Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47139 * 2 1 4 4 C 1.46495 * 120.00297 * 278.42191 * 3 2 1 5 5 C 1.50704 * 109.47152 * 269.99821 * 4 3 2 6 6 H 1.08006 * 119.99597 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00279 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46967 * 60.00596 * 9 7 5 11 11 H 1.48506 * 109.47094 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47271 * 300.00149 * 9 7 5 13 13 C 1.34780 * 119.99357 * 98.41757 * 3 2 1 14 14 O 1.21602 * 119.99376 * 186.56970 * 13 3 2 15 15 C 1.47475 * 120.00218 * 6.56950 * 13 3 2 16 16 C 1.39833 * 120.06181 * 150.28936 * 15 13 3 17 17 C 1.37089 * 119.93613 * 180.02562 * 16 15 13 18 18 C 1.39303 * 120.06396 * 0.02562 * 17 16 15 19 19 S 1.76196 * 119.93741 * 179.97438 * 18 17 16 20 20 C 1.39298 * 120.12630 * 0.23483 * 18 17 16 21 21 C 1.37098 * 120.06590 * 359.48413 * 20 18 17 22 22 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47093 * 299.99360 * 1 2 3 24 24 H 1.08997 * 109.47659 * 59.99398 * 1 2 3 25 25 H 1.09007 * 109.47093 * 240.00640 * 2 1 3 26 26 H 1.08997 * 109.47659 * 120.00602 * 2 1 3 27 27 H 1.09003 * 109.47397 * 29.99618 * 4 3 2 28 28 H 1.08997 * 109.47315 * 149.99662 * 4 3 2 29 29 H 0.96996 * 120.00044 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.03306 * 359.97438 * 16 15 13 31 31 H 1.08005 * 119.97024 * 179.97438 * 17 16 15 32 32 H 1.34509 * 103.00042 * 90.00054 * 19 18 17 33 33 H 1.08003 * 119.96804 * 179.72611 * 20 18 17 34 34 H 1.07998 * 120.03485 * 180.25930 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0873 2.1339 -1.2550 5 6 3.4362 1.9235 -1.8934 6 1 4.1685 1.2919 -1.4125 7 6 3.7348 2.5363 -3.0917 8 7 2.8427 3.3050 -3.6775 9 14 5.4070 2.2760 -3.8827 10 1 5.6036 0.8306 -4.1603 11 1 5.4769 3.0389 -5.1550 12 1 6.4699 2.7523 -2.9615 13 6 2.4040 1.9596 1.1547 14 8 2.6955 3.1399 1.1758 15 6 2.4726 1.1608 2.3926 16 6 3.3951 1.4921 3.3898 17 6 3.4570 0.7476 4.5392 18 6 2.6023 -0.3385 4.7140 19 16 2.6852 -1.2936 6.1923 20 6 1.6861 -0.6742 3.7200 21 6 1.6157 0.0703 2.5709 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3069 1.7850 -1.9313 28 1 1.9435 3.1948 -1.0508 29 1 3.0530 3.7364 -4.5204 30 1 4.0588 2.3333 3.2543 31 1 4.1696 1.0027 5.3097 32 1 1.8129 -0.6702 7.0046 33 1 1.0277 -1.5195 3.8563 34 1 0.9023 -0.1879 1.8023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233430849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = 22.179094 kcal Electronic energy + Delta-G solvation = -17686.208333 eV Core-core repulsion = 14904.697666 eV Total energy + Delta-G solvation = -2781.510667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22766 -37.93376 -35.70615 -33.03290 -31.35968 -31.14788 -30.14102 -27.26170 -24.20728 -23.34890 -22.59645 -22.06099 -19.18801 -18.29227 -16.93868 -16.43701 -16.38525 -15.67765 -14.94633 -14.81454 -14.41391 -14.11662 -13.82524 -13.51114 -12.91934 -12.84084 -12.45871 -12.08866 -12.01542 -11.68678 -11.24367 -11.14882 -10.97815 -10.86212 -10.69202 -10.53401 -10.16924 -9.70983 -9.19161 -9.05725 -8.77129 -8.46412 -8.39705 -7.75337 -6.07878 -4.13276 0.56492 1.29012 1.47283 2.54591 3.20425 3.30431 3.34850 3.37912 3.71775 3.97890 4.41722 4.68860 4.82264 4.87654 5.15595 5.26544 5.33052 5.34425 5.49378 5.55419 5.66051 5.88925 5.89874 6.09406 6.14762 6.17333 6.33871 6.44801 6.68752 7.01425 7.38752 7.45893 7.87988 8.18180 8.29602 8.81350 8.97071 9.52009 11.00172 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029000 B = 0.004697 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.284694 B = 5959.297629 C = 6316.935967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 N -0.584 5.584 4 C 0.245 3.755 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.542 3.458 14 O -0.535 6.535 15 C -0.087 4.087 16 C -0.075 4.075 17 C -0.080 4.080 18 C -0.100 4.100 19 S -0.135 6.135 20 C -0.082 4.082 21 C -0.130 4.130 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -10.133 14.698 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.052 4.052 3 N -0.314 5.314 4 C 0.126 3.874 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.329 3.671 14 O -0.413 6.413 15 C -0.091 4.091 16 C -0.095 4.095 17 C -0.101 4.101 18 C -0.212 4.212 19 S 0.022 5.978 20 C -0.102 4.102 21 C -0.150 4.150 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.040 0.960 33 H 0.154 0.846 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.555 -10.018 15.168 18.522 hybrid contribution 0.192 0.932 -0.845 1.272 sum -3.362 -9.086 14.323 17.292 Atomic orbital electron populations 1.22295 0.96477 1.01955 1.02877 1.22300 0.93782 0.84811 1.04279 1.48158 1.61218 1.13284 1.08770 1.19339 0.97200 0.92730 0.78121 1.21391 0.99794 1.29943 1.05805 0.92430 1.24926 0.97318 0.94819 0.96902 1.69920 1.34436 1.30958 1.17944 0.86547 0.84123 0.78206 0.78500 1.20184 1.21129 1.20141 1.18090 0.78807 0.87092 0.83161 1.90772 1.49489 1.15467 1.85584 1.20574 0.96911 0.95869 0.95706 1.21198 0.97451 0.99056 0.91823 1.21389 0.97640 0.93280 0.97765 1.21438 1.01984 1.00281 0.97512 1.85977 1.59055 1.41879 1.10921 1.21408 0.96990 0.99249 0.92572 1.22448 1.00346 0.94126 0.98057 0.91580 0.92447 0.91180 0.89989 0.88730 0.94702 0.93548 0.92591 0.84216 0.84547 0.96050 0.84574 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.13 37.16 0.34 -1.94 16 2 C 0.07 1.13 5.58 -4.04 -0.02 1.10 16 3 N -0.58 -12.26 2.46 -176.31 -0.43 -12.69 16 4 C 0.24 6.32 5.22 -5.19 -0.03 6.29 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.54 11.50 7.45 -12.50 -0.09 11.40 16 14 O -0.53 -13.56 16.25 5.28 0.09 -13.47 16 15 C -0.09 -1.43 5.60 -104.94 -0.59 -2.02 16 16 C -0.07 -1.11 9.56 -39.40 -0.38 -1.48 16 17 C -0.08 -0.98 9.75 -39.60 -0.39 -1.37 16 18 C -0.10 -1.17 6.13 -38.79 -0.24 -1.41 16 19 S -0.14 -1.37 25.77 -107.50 -2.77 -4.14 16 20 C -0.08 -0.92 9.75 -39.60 -0.39 -1.31 16 21 C -0.13 -1.70 7.45 -39.40 -0.29 -2.00 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.70 7.07 -51.93 -0.37 0.34 16 24 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 25 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 26 H 0.10 1.28 4.00 -52.28 -0.21 1.08 16 27 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 28 H 0.05 1.35 7.34 -51.93 -0.38 0.97 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.14 2.10 7.91 -52.49 -0.42 1.68 16 31 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.08 0.69 9.07 97.61 0.89 1.57 16 33 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.17 1.98 2.53 -52.49 -0.13 1.84 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -31.99 301.32 -8.03 -40.02 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -2.68 Total: 0.92 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.49 Total: -6.27 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.30 Total: -38.25 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.77 Total: -4.14 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.99 -8.03 -40.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233430849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.200 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds