Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99522 * 2 1 4 4 H 1.48495 * 109.46990 * 240.00170 * 3 2 1 5 5 H 1.48501 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46847 * 120.00608 * 3 2 1 7 7 C 1.37871 * 120.00476 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.53115 * 109.52392 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.27856 * 182.37644 * 10 9 7 12 12 N 1.46848 * 109.52512 * 59.18070 * 11 10 9 13 13 C 1.39745 * 110.99963 * 174.16056 * 12 11 10 14 14 C 1.38893 * 120.06409 * 359.72983 * 13 12 11 15 15 C 1.38109 * 119.93684 * 179.72391 * 14 13 12 16 16 C 1.38375 * 120.06014 * 0.54513 * 15 14 13 17 17 Cl 1.73609 * 119.93786 * 179.70251 * 16 15 14 18 18 C 1.38384 * 120.12649 * 359.72817 * 16 15 14 19 19 C 1.38109 * 120.06016 * 359.97438 * 18 16 15 20 20 C 1.46850 * 111.19790 * 298.25813 * 12 11 10 21 21 C 1.53042 * 109.52103 * 61.74104 * 20 12 11 22 22 H 0.96999 * 120.00452 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.52340 * 300.12600 * 9 7 2 24 24 H 1.09003 * 109.50689 * 62.43895 * 10 9 7 25 25 H 1.09001 * 109.54039 * 302.33523 * 10 9 7 26 26 H 1.09002 * 109.46536 * 299.16137 * 11 10 9 27 27 H 1.09001 * 109.45860 * 179.19526 * 11 10 9 28 28 H 1.08001 * 120.03085 * 359.97087 * 14 13 12 29 29 H 1.08003 * 119.96558 * 180.25403 * 15 14 13 30 30 H 1.07996 * 119.96742 * 179.97438 * 18 16 15 31 31 H 1.07996 * 120.03266 * 179.97438 * 19 18 16 32 32 H 1.08992 * 109.46462 * 181.75507 * 20 12 11 33 33 H 1.09000 * 109.46104 * 301.73072 * 20 12 11 34 34 H 1.08996 * 109.50008 * 180.88005 * 21 20 12 35 35 H 1.08995 * 109.53279 * 60.78118 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2452 -3.6637 -0.0018 11 6 1.4754 -4.9850 -0.0617 12 7 0.6526 -5.0190 -1.2776 13 6 0.0377 -6.2644 -1.4315 14 6 0.2544 -7.2678 -0.4959 15 6 -0.3591 -8.4958 -0.6476 16 6 -1.1801 -8.7307 -1.7365 17 17 -1.9436 -10.2780 -1.9281 18 6 -1.3933 -7.7346 -2.6732 19 6 -0.7872 -6.5027 -2.5233 20 6 -0.3412 -3.9379 -1.2766 21 6 0.3744 -2.5853 -1.2529 22 1 -0.4851 0.8400 0.0004 23 1 0.6229 -2.5570 0.8883 24 1 2.8438 -3.6324 0.9086 25 1 2.8992 -3.5839 -0.8702 26 1 0.8325 -5.0709 0.8144 27 1 2.1808 -5.8159 -0.0772 28 1 0.8989 -7.0866 0.3515 29 1 -0.1942 -9.2750 0.0818 30 1 -2.0342 -7.9209 -3.5223 31 1 -0.9536 -5.7259 -3.2548 32 1 -0.9553 -4.0082 -2.1743 33 1 -0.9755 -4.0286 -0.3948 34 1 -0.3636 -1.7834 -1.2364 35 1 0.9983 -2.4876 -2.1414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259171301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = 13.971399 kcal Electronic energy + Delta-G solvation = -17577.203722 eV Core-core repulsion = 14793.293436 eV Total energy + Delta-G solvation = -2783.910286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08293 -37.70231 -36.27178 -34.00300 -31.65140 -31.35917 -29.85820 -28.61799 -25.65256 -23.59279 -22.74161 -21.32493 -20.91711 -18.76428 -17.63991 -16.36579 -15.90778 -15.49482 -14.66655 -14.44049 -14.23659 -13.56642 -13.52353 -13.24606 -12.92050 -12.74086 -12.47886 -11.91078 -11.65646 -11.50162 -11.36776 -10.99925 -10.88010 -10.72030 -10.59667 -10.35736 -10.11070 -9.67546 -9.30286 -9.04597 -9.01499 -8.79633 -8.36429 -7.52852 -6.03624 -4.09294 1.27111 1.33944 2.19798 3.29609 3.34519 3.37188 3.63823 4.15635 4.40614 4.80325 4.89503 5.26617 5.30977 5.39881 5.41456 5.61353 5.69142 5.82099 5.94119 6.03337 6.06956 6.15870 6.24180 6.31793 6.40296 6.51701 6.67626 6.70139 6.96265 7.02482 7.32134 7.39900 7.58456 7.70744 7.93407 8.04441 8.39641 8.93864 9.55736 11.02735 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.059592 B = 0.003754 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.745626 B = 7457.423388 C = 7724.695442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.109 4.109 11 C 0.053 3.947 12 N -0.485 5.485 13 C 0.136 3.864 14 C -0.169 4.169 15 C -0.081 4.081 16 C -0.075 4.075 17 Cl -0.088 7.088 18 C -0.083 4.083 19 C -0.137 4.137 20 C 0.060 3.940 21 C -0.108 4.108 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 -15.043 -2.817 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.147 4.147 11 C -0.074 4.074 12 N -0.198 5.198 13 C 0.035 3.965 14 C -0.191 4.191 15 C -0.101 4.101 16 C -0.103 4.103 17 Cl -0.059 7.059 18 C -0.103 4.103 19 C -0.158 4.158 20 C -0.064 4.064 21 C -0.146 4.146 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.572 -14.842 -3.211 15.402 hybrid contribution -0.019 0.608 0.519 0.800 sum -2.591 -14.234 -2.692 14.716 Atomic orbital electron populations 1.69843 1.05884 1.26591 1.50790 1.24964 0.94856 0.99072 0.95043 0.86672 0.79623 0.83175 0.78615 1.20273 1.21328 1.20334 1.21137 0.92893 0.90530 1.50538 0.92695 1.18704 0.92672 0.91858 0.93927 1.21735 0.98821 0.93251 1.00860 1.22375 0.95891 1.00187 0.88905 1.59030 1.22124 1.01156 1.37536 1.19347 0.91975 0.91751 0.93387 1.21325 1.04062 0.93827 0.99860 1.20841 0.95660 0.97234 0.96334 1.20705 1.02490 0.87665 0.99433 1.98335 1.81069 1.29064 1.97462 1.20846 0.99386 0.91886 0.98162 1.20785 0.99552 0.97202 0.98267 1.22483 0.92205 0.91689 0.99989 1.21762 1.00484 0.92597 0.99782 0.92929 0.95870 0.92531 0.92251 0.94126 0.91427 0.84652 0.85388 0.85209 0.84839 0.91665 0.94481 0.88335 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 11.37 55.43 0.63 -24.04 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.11 2.16 -91.65 -0.20 0.92 16 10 C -0.11 -2.16 5.32 -26.65 -0.14 -2.30 16 11 C 0.05 0.89 4.15 -3.83 -0.02 0.88 16 12 N -0.49 -8.36 4.70 -171.13 -0.80 -9.17 16 13 C 0.14 2.07 5.64 -83.76 -0.47 1.59 16 14 C -0.17 -2.31 8.82 -39.39 -0.35 -2.66 16 15 C -0.08 -1.00 9.82 -39.58 -0.39 -1.39 16 16 C -0.08 -0.94 6.32 -39.48 -0.25 -1.19 16 17 Cl -0.09 -0.99 28.95 -51.86 -1.50 -2.49 16 18 C -0.08 -1.03 9.82 -39.58 -0.39 -1.42 16 19 C -0.14 -1.89 9.16 -39.38 -0.36 -2.25 16 20 C 0.06 1.12 5.26 -3.83 -0.02 1.10 16 21 C -0.11 -2.42 5.12 -26.65 -0.14 -2.56 16 22 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 27 H 0.07 1.00 6.97 -51.93 -0.36 0.64 16 28 H 0.14 1.70 5.80 -52.49 -0.30 1.40 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.74 7.15 -52.49 -0.38 1.36 16 32 H 0.06 1.10 6.70 -51.93 -0.35 0.75 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.46 6.17 -51.93 -0.32 2.14 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -26.90 294.78 -9.98 -36.88 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.61 Total: 0.21 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.11 Total: -21.64 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.17 Total: -33.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.90 -9.98 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259171301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.853 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds