Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76199 * 103.00237 * 2 1 4 4 C 1.38976 * 120.08033 * 180.02562 * 3 2 1 5 5 C 1.38084 * 119.91768 * 180.02562 * 4 3 2 6 6 C 1.38303 * 120.07949 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.91898 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.99789 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.50703 * 109.47064 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00280 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99788 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46828 * 90.00241 * 16 14 12 18 18 H 1.48495 * 109.46968 * 209.99597 * 16 14 12 19 19 H 1.48499 * 109.47437 * 330.00066 * 16 14 12 20 20 C 1.38306 * 120.16298 * 0.27001 * 6 5 4 21 21 C 1.38081 * 120.07527 * 359.45461 * 20 6 5 22 22 H 1.09001 * 109.46736 * 300.00348 * 1 2 3 23 23 H 1.09000 * 109.46866 * 60.00152 * 1 2 3 24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.03993 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.96071 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47152 * 329.99872 * 7 6 5 28 28 H 1.09001 * 109.46980 * 209.99972 * 7 6 5 29 29 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 30 30 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 31 31 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 32 32 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 33 33 H 1.07997 * 119.95930 * 179.72699 * 20 6 5 34 34 H 1.08004 * 120.03893 * 180.26968 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1249 -0.0005 5 6 3.8458 3.4713 0.0000 6 6 2.8330 4.4131 0.0016 7 6 3.1720 5.8815 0.0028 8 7 3.2809 6.3586 -1.3781 9 6 3.5783 7.6500 -1.6233 10 8 3.7562 8.4171 -0.7009 11 6 3.6909 8.1407 -3.0437 12 6 4.0298 9.6091 -3.0426 13 1 4.1519 10.1344 -2.1069 14 6 4.1841 10.2819 -4.2361 15 7 4.0349 9.6424 -5.3756 16 14 4.6034 12.1023 -4.2347 17 1 6.0789 12.2703 -4.2352 18 1 4.0319 12.7428 -5.4463 19 1 4.0330 12.7408 -3.0214 20 6 1.5098 4.0106 0.0083 21 6 1.1954 2.6661 0.0021 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 4.3303 1.3900 -0.0005 26 1 4.8779 3.7892 0.0000 27 1 4.1212 6.0348 0.5161 28 1 2.3869 6.4352 0.5177 29 1 3.1383 5.7452 -2.1158 30 1 4.4766 7.5872 -3.5581 31 1 2.7420 7.9868 -3.5576 32 1 4.1438 10.1157 -6.2152 33 1 0.7215 4.7488 0.0140 34 1 0.1619 2.3525 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258667017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -45.235155 kcal Electronic energy + Delta-G solvation = -16563.656586 eV Core-core repulsion = 13779.222618 eV Total energy + Delta-G solvation = -2784.433968 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76019 -39.86307 -35.90677 -35.08622 -32.68405 -32.17504 -30.89596 -29.72002 -27.40362 -25.27095 -23.64922 -22.51928 -21.39346 -18.79676 -18.52658 -17.91922 -16.90810 -16.75913 -16.57582 -16.04433 -15.86974 -15.61347 -14.75285 -14.73876 -14.51272 -14.30849 -14.10044 -13.95512 -13.69516 -13.29242 -13.08496 -12.80311 -12.56227 -12.41429 -12.11675 -12.03149 -11.44915 -11.21710 -10.91905 -10.62666 -10.40439 -10.03955 -9.97335 -8.39773 -8.24811 -6.32346 0.04049 0.35740 0.55895 1.40751 1.41598 1.45939 1.54334 1.88757 2.29365 2.45684 2.87127 3.10375 3.66585 3.77929 3.94810 4.24721 4.26495 4.29983 4.34695 4.39664 4.61560 4.67567 4.80746 4.87174 5.02616 5.08600 5.20583 5.24931 5.26599 5.52584 5.57354 5.73972 5.84769 6.05892 6.69927 6.84054 7.33809 7.50439 8.87245 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045510 B = 0.003055 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.105652 B = 9163.631167 C = 9348.391444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.144 6.144 3 C -0.087 4.087 4 C -0.110 4.110 5 C -0.085 4.085 6 C -0.112 4.112 7 C 0.164 3.836 8 N -0.722 5.722 9 C 0.519 3.481 10 O -0.584 6.584 11 C 0.008 3.992 12 C -0.537 4.537 13 H 0.056 0.944 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.965 3.035 17 H -0.271 1.271 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.085 4.085 21 C -0.136 4.136 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.409 0.591 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.267 0.733 33 H 0.137 0.863 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -21.530 10.183 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.098 5.902 3 C -0.200 4.200 4 C -0.133 4.133 5 C -0.105 4.105 6 C -0.115 4.115 7 C 0.041 3.959 8 N -0.375 5.375 9 C 0.309 3.691 10 O -0.464 6.464 11 C -0.032 4.032 12 C -0.575 4.575 13 H 0.074 0.926 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.105 4.105 21 C -0.160 4.160 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.144 0.856 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.245 0.755 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.617 -22.045 10.669 25.369 hybrid contribution -0.557 1.776 -0.535 1.937 sum -7.174 -20.268 10.134 23.769 Atomic orbital electron populations 1.23796 0.91717 1.08565 1.06579 1.85573 1.09885 1.02385 1.92359 1.21973 0.96925 0.97272 1.03787 1.20933 0.94871 0.96070 1.01420 1.21183 0.99741 0.92153 0.97463 1.19826 0.94249 0.93853 1.03529 1.20115 1.01736 0.90438 0.83640 1.46100 1.72723 1.09949 1.08779 1.21448 0.73755 0.81297 0.92626 1.90515 1.51544 1.56563 1.47799 1.19079 0.98725 0.96801 0.88558 1.21387 1.48155 0.95004 0.92986 0.92615 1.25805 0.94956 1.03294 0.94886 1.70031 1.50476 1.38209 0.97796 0.85449 0.78699 0.79239 0.77671 1.19653 1.19856 1.19859 1.21176 0.95891 0.96081 0.97341 1.21372 0.99246 0.92497 1.02883 0.88753 0.88962 0.85613 0.84252 0.84474 0.91548 0.91497 0.75542 0.94045 0.94003 0.92382 0.84503 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.15 113.37 1.04 -0.17 16 2 S -0.14 -2.30 22.56 -56.49 -1.27 -3.58 16 3 C -0.09 -1.66 6.11 22.62 0.14 -1.52 16 4 C -0.11 -2.17 9.79 22.41 0.22 -1.95 16 5 C -0.09 -1.80 9.69 22.25 0.22 -1.59 16 6 C -0.11 -2.56 5.25 -19.83 -0.10 -2.67 16 7 C 0.16 4.70 5.80 85.63 0.50 5.19 16 8 N -0.72 -24.62 5.55 -466.78 -2.59 -27.21 16 9 C 0.52 24.00 7.82 87.66 0.69 24.69 16 10 O -0.58 -31.16 15.46 -3.03 -0.05 -31.21 16 11 C 0.01 0.41 5.46 29.10 0.16 0.57 16 12 C -0.54 -32.00 8.92 25.60 0.23 -31.77 16 13 H 0.06 3.48 6.75 -2.91 -0.02 3.46 16 14 C 0.01 0.53 5.46 84.66 0.46 0.99 16 15 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 16 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 20 C -0.08 -1.72 9.69 22.25 0.22 -1.51 16 21 C -0.14 -2.45 9.36 22.41 0.21 -2.24 16 22 H 0.09 0.69 7.74 -2.39 -0.02 0.67 16 23 H 0.09 0.73 7.75 -2.39 -0.02 0.71 16 24 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 26 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 27 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 28 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 29 H 0.41 12.10 8.46 -92.71 -0.78 11.31 16 30 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.15 1.89 5.88 -2.91 -0.02 1.87 16 Total: -1.00 -70.37 309.90 2.69 -67.69 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.32 Total: 12.94 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 3.96 Total: -11.98 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.30 Total: -81.49 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -1.27 Total: -3.58 kcal Total: -70.37 2.69 -67.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.451 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds