Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46950 * 2 1 4 4 C 1.50693 * 109.47000 * 119.99263 * 2 1 3 5 5 H 1.08000 * 120.00300 * 120.00609 * 4 2 1 6 6 C 1.37887 * 120.00428 * 300.00393 * 4 2 1 7 7 N 1.31515 * 119.99385 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00279 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47059 * 59.99946 * 8 6 4 10 10 H 1.48497 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47203 * 299.99910 * 8 6 4 12 12 N 1.46494 * 109.47557 * 239.99461 * 2 1 3 13 13 C 1.46499 * 119.99817 * 300.00317 * 12 2 1 14 14 C 1.34779 * 120.00181 * 119.99527 * 12 2 1 15 15 O 1.21550 * 119.99690 * 4.39083 * 14 12 2 16 16 C 1.47864 * 119.99896 * 184.38525 * 14 12 2 17 17 C 1.39627 * 120.11023 * 320.15681 * 16 14 12 18 18 C 1.37996 * 120.01455 * 179.74265 * 17 16 14 19 19 C 1.38222 * 120.23510 * 0.55813 * 18 17 16 20 20 C 1.39043 * 120.21209 * 359.69962 * 19 18 17 21 21 S 1.76207 * 120.00633 * 180.02562 * 20 19 18 22 22 C 1.38736 * 119.98134 * 0.02562 * 20 19 18 23 23 H 1.09001 * 109.46991 * 60.00789 * 1 2 3 24 24 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47364 * 300.00549 * 1 2 3 26 26 H 0.97002 * 119.99726 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47172 * 271.82555 * 13 12 2 28 28 H 1.09000 * 109.46976 * 151.82658 * 13 12 2 29 29 H 1.08998 * 109.47228 * 31.82504 * 13 12 2 30 30 H 1.07997 * 119.98805 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.88294 * 180.27191 * 18 17 16 32 32 H 1.07999 * 119.89495 * 179.71715 * 19 18 17 33 33 H 1.34496 * 102.99873 * 270.01744 * 21 20 19 34 34 H 1.08012 * 120.11682 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9434 0.8305 2.6033 8 14 2.3224 -1.1191 4.0081 9 1 3.8074 -1.1184 4.0079 10 1 1.8277 -0.4187 5.2205 11 1 1.8280 -2.5193 4.0084 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4277 14 6 2.7933 -0.0357 -2.0833 15 8 3.1527 1.1022 -1.8525 16 6 3.2061 -0.7016 -3.3373 17 6 3.5686 -2.0499 -3.3280 18 6 3.9485 -2.6707 -4.5004 19 6 3.9829 -1.9595 -5.6851 20 6 3.6289 -0.6150 -5.7045 21 16 3.6741 0.2863 -7.2179 22 6 3.2402 0.0166 -4.5320 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7087 1.1617 3.4843 27 1 2.3982 -2.7379 -0.9437 28 1 1.6557 -2.2935 -2.4992 29 1 0.6764 -2.2920 -1.0128 30 1 3.5474 -2.6082 -2.4037 31 1 4.2243 -3.7149 -4.4915 32 1 4.2854 -2.4497 -6.5986 33 1 4.9280 0.7722 -7.2434 34 1 2.9644 1.0608 -4.5447 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235104625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = -14.701756 kcal Electronic energy + Delta-G solvation = -17702.193309 eV Core-core repulsion = 14919.083368 eV Total energy + Delta-G solvation = -2783.109941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37925 -39.32220 -37.24620 -34.94428 -32.74165 -32.14609 -30.78051 -27.85360 -27.31532 -25.18717 -23.88759 -22.66678 -20.66682 -19.06287 -18.47000 -17.74953 -17.65232 -17.12888 -16.48313 -16.39989 -15.70855 -15.51542 -14.85404 -14.58667 -14.43447 -14.25544 -13.84915 -13.49039 -13.01333 -12.98829 -12.83033 -12.72255 -12.63008 -12.55550 -12.19601 -12.13216 -11.70001 -11.21186 -10.81970 -10.52562 -10.06933 -9.93373 -9.40529 -9.21502 -8.15221 -6.32322 -0.24327 0.03968 0.61675 1.42067 1.44698 1.52037 1.69463 1.84065 2.23752 2.45542 2.68480 3.12883 3.52383 3.85127 3.99197 4.16177 4.32082 4.38839 4.52999 4.65175 4.74879 4.82299 4.86771 4.98143 5.01685 5.13332 5.23533 5.28678 5.43606 5.57046 5.63784 5.73806 5.99722 6.13124 6.71193 6.74356 7.22454 7.41435 8.89262 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.004539 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.666473 B = 6167.140635 C = 6485.531099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.589 5.589 13 C 0.074 3.926 14 C 0.535 3.465 15 O -0.603 6.603 16 C -0.143 4.143 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.044 4.044 20 C -0.124 4.124 21 S -0.126 6.126 22 C -0.040 4.040 23 H 0.019 0.981 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.083 0.917 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -11.380 -16.448 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.026 0.974 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.318 5.318 13 C -0.067 4.067 14 C 0.324 3.676 15 O -0.487 6.487 16 C -0.148 4.148 17 C -0.084 4.084 18 C -0.135 4.135 19 C -0.065 4.065 20 C -0.236 4.236 21 S 0.031 5.969 22 C -0.062 4.062 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.196 0.804 32 H 0.188 0.812 33 H 0.047 0.953 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.058 -10.278 -16.998 20.274 hybrid contribution 1.047 0.371 2.184 2.451 sum 5.105 -9.907 -14.814 18.538 Atomic orbital electron populations 1.21891 0.96853 1.00385 1.00039 1.18611 0.91798 0.92216 0.81550 0.97438 1.21521 1.32128 1.13198 0.90932 0.91834 1.25764 0.95012 0.95621 1.02098 1.70021 1.37236 1.23862 1.24558 0.85474 0.78329 0.79072 0.77932 1.20346 1.21008 1.18394 1.48161 1.48027 1.13539 1.22058 1.22209 1.02008 0.80277 1.02223 1.19021 0.78664 0.85537 0.84379 1.90701 1.57938 1.21162 1.78875 1.19887 1.06376 0.96175 0.92381 1.22047 0.93481 0.91764 1.01153 1.21590 0.99235 1.02202 0.90446 1.22152 0.92771 0.91434 1.00110 1.21219 1.09584 0.97842 0.94973 1.85941 1.20788 1.66966 1.23214 1.21560 0.94390 0.99429 0.90810 0.96204 0.92999 0.91166 0.92601 0.91348 0.88761 0.90893 0.83085 0.80365 0.81228 0.95273 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.94 71.98 0.64 -5.84 16 2 C 0.26 13.77 2.63 44.25 0.12 13.88 16 3 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 4 C -0.54 -29.32 8.37 25.60 0.21 -29.10 16 5 H 0.06 3.30 7.60 -2.91 -0.02 3.28 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 8 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 12 N -0.59 -25.54 2.75 -830.20 -2.29 -27.82 16 13 C 0.07 2.32 8.14 127.77 1.04 3.36 16 14 C 0.53 23.62 7.35 86.79 0.64 24.26 16 15 O -0.60 -32.83 16.26 -3.87 -0.06 -32.90 16 16 C -0.14 -4.64 5.22 -20.11 -0.10 -4.75 16 17 C -0.07 -1.52 7.46 22.55 0.17 -1.35 16 18 C -0.12 -1.78 10.02 22.21 0.22 -1.56 16 19 C -0.04 -0.73 9.78 22.46 0.22 -0.51 16 20 C -0.12 -2.86 6.11 22.58 0.14 -2.72 16 21 S -0.13 -2.60 25.77 -56.49 -1.46 -4.06 16 22 C -0.04 -1.22 9.38 22.68 0.21 -1.00 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 2.26 6.67 -2.39 -0.02 2.24 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.07 1.92 7.23 -2.38 -0.02 1.90 16 28 H 0.09 2.30 5.37 -2.39 -0.01 2.29 16 29 H 0.07 2.28 6.43 -2.39 -0.02 2.26 16 30 H 0.15 3.18 5.56 -2.91 -0.02 3.17 16 31 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 32 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.08 1.58 9.07 73.35 0.67 2.25 16 34 H 0.12 3.98 8.06 -2.90 -0.02 3.96 16 Total: -1.00 -71.35 297.19 4.22 -67.13 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.80 Total: 9.87 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 3.96 Total: -4.10 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.04 Total: -80.72 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.06 Total: -32.90 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -1.46 Total: -4.06 kcal Total: -71.35 4.22 -67.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235104625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.425 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds