 0.99334 1.19100 0.99136 0.94836 1.06844 1.20779 0.95884 0.93331 0.90947 1.64794 1.21943 1.04507 1.33180 1.23026 0.92354 0.94944 0.98118 1.22468 0.98494 0.95744 0.99049 1.22359 0.96562 0.97926 0.98969 1.22927 0.94411 0.93781 0.98465 1.20479 0.96368 0.85011 0.98420 1.98251 1.88578 1.31464 1.87766 1.20984 1.04892 0.91751 1.08452 0.89866 0.87389 0.86875 0.94388 0.90792 0.93372 0.94433 0.89906 0.91494 0.90266 0.89904 0.93554 0.90374 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.71 10.94 21.82 0.24 -41.47 16 2 C 0.04 1.92 5.16 85.26 0.44 2.36 16 3 Si 0.98 37.32 29.59 68.60 2.03 39.35 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.49 -26.33 9.06 23.46 0.21 -26.11 16 8 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 9 C 0.09 5.01 5.57 -21.29 -0.12 4.89 16 10 C -0.18 -9.31 8.69 22.73 0.20 -9.11 16 11 C -0.08 -3.69 9.45 22.21 0.21 -3.48 16 12 C -0.20 -8.35 4.49 -19.65 -0.09 -8.43 16 13 C 0.12 4.09 4.26 85.56 0.36 4.46 16 14 N -0.52 -16.82 5.20 -887.61 -4.61 -21.43 16 15 C 0.04 1.41 5.62 86.65 0.49 1.89 16 16 C -0.12 -2.93 7.06 31.80 0.22 -2.71 16 17 C -0.12 -2.46 6.93 31.47 0.22 -2.24 16 18 C 0.03 0.78 6.70 86.45 0.58 1.36 16 19 C 0.02 1.09 6.30 22.27 0.14 1.23 16 20 Cl -0.09 -3.47 27.49 -2.72 -0.07 -3.54 16 21 C -0.24 -12.06 9.57 22.75 0.22 -11.84 16 22 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 23 H 0.11 5.73 6.17 -2.91 -0.02 5.72 16 24 H 0.11 4.47 7.99 -2.91 -0.02 4.45 16 25 H 0.04 1.23 7.78 -2.38 -0.02 1.21 16 26 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 27 H 0.05 1.89 7.98 -2.39 -0.02 1.87 16 28 H 0.04 1.20 8.00 -2.38 -0.02 1.18 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.07 7.69 -2.39 -0.02 1.05 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -55.90 301.54 1.74 -54.17 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.07 Total: 20.67 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 3.08 Total: -47.74 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -4.38 Total: -62.90 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.07 Total: -3.54 kcal Total: -55.90 1.74 -54.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216946611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.770 kcal (2) G-P(sol) polarization free energy of solvation -55.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds