Wall clock time and date at job start Mon Mar 30 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47328 * 240.00109 * 2 1 3 5 5 H 1.07995 * 120.00090 * 245.42953 * 4 2 1 6 6 C 1.37875 * 120.00033 * 65.42841 * 4 2 1 7 7 N 1.31519 * 120.00088 * 8.92391 * 6 4 2 8 8 Si 1.86793 * 120.00170 * 188.92521 * 6 4 2 9 9 H 1.48503 * 109.47230 * 94.99046 * 8 6 4 10 10 H 1.48502 * 109.47561 * 214.98859 * 8 6 4 11 11 H 1.48500 * 109.47212 * 334.98969 * 8 6 4 12 12 N 1.46500 * 109.47006 * 119.99976 * 2 1 3 13 13 C 1.46501 * 120.00221 * 60.00484 * 12 2 1 14 14 C 1.34779 * 119.99740 * 240.00233 * 12 2 1 15 15 O 1.21604 * 120.00507 * 354.87142 * 14 12 2 16 16 C 1.47477 * 119.99903 * 175.15210 * 14 12 2 17 17 C 1.39838 * 120.06278 * 335.22472 * 16 14 12 18 18 C 1.37086 * 119.93528 * 179.76251 * 17 16 14 19 19 C 1.39311 * 120.06318 * 0.51401 * 18 17 16 20 20 S 1.76199 * 119.93559 * 179.71405 * 19 18 17 21 21 C 1.39301 * 120.12421 * 359.74063 * 19 18 17 22 22 C 1.37084 * 120.06874 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.46545 * 183.29894 * 1 2 3 24 24 H 1.09001 * 109.47359 * 303.29316 * 1 2 3 25 25 H 1.08997 * 109.47074 * 63.29965 * 1 2 3 26 26 H 0.97001 * 120.00562 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.46632 * 275.52269 * 13 12 2 28 28 H 1.09002 * 109.46976 * 35.52227 * 13 12 2 29 29 H 1.09002 * 109.47136 * 155.52433 * 13 12 2 30 30 H 1.08003 * 120.03343 * 0.02723 * 17 16 14 31 31 H 1.07999 * 119.97236 * 180.23025 * 18 17 16 32 32 H 1.34502 * 103.00253 * 270.02659 * 20 19 18 33 33 H 1.07999 * 119.96133 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.03469 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5790 -1.6367 -1.1338 6 6 1.7941 -0.1777 -2.4796 7 7 1.2865 1.0303 -2.5935 8 14 2.1921 -1.1715 -4.0103 9 1 0.9720 -1.8822 -4.4702 10 1 2.6680 -0.2606 -5.0822 11 1 3.2528 -2.1620 -3.6954 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.1640 1.0980 1.8463 16 6 3.1963 -0.6958 3.3389 17 6 2.4170 -1.7289 3.8688 18 6 2.7968 -2.3441 5.0334 19 6 3.9523 -1.9338 5.6948 20 16 4.4333 -2.7218 7.1955 21 6 4.7277 -0.9013 5.1721 22 6 4.3559 -0.2864 4.0047 23 1 -0.3632 -1.0260 0.0591 24 1 -0.3634 0.5641 0.8590 25 1 -0.3633 0.4617 -0.9181 26 1 1.1192 1.4053 -3.4723 27 1 0.6897 -2.1466 1.9127 28 1 1.6257 -2.6205 0.4748 29 1 2.4148 -2.5561 2.0690 30 1 1.5189 -2.0447 3.3586 31 1 2.1973 -3.1446 5.4412 32 1 3.8150 -1.9852 8.1358 33 1 5.6227 -0.5851 5.6872 34 1 4.9573 0.5143 3.6002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235412238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:02 Heat of formation + Delta-G solvation = -5.315097 kcal Electronic energy + Delta-G solvation = -17674.572197 eV Core-core repulsion = 14891.869293 eV Total energy + Delta-G solvation = -2782.702905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.45667 -39.32065 -37.26866 -34.98095 -32.81108 -32.20474 -30.79148 -27.97560 -27.28642 -25.32556 -23.69196 -22.70921 -20.55591 -19.16670 -18.61268 -18.07231 -17.56505 -16.85325 -16.50213 -16.22430 -15.65787 -15.47448 -14.77782 -14.67862 -14.41686 -14.12920 -13.94207 -13.65410 -13.41200 -12.93009 -12.88452 -12.64979 -12.63635 -12.30111 -12.11153 -11.92437 -11.80038 -11.25063 -10.80429 -10.52092 -10.08667 -9.91591 -9.39350 -9.17087 -8.18057 -6.31678 -0.51061 0.32283 0.59920 1.41823 1.42655 1.53181 1.61151 1.96731 2.24388 2.45481 2.73577 3.11603 3.56929 3.75998 3.89698 4.23288 4.32853 4.38334 4.56179 4.62916 4.71948 4.84651 4.93386 4.97689 5.01320 5.08016 5.16768 5.27539 5.45116 5.52747 5.64144 5.69324 5.95820 6.10654 6.71303 6.76408 7.23612 7.41262 8.89106 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037967 B = 0.004285 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.303169 B = 6532.603858 C = 6628.203989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.257 3.743 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.588 5.588 13 C 0.062 3.938 14 C 0.530 3.470 15 O -0.601 6.601 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.072 4.072 19 C -0.097 4.097 20 S -0.121 6.121 21 C -0.077 4.077 22 C -0.085 4.085 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.265 0.735 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -10.903 17.067 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.155 3.845 3 H 0.031 0.969 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.192 1.192 12 N -0.317 5.317 13 C -0.079 4.079 14 C 0.320 3.680 15 O -0.484 6.484 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.093 4.093 19 C -0.209 4.209 20 S 0.036 5.964 21 C -0.097 4.097 22 C -0.106 4.106 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.187 0.813 31 H 0.188 0.812 32 H 0.052 0.948 33 H 0.176 0.824 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.279 -10.782 17.449 20.638 hybrid contribution -0.549 1.421 -1.503 2.140 sum 1.730 -9.361 15.946 18.572 Atomic orbital electron populations 1.21805 0.96657 1.00367 0.99629 1.18634 0.91715 0.92616 0.81504 0.96902 1.21554 1.36536 1.08683 0.91173 0.91868 1.25757 0.94959 0.95469 1.02168 1.70114 1.45252 1.15627 1.24776 0.85456 0.78776 0.78421 0.78452 1.19172 1.21440 1.19193 1.48139 1.48139 1.13270 1.22142 1.22537 1.01348 0.80609 1.03397 1.18968 0.78700 0.85757 0.84615 1.90718 1.57326 1.21388 1.78970 1.20212 0.98135 0.98601 0.94875 1.22195 1.00780 0.93459 0.95984 1.21749 0.94886 0.99109 0.93516 1.21734 0.99235 1.00560 0.99388 1.86003 1.68177 1.43080 0.99138 1.21576 0.99732 0.93835 0.94591 1.21185 0.95347 0.99093 0.94943 0.92263 0.95561 0.92960 0.92638 0.89881 0.91051 0.88472 0.81324 0.81211 0.94798 0.82361 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 9.12 71.98 0.66 -5.19 16 2 C 0.26 13.39 2.50 44.24 0.11 13.50 16 3 H 0.01 0.82 6.86 -2.39 -0.02 0.80 16 4 C -0.54 -29.41 8.06 25.60 0.21 -29.20 16 5 H 0.06 3.32 7.07 -2.91 -0.02 3.30 16 6 C 0.02 0.90 5.18 84.65 0.44 1.34 16 7 N -0.92 -53.89 12.13 21.45 0.26 -53.63 16 8 Si 0.96 42.91 29.55 68.60 2.03 44.94 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 N -0.59 -24.98 2.75 -830.62 -2.29 -27.27 16 13 C 0.06 1.87 7.66 127.77 0.98 2.85 16 14 C 0.53 23.03 7.48 86.68 0.65 23.68 16 15 O -0.60 -32.15 15.93 -4.04 -0.06 -32.22 16 16 C -0.12 -3.67 5.50 -20.07 -0.11 -3.78 16 17 C -0.10 -2.42 7.49 22.39 0.17 -2.25 16 18 C -0.07 -1.33 9.75 22.26 0.22 -1.11 16 19 C -0.10 -1.90 6.13 22.78 0.14 -1.76 16 20 S -0.12 -1.94 25.77 -56.49 -1.46 -3.40 16 21 C -0.08 -1.68 9.75 22.25 0.22 -1.46 16 22 C -0.08 -2.44 9.56 22.39 0.21 -2.23 16 23 H 0.06 2.38 7.56 -2.39 -0.02 2.36 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 2.69 6.81 -2.39 -0.02 2.67 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.08 1.96 7.12 -2.39 -0.02 1.94 16 28 H 0.07 2.29 6.86 -2.39 -0.02 2.27 16 29 H 0.10 2.39 5.11 -2.39 -0.01 2.38 16 30 H 0.17 3.34 4.41 -2.91 -0.01 3.32 16 31 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.09 1.24 9.07 73.35 0.67 1.90 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.13 3.87 7.83 -2.91 -0.02 3.85 16 Total: -1.00 -70.46 296.90 4.16 -66.30 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.80 Total: 10.91 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 3.88 Total: -5.63 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.03 Total: -80.90 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.06 Total: -32.22 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -1.46 Total: -3.40 kcal Total: -70.46 4.16 -66.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235412238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.984 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds