Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46950 * 2 1 4 4 C 1.50693 * 109.47000 * 119.99263 * 2 1 3 5 5 H 1.08000 * 120.00300 * 120.00609 * 4 2 1 6 6 C 1.37887 * 120.00428 * 300.00393 * 4 2 1 7 7 N 1.31515 * 119.99385 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00279 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47059 * 59.99946 * 8 6 4 10 10 H 1.48497 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47203 * 299.99910 * 8 6 4 12 12 N 1.46494 * 109.47557 * 239.99461 * 2 1 3 13 13 C 1.46499 * 119.99817 * 300.00317 * 12 2 1 14 14 C 1.34779 * 120.00181 * 119.99527 * 12 2 1 15 15 O 1.21550 * 119.99690 * 4.39083 * 14 12 2 16 16 C 1.47864 * 119.99896 * 184.38525 * 14 12 2 17 17 C 1.39627 * 120.11023 * 320.15681 * 16 14 12 18 18 C 1.37996 * 120.01455 * 179.74265 * 17 16 14 19 19 C 1.38222 * 120.23510 * 0.55813 * 18 17 16 20 20 C 1.39043 * 120.21209 * 359.69962 * 19 18 17 21 21 S 1.76207 * 120.00633 * 180.02562 * 20 19 18 22 22 C 1.38736 * 119.98134 * 0.02562 * 20 19 18 23 23 H 1.09001 * 109.46991 * 60.00789 * 1 2 3 24 24 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47364 * 300.00549 * 1 2 3 26 26 H 0.97002 * 119.99726 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47172 * 271.82555 * 13 12 2 28 28 H 1.09000 * 109.46976 * 151.82658 * 13 12 2 29 29 H 1.08998 * 109.47228 * 31.82504 * 13 12 2 30 30 H 1.07997 * 119.98805 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.88294 * 180.27191 * 18 17 16 32 32 H 1.07999 * 119.89495 * 179.71715 * 19 18 17 33 33 H 1.34496 * 102.99873 * 270.01744 * 21 20 19 34 34 H 1.08012 * 120.11682 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9434 0.8305 2.6033 8 14 2.3224 -1.1191 4.0081 9 1 3.8074 -1.1184 4.0079 10 1 1.8277 -0.4187 5.2205 11 1 1.8280 -2.5193 4.0084 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4277 14 6 2.7933 -0.0357 -2.0833 15 8 3.1527 1.1022 -1.8525 16 6 3.2061 -0.7016 -3.3373 17 6 3.5686 -2.0499 -3.3280 18 6 3.9485 -2.6707 -4.5004 19 6 3.9829 -1.9595 -5.6851 20 6 3.6289 -0.6150 -5.7045 21 16 3.6741 0.2863 -7.2179 22 6 3.2402 0.0166 -4.5320 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7087 1.1617 3.4843 27 1 2.3982 -2.7379 -0.9437 28 1 1.6557 -2.2935 -2.4992 29 1 0.6764 -2.2920 -1.0128 30 1 3.5474 -2.6082 -2.4037 31 1 4.2243 -3.7149 -4.4915 32 1 4.2854 -2.4497 -6.5986 33 1 4.9280 0.7722 -7.2434 34 1 2.9644 1.0608 -4.5447 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235104625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 3.915921 kcal Electronic energy + Delta-G solvation = -17701.385986 eV Core-core repulsion = 14919.083368 eV Total energy + Delta-G solvation = -2782.302618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00194 -38.01664 -35.44978 -33.08901 -31.35480 -31.14507 -29.08480 -26.39959 -25.25804 -23.85156 -22.88578 -21.10373 -19.18951 -17.82868 -16.67892 -16.54142 -16.24437 -15.62229 -15.14461 -14.81198 -14.31303 -14.20639 -13.70726 -13.10519 -13.05478 -12.64133 -12.38720 -11.93212 -11.66703 -11.55355 -11.48577 -11.08877 -10.85657 -10.76903 -10.67447 -10.30542 -10.19090 -9.24219 -9.19774 -9.04215 -8.88093 -8.45710 -8.33079 -7.67371 -6.09847 -4.18188 0.74074 1.08074 1.53888 2.62296 3.18783 3.26208 3.31645 3.33207 3.73906 3.89979 4.37265 4.74596 4.78852 4.97149 5.14315 5.21737 5.30080 5.50862 5.66815 5.78285 5.97263 6.09348 6.16604 6.23393 6.28836 6.63844 6.73457 6.79286 7.00843 7.36177 7.46449 7.67360 7.97027 8.14780 8.43435 8.77121 8.94386 9.48094 10.95499 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.004539 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.666473 B = 6167.140635 C = 6485.531099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.077 3.923 14 C 0.543 3.457 15 O -0.544 6.544 16 C -0.120 4.120 17 C -0.067 4.067 18 C -0.135 4.135 19 C -0.061 4.061 20 C -0.118 4.118 21 S -0.131 6.131 22 C -0.024 4.024 23 H 0.012 0.988 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -7.772 -14.956 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.066 4.066 14 C 0.330 3.670 15 O -0.423 6.423 16 C -0.125 4.125 17 C -0.085 4.085 18 C -0.155 4.155 19 C -0.081 4.081 20 C -0.230 4.230 21 S 0.026 5.974 22 C -0.045 4.045 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.039 0.961 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.195 -6.623 -15.481 17.138 hybrid contribution 1.281 -0.771 1.841 2.372 sum 4.476 -7.394 -13.639 16.147 Atomic orbital electron populations 1.22105 0.98008 0.99503 1.00997 1.19003 0.90963 0.94558 0.79704 0.91754 1.21248 1.32026 1.13052 0.90219 0.92323 1.24891 0.94910 0.94964 0.98963 1.69866 1.36212 1.22505 1.23940 0.86537 0.79235 0.79552 0.81950 1.20258 1.21136 1.20209 1.48183 1.48187 1.11677 1.23227 1.21932 1.01746 0.83150 0.99785 1.18194 0.79689 0.86080 0.83078 1.90753 1.55726 1.18395 1.77425 1.20294 1.03008 0.94514 0.94715 1.21917 0.93735 0.93466 0.99395 1.21144 1.01755 1.00477 0.92104 1.21667 0.95301 0.92674 0.98504 1.21072 1.09769 0.96617 0.95556 1.85953 1.20044 1.66607 1.24769 1.21665 0.92915 1.00091 0.89837 0.96853 0.94988 0.88656 0.92570 0.92911 0.92040 0.90790 0.83979 0.84830 0.84819 0.96058 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.94 37.16 0.33 -3.16 16 2 C 0.26 6.53 2.63 -69.09 -0.18 6.35 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.08 8.37 -34.44 -0.29 -14.36 16 5 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.58 -12.36 2.75 -176.37 -0.49 -12.85 16 13 C 0.08 1.27 8.14 59.85 0.49 1.75 16 14 C 0.54 11.48 7.35 -12.32 -0.09 11.39 16 15 O -0.54 -13.70 16.26 5.32 0.09 -13.61 16 16 C -0.12 -1.96 5.22 -104.99 -0.55 -2.51 16 17 C -0.07 -0.87 7.46 -39.15 -0.29 -1.16 16 18 C -0.14 -1.39 10.02 -39.68 -0.40 -1.79 16 19 C -0.06 -0.64 9.78 -39.29 -0.38 -1.02 16 20 C -0.12 -1.49 6.11 -39.10 -0.24 -1.73 16 21 S -0.13 -1.47 25.77 -107.50 -2.77 -4.24 16 22 C -0.02 -0.36 9.38 -38.95 -0.37 -0.72 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.03 0.69 6.67 -51.93 -0.35 0.34 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.05 0.80 7.23 -51.93 -0.38 0.43 16 28 H 0.06 0.83 5.37 -51.93 -0.28 0.55 16 29 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 30 H 0.14 1.74 5.56 -52.49 -0.29 1.44 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.08 0.78 9.07 97.61 0.89 1.67 16 34 H 0.14 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -30.54 297.19 -7.78 -38.33 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -2.64 Total: 1.64 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.06 Total: -5.29 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.14 Total: -37.11 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.77 Total: -4.24 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.54 -7.78 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235104625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.242 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds