Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76199 * 103.00237 * 2 1 4 4 C 1.38976 * 120.08033 * 180.02562 * 3 2 1 5 5 C 1.38084 * 119.91768 * 180.02562 * 4 3 2 6 6 C 1.38303 * 120.07949 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.91898 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.99789 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.50703 * 109.47064 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00280 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99788 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46828 * 90.00241 * 16 14 12 18 18 H 1.48495 * 109.46968 * 209.99597 * 16 14 12 19 19 H 1.48499 * 109.47437 * 330.00066 * 16 14 12 20 20 C 1.38306 * 120.16298 * 0.27001 * 6 5 4 21 21 C 1.38081 * 120.07527 * 359.45461 * 20 6 5 22 22 H 1.09001 * 109.46736 * 300.00348 * 1 2 3 23 23 H 1.09000 * 109.46866 * 60.00152 * 1 2 3 24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.03993 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.96071 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47152 * 329.99872 * 7 6 5 28 28 H 1.09001 * 109.46980 * 209.99972 * 7 6 5 29 29 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 30 30 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 31 31 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 32 32 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 33 33 H 1.07997 * 119.95930 * 179.72699 * 20 6 5 34 34 H 1.08004 * 120.03893 * 180.26968 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1249 -0.0005 5 6 3.8458 3.4713 0.0000 6 6 2.8330 4.4131 0.0016 7 6 3.1720 5.8815 0.0028 8 7 3.2809 6.3586 -1.3781 9 6 3.5783 7.6500 -1.6233 10 8 3.7562 8.4171 -0.7009 11 6 3.6909 8.1407 -3.0437 12 6 4.0298 9.6091 -3.0426 13 1 4.1519 10.1344 -2.1069 14 6 4.1841 10.2819 -4.2361 15 7 4.0349 9.6424 -5.3756 16 14 4.6034 12.1023 -4.2347 17 1 6.0789 12.2703 -4.2352 18 1 4.0319 12.7428 -5.4463 19 1 4.0330 12.7408 -3.0214 20 6 1.5098 4.0106 0.0083 21 6 1.1954 2.6661 0.0021 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 4.3303 1.3900 -0.0005 26 1 4.8779 3.7892 0.0000 27 1 4.1212 6.0348 0.5161 28 1 2.3869 6.4352 0.5177 29 1 3.1383 5.7452 -2.1158 30 1 4.4766 7.5872 -3.5581 31 1 2.7420 7.9868 -3.5576 32 1 4.1438 10.1157 -6.2152 33 1 0.7215 4.7488 0.0140 34 1 0.1619 2.3525 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258667017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -24.773447 kcal Electronic energy + Delta-G solvation = -16562.769300 eV Core-core repulsion = 13779.222618 eV Total energy + Delta-G solvation = -2783.546682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60862 -38.37204 -34.48222 -32.90762 -31.57044 -31.27723 -29.30048 -28.86869 -26.04898 -23.34300 -22.84065 -21.52064 -19.66432 -18.00850 -16.54165 -16.35233 -15.75516 -15.40062 -15.09578 -14.88013 -14.35611 -14.26882 -14.19393 -13.92813 -13.47746 -13.01813 -12.79284 -12.56767 -12.41584 -12.07187 -11.56778 -11.31210 -11.10079 -10.76942 -10.59201 -10.53787 -9.96791 -9.93215 -9.25863 -9.18994 -8.66166 -8.50019 -8.39448 -7.65374 -6.04532 -4.04039 0.91228 1.17354 1.21096 2.07832 3.35795 3.37415 3.41083 3.48651 3.72628 4.14852 4.51374 4.58687 4.65290 4.67200 4.70736 4.71692 5.15930 5.20737 5.27172 5.33717 5.48907 5.60028 5.82966 5.87189 6.02332 6.08864 6.37436 6.47365 6.67819 7.02315 7.20433 7.34442 7.97138 8.06935 8.44970 9.06976 9.23507 9.61022 11.07884 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045510 B = 0.003055 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.105652 B = 9163.631167 C = 9348.391444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.124 6.124 3 C -0.083 4.083 4 C -0.101 4.101 5 C -0.083 4.083 6 C -0.100 4.100 7 C 0.160 3.840 8 N -0.745 5.745 9 C 0.514 3.486 10 O -0.546 6.546 11 C 0.005 3.995 12 C -0.508 4.508 13 H 0.075 0.925 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.082 4.082 21 C -0.135 4.135 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.397 0.603 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.261 0.739 33 H 0.129 0.871 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -20.479 10.024 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.118 5.882 3 C -0.196 4.196 4 C -0.125 4.125 5 C -0.103 4.103 6 C -0.102 4.102 7 C 0.036 3.964 8 N -0.400 5.400 9 C 0.305 3.695 10 O -0.422 6.422 11 C -0.034 4.034 12 C -0.546 4.546 13 H 0.093 0.907 14 C -0.147 4.147 15 N -0.541 5.541 16 Si 0.729 3.271 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.102 4.102 21 C -0.159 4.159 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.126 0.874 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.147 0.853 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.796 -20.925 10.518 24.126 hybrid contribution -0.745 1.619 -0.497 1.850 sum -6.541 -19.306 10.021 22.714 Atomic orbital electron populations 1.23671 0.94697 1.07067 1.05810 1.85472 1.06544 1.03497 1.92706 1.21724 0.96801 0.96225 1.04825 1.20743 0.94182 0.96104 1.01422 1.21087 0.99561 0.91913 0.97718 1.20080 0.93367 0.95608 1.01191 1.20063 1.01908 0.88588 0.85850 1.46397 1.75098 1.11755 1.06755 1.22045 0.73456 0.79780 0.94265 1.90537 1.49346 1.55025 1.47315 1.19240 0.99413 0.98196 0.86534 1.21175 1.47009 0.93048 0.93394 0.90683 1.25013 0.95433 0.98832 0.95377 1.69959 1.50377 1.36483 0.97285 0.86429 0.78566 0.84651 0.77451 1.20603 1.21280 1.19670 1.21035 0.96188 0.95265 0.97740 1.21131 0.98129 0.93071 1.03534 0.89702 0.89603 0.87441 0.85388 0.85061 0.91191 0.91270 0.76960 0.93450 0.93467 0.92915 0.85326 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.15 101.05 0.92 0.08 16 2 S -0.12 -1.11 22.56 -107.50 -2.43 -3.54 16 3 C -0.08 -0.87 6.11 -39.04 -0.24 -1.11 16 4 C -0.10 -1.07 9.79 -39.36 -0.39 -1.46 16 5 C -0.08 -0.92 9.69 -39.61 -0.38 -1.30 16 6 C -0.10 -1.20 5.25 -104.57 -0.55 -1.74 16 7 C 0.16 2.33 5.80 -5.19 -0.03 2.30 16 8 N -0.75 -12.79 5.55 -61.47 -0.34 -13.14 16 9 C 0.51 11.72 7.82 -10.99 -0.09 11.63 16 10 O -0.55 -14.27 15.46 5.56 0.09 -14.18 16 11 C 0.01 0.14 5.46 -29.03 -0.16 -0.02 16 12 C -0.51 -14.85 8.92 -34.44 -0.31 -15.15 16 13 H 0.08 2.29 6.75 -52.49 -0.35 1.93 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 16 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.08 -0.90 9.69 -39.61 -0.38 -1.28 16 21 C -0.14 -1.36 9.36 -39.37 -0.37 -1.73 16 22 H 0.08 0.44 7.74 -51.92 -0.40 0.04 16 23 H 0.09 0.47 7.75 -51.92 -0.40 0.07 16 24 H 0.11 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 28 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.40 6.01 8.46 -40.82 -0.35 5.66 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 0.98 5.88 -52.48 -0.31 0.68 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -32.95 309.90 -8.68 -41.64 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.32 Total: 1.49 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.06 Total: -8.32 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.40 Total: -38.99 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.43 Total: -3.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.95 -8.68 -41.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.865 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds