Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47139 * 2 1 4 4 C 1.46495 * 120.00297 * 278.42191 * 3 2 1 5 5 C 1.50704 * 109.47152 * 269.99821 * 4 3 2 6 6 H 1.08006 * 119.99597 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00279 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46967 * 60.00596 * 9 7 5 11 11 H 1.48506 * 109.47094 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47271 * 300.00149 * 9 7 5 13 13 C 1.34780 * 119.99357 * 98.41757 * 3 2 1 14 14 O 1.21602 * 119.99376 * 186.56970 * 13 3 2 15 15 C 1.47475 * 120.00218 * 6.56950 * 13 3 2 16 16 C 1.39833 * 120.06181 * 150.28936 * 15 13 3 17 17 C 1.37089 * 119.93613 * 180.02562 * 16 15 13 18 18 C 1.39303 * 120.06396 * 0.02562 * 17 16 15 19 19 S 1.76196 * 119.93741 * 179.97438 * 18 17 16 20 20 C 1.39298 * 120.12630 * 0.23483 * 18 17 16 21 21 C 1.37098 * 120.06590 * 359.48413 * 20 18 17 22 22 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47093 * 299.99360 * 1 2 3 24 24 H 1.08997 * 109.47659 * 59.99398 * 1 2 3 25 25 H 1.09007 * 109.47093 * 240.00640 * 2 1 3 26 26 H 1.08997 * 109.47659 * 120.00602 * 2 1 3 27 27 H 1.09003 * 109.47397 * 29.99618 * 4 3 2 28 28 H 1.08997 * 109.47315 * 149.99662 * 4 3 2 29 29 H 0.96996 * 120.00044 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.03306 * 359.97438 * 16 15 13 31 31 H 1.08005 * 119.97024 * 179.97438 * 17 16 15 32 32 H 1.34509 * 103.00042 * 90.00054 * 19 18 17 33 33 H 1.08003 * 119.96804 * 179.72611 * 20 18 17 34 34 H 1.07998 * 120.03485 * 180.25930 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0873 2.1339 -1.2550 5 6 3.4362 1.9235 -1.8934 6 1 4.1685 1.2919 -1.4125 7 6 3.7348 2.5363 -3.0917 8 7 2.8427 3.3050 -3.6775 9 14 5.4070 2.2760 -3.8827 10 1 5.6036 0.8306 -4.1603 11 1 5.4769 3.0389 -5.1550 12 1 6.4699 2.7523 -2.9615 13 6 2.4040 1.9596 1.1547 14 8 2.6955 3.1399 1.1758 15 6 2.4726 1.1608 2.3926 16 6 3.3951 1.4921 3.3898 17 6 3.4570 0.7476 4.5392 18 6 2.6023 -0.3385 4.7140 19 16 2.6852 -1.2936 6.1923 20 6 1.6861 -0.6742 3.7200 21 6 1.6157 0.0703 2.5709 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3069 1.7850 -1.9313 28 1 1.9435 3.1948 -1.0508 29 1 3.0530 3.7364 -4.5204 30 1 4.0588 2.3333 3.2543 31 1 4.1696 1.0027 5.3097 32 1 1.8129 -0.6702 7.0046 33 1 1.0277 -1.5195 3.8563 34 1 0.9023 -0.1879 1.8023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233430849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = 2.529851 kcal Electronic energy + Delta-G solvation = -17687.060388 eV Core-core repulsion = 14904.697666 eV Total energy + Delta-G solvation = -2782.362722 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59441 -39.27169 -37.31913 -35.06220 -32.75667 -32.27424 -31.41432 -29.17883 -25.81855 -24.74475 -23.71964 -23.50321 -20.63030 -19.21560 -18.67979 -18.27269 -17.61327 -16.99314 -16.49679 -16.24167 -15.84916 -15.51888 -15.08209 -14.77398 -14.43557 -14.07802 -13.87033 -13.53516 -13.34412 -13.19465 -13.08695 -12.66394 -12.51922 -12.22728 -12.19413 -11.81001 -11.77053 -11.75318 -10.81894 -10.66208 -10.08678 -9.89160 -9.51708 -9.16828 -8.24914 -6.40354 -0.50701 0.29005 0.59532 1.36115 1.40299 1.47611 1.60846 1.93096 2.21781 2.39950 2.69850 3.04841 3.49657 3.74218 3.85611 4.05705 4.25942 4.29757 4.33277 4.52170 4.55832 4.82162 4.90790 4.93419 5.00634 5.06041 5.14341 5.18421 5.29729 5.38396 5.52128 5.66602 5.79328 6.02136 6.62086 6.69375 7.19661 7.35123 8.82285 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029000 B = 0.004697 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.284694 B = 5959.297629 C = 6316.935967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.064 3.936 3 N -0.589 5.589 4 C 0.260 3.740 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.534 3.466 14 O -0.595 6.595 15 C -0.114 4.114 16 C -0.087 4.087 17 C -0.075 4.075 18 C -0.098 4.098 19 S -0.119 6.119 20 C -0.070 4.070 21 C -0.123 4.123 22 H 0.109 0.891 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.029 0.971 28 H -0.001 1.001 29 H 0.268 0.732 30 H 0.124 0.876 31 H 0.160 0.840 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -13.188 16.439 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.057 4.057 3 N -0.318 5.318 4 C 0.139 3.861 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.323 3.677 14 O -0.477 6.477 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.095 4.095 18 C -0.211 4.211 19 S 0.038 5.962 20 C -0.090 4.090 21 C -0.142 4.142 22 H 0.128 0.872 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.141 0.859 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.177 0.823 32 H 0.052 0.948 33 H 0.191 0.809 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.584 -13.129 16.921 21.715 hybrid contribution 0.152 1.835 -1.242 2.221 sum -3.432 -11.294 15.679 19.626 Atomic orbital electron populations 1.22256 0.93911 1.04552 1.02167 1.22701 0.95867 0.81809 1.05332 1.48163 1.61375 1.15068 1.07241 1.18785 0.96315 0.90839 0.80126 1.21664 1.00560 1.30152 1.06316 0.92878 1.25851 1.01346 0.94280 0.97428 1.70042 1.36515 1.31654 1.18397 0.85464 0.78820 0.79048 0.77473 1.18367 1.20188 1.20335 1.18902 0.77312 0.86877 0.84590 1.90717 1.52089 1.18193 1.86746 1.20231 0.99919 0.97513 0.94056 1.21170 0.97470 0.99446 0.92733 1.21588 0.98032 0.92901 0.96983 1.21735 1.01032 0.99648 0.98640 1.86005 1.59505 1.40898 1.09823 1.21788 0.96701 0.99339 0.91142 1.22500 0.99527 0.92913 0.99252 0.87201 0.91688 0.93429 0.90772 0.85852 0.95335 0.98282 0.92282 0.85794 0.82290 0.94765 0.80922 0.80190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 9.13 71.98 0.66 -3.44 16 2 C 0.06 1.97 5.58 86.38 0.48 2.45 16 3 N -0.59 -25.78 2.46 -829.96 -2.04 -27.83 16 4 C 0.26 14.28 5.22 85.64 0.45 14.72 16 5 C -0.55 -31.98 9.39 25.60 0.24 -31.74 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.60 5.46 84.65 0.46 1.06 16 8 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 9 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.53 23.82 7.45 86.68 0.65 24.47 16 14 O -0.59 -32.53 16.25 -4.04 -0.07 -32.60 16 15 C -0.11 -3.75 5.60 -20.07 -0.11 -3.87 16 16 C -0.09 -2.60 9.56 22.39 0.21 -2.39 16 17 C -0.07 -1.67 9.75 22.26 0.22 -1.45 16 18 C -0.10 -1.96 6.13 22.78 0.14 -1.82 16 19 S -0.12 -1.91 25.77 -56.49 -1.46 -3.37 16 20 C -0.07 -1.28 9.75 22.26 0.22 -1.07 16 21 C -0.12 -2.91 7.45 22.39 0.17 -2.74 16 22 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.47 7.07 -2.38 -0.02 1.45 16 24 H 0.05 1.36 7.93 -2.39 -0.02 1.34 16 25 H 0.07 2.39 8.13 -2.38 -0.02 2.37 16 26 H 0.12 3.10 4.00 -2.71 -0.01 3.09 16 27 H 0.03 1.57 7.86 -2.39 -0.02 1.55 16 28 H 0.00 -0.06 7.34 -2.39 -0.02 -0.08 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.12 3.98 7.91 -2.91 -0.02 3.95 16 31 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.09 1.23 9.07 73.35 0.67 1.90 16 33 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.18 3.72 2.53 -2.91 -0.01 3.71 16 Total: -1.00 -74.15 301.32 4.32 -69.83 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.79 Total: 8.72 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 3.78 Total: -5.82 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.76 Total: -83.79 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.07 Total: -32.60 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -1.46 Total: -3.37 kcal Total: -74.15 4.32 -69.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233430849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.364 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds