Wall clock time and date at job start Mon Mar 30 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47328 * 240.00109 * 2 1 3 5 5 H 1.07995 * 120.00090 * 245.42953 * 4 2 1 6 6 C 1.37875 * 120.00033 * 65.42841 * 4 2 1 7 7 N 1.31519 * 120.00088 * 8.92391 * 6 4 2 8 8 Si 1.86793 * 120.00170 * 188.92521 * 6 4 2 9 9 H 1.48503 * 109.47230 * 94.99046 * 8 6 4 10 10 H 1.48502 * 109.47561 * 214.98859 * 8 6 4 11 11 H 1.48500 * 109.47212 * 334.98969 * 8 6 4 12 12 N 1.46500 * 109.47006 * 119.99976 * 2 1 3 13 13 C 1.46501 * 120.00221 * 60.00484 * 12 2 1 14 14 C 1.34779 * 119.99740 * 240.00233 * 12 2 1 15 15 O 1.21604 * 120.00507 * 354.87142 * 14 12 2 16 16 C 1.47477 * 119.99903 * 175.15210 * 14 12 2 17 17 C 1.39838 * 120.06278 * 335.22472 * 16 14 12 18 18 C 1.37086 * 119.93528 * 179.76251 * 17 16 14 19 19 C 1.39311 * 120.06318 * 0.51401 * 18 17 16 20 20 S 1.76199 * 119.93559 * 179.71405 * 19 18 17 21 21 C 1.39301 * 120.12421 * 359.74063 * 19 18 17 22 22 C 1.37084 * 120.06874 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.46545 * 183.29894 * 1 2 3 24 24 H 1.09001 * 109.47359 * 303.29316 * 1 2 3 25 25 H 1.08997 * 109.47074 * 63.29965 * 1 2 3 26 26 H 0.97001 * 120.00562 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.46632 * 275.52269 * 13 12 2 28 28 H 1.09002 * 109.46976 * 35.52227 * 13 12 2 29 29 H 1.09002 * 109.47136 * 155.52433 * 13 12 2 30 30 H 1.08003 * 120.03343 * 0.02723 * 17 16 14 31 31 H 1.07999 * 119.97236 * 180.23025 * 18 17 16 32 32 H 1.34502 * 103.00253 * 270.02659 * 20 19 18 33 33 H 1.07999 * 119.96133 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.03469 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5790 -1.6367 -1.1338 6 6 1.7941 -0.1777 -2.4796 7 7 1.2865 1.0303 -2.5935 8 14 2.1921 -1.1715 -4.0103 9 1 0.9720 -1.8822 -4.4702 10 1 2.6680 -0.2606 -5.0822 11 1 3.2528 -2.1620 -3.6954 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.1640 1.0980 1.8463 16 6 3.1963 -0.6958 3.3389 17 6 2.4170 -1.7289 3.8688 18 6 2.7968 -2.3441 5.0334 19 6 3.9523 -1.9338 5.6948 20 16 4.4333 -2.7218 7.1955 21 6 4.7277 -0.9013 5.1721 22 6 4.3559 -0.2864 4.0047 23 1 -0.3632 -1.0260 0.0591 24 1 -0.3634 0.5641 0.8590 25 1 -0.3633 0.4617 -0.9181 26 1 1.1192 1.4053 -3.4723 27 1 0.6897 -2.1466 1.9127 28 1 1.6257 -2.6205 0.4748 29 1 2.4148 -2.5561 2.0690 30 1 1.5189 -2.0447 3.3586 31 1 2.1973 -3.1446 5.4412 32 1 3.8150 -1.9852 8.1358 33 1 5.6227 -0.5851 5.6872 34 1 4.9573 0.5143 3.6002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235412238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:02 Heat of formation + Delta-G solvation = 13.229706 kcal Electronic energy + Delta-G solvation = -17673.768034 eV Core-core repulsion = 14891.869293 eV Total energy + Delta-G solvation = -2781.898742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09857 -38.00938 -35.51742 -33.15101 -31.37373 -31.16477 -29.15453 -26.56563 -25.24824 -24.00044 -22.66822 -21.12370 -19.02929 -18.25503 -16.97214 -16.37550 -16.18182 -15.56972 -15.09356 -14.69401 -14.24310 -14.20648 -13.60334 -13.28218 -13.06660 -12.59745 -12.52899 -12.18099 -11.78559 -11.52927 -11.12664 -11.04132 -10.92360 -10.78235 -10.71969 -10.34491 -10.21210 -9.30926 -9.16559 -9.09350 -8.82411 -8.44548 -8.40752 -7.70266 -6.12280 -4.17581 0.53903 1.29620 1.46226 2.53271 3.18768 3.24873 3.32707 3.34931 3.74980 3.98449 4.37370 4.69597 4.82476 4.92975 5.20344 5.23039 5.33512 5.48849 5.67042 5.82553 5.90884 6.08503 6.13761 6.28625 6.32688 6.61528 6.66420 6.71361 6.91880 7.26586 7.47254 7.63066 7.87454 8.10834 8.40791 8.77843 8.93681 9.47578 10.95207 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037967 B = 0.004285 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.303169 B = 6532.603858 C = 6628.203989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.255 3.745 3 H 0.071 0.929 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.581 5.581 13 C 0.067 3.933 14 C 0.539 3.461 15 O -0.542 6.542 16 C -0.090 4.090 17 C -0.113 4.113 18 C -0.083 4.083 19 C -0.098 4.098 20 S -0.135 6.135 21 C -0.082 4.082 22 C -0.074 4.074 23 H 0.032 0.968 24 H 0.016 0.984 25 H 0.078 0.922 26 H 0.264 0.736 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -7.817 15.199 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.089 0.911 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.311 5.311 13 C -0.076 4.076 14 C 0.325 3.675 15 O -0.421 6.421 16 C -0.093 4.093 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.211 4.211 20 S 0.022 5.978 21 C -0.102 4.102 22 C -0.094 4.094 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.040 0.960 33 H 0.154 0.846 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.496 -7.645 15.557 17.513 hybrid contribution -0.667 0.475 -1.083 1.358 sum 1.829 -7.169 14.474 16.256 Atomic orbital electron populations 1.22023 0.98350 0.98974 1.00602 1.19019 0.90479 0.95136 0.79865 0.91085 1.21264 1.36618 1.08687 0.90306 0.92085 1.24898 0.95054 0.94631 0.98994 1.69969 1.44038 1.14013 1.24118 0.86520 0.78534 0.80009 0.82596 1.20580 1.21131 1.19840 1.48156 1.48210 1.11398 1.23384 1.22215 0.98761 0.83706 1.02911 1.18173 0.79756 0.86260 0.83263 1.90766 1.55200 1.18739 1.77392 1.20553 0.96109 0.96413 0.96218 1.22112 1.00992 0.94695 0.95447 1.21397 0.95071 0.99150 0.94711 1.21445 0.99614 1.01391 0.98609 1.85975 1.68086 1.43657 1.00129 1.21384 0.99009 0.94126 0.95720 1.21208 0.95540 0.98819 0.93868 0.94839 0.96507 0.90327 0.92634 0.93164 0.90130 0.91148 0.82764 0.84575 0.96012 0.84564 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.12 37.16 0.34 -2.89 16 2 C 0.25 6.39 2.50 -69.08 -0.17 6.22 16 3 H 0.07 2.09 6.86 -51.93 -0.36 1.74 16 4 C -0.53 -14.12 8.06 -34.44 -0.28 -14.40 16 5 H 0.06 1.60 7.07 -52.49 -0.37 1.23 16 6 C 0.07 1.82 5.18 -17.82 -0.09 1.73 16 7 N -0.88 -25.03 12.13 55.43 0.67 -24.36 16 8 Si 0.90 20.76 29.55 -169.99 -5.02 15.74 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.58 -12.18 2.75 -176.51 -0.49 -12.66 16 13 C 0.07 1.07 7.66 59.85 0.46 1.53 16 14 C 0.54 11.27 7.48 -12.49 -0.09 11.17 16 15 O -0.54 -13.49 15.93 5.27 0.08 -13.40 16 16 C -0.09 -1.44 5.50 -104.94 -0.58 -2.02 16 17 C -0.11 -1.46 7.49 -39.40 -0.30 -1.75 16 18 C -0.08 -0.93 9.75 -39.60 -0.39 -1.31 16 19 C -0.10 -1.14 6.13 -38.79 -0.24 -1.38 16 20 S -0.14 -1.36 25.77 -107.50 -2.77 -4.13 16 21 C -0.08 -0.98 9.75 -39.61 -0.39 -1.36 16 22 C -0.07 -1.06 9.56 -39.40 -0.38 -1.44 16 23 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 1.97 6.81 -51.93 -0.35 1.62 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 0.68 7.12 -51.93 -0.37 0.31 16 28 H 0.08 1.36 6.86 -51.93 -0.36 1.01 16 29 H 0.07 0.96 5.11 -51.93 -0.27 0.70 16 30 H 0.16 1.81 4.41 -52.48 -0.23 1.58 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.69 9.07 97.61 0.89 1.57 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.14 2.03 7.83 -52.49 -0.41 1.62 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -30.54 296.90 -7.77 -38.31 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -2.63 Total: 1.92 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.10 Total: -5.90 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.19 Total: -37.02 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.77 Total: -4.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.54 -7.77 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235412238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.540 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds