Wall clock time and date at job start Mon Mar 30 2020 06:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99522 * 2 1 4 4 H 1.48495 * 109.46990 * 240.00170 * 3 2 1 5 5 H 1.48501 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46847 * 120.00608 * 3 2 1 7 7 C 1.37871 * 120.00476 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.53115 * 109.52392 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.27856 * 182.37644 * 10 9 7 12 12 N 1.46848 * 109.52512 * 59.18070 * 11 10 9 13 13 C 1.39745 * 110.99963 * 174.16056 * 12 11 10 14 14 C 1.38893 * 120.06409 * 359.72983 * 13 12 11 15 15 C 1.38109 * 119.93684 * 179.72391 * 14 13 12 16 16 C 1.38375 * 120.06014 * 0.54513 * 15 14 13 17 17 Cl 1.73609 * 119.93786 * 179.70251 * 16 15 14 18 18 C 1.38384 * 120.12649 * 359.72817 * 16 15 14 19 19 C 1.38109 * 120.06016 * 359.97438 * 18 16 15 20 20 C 1.46850 * 111.19790 * 298.25813 * 12 11 10 21 21 C 1.53042 * 109.52103 * 61.74104 * 20 12 11 22 22 H 0.96999 * 120.00452 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.52340 * 300.12600 * 9 7 2 24 24 H 1.09003 * 109.50689 * 62.43895 * 10 9 7 25 25 H 1.09001 * 109.54039 * 302.33523 * 10 9 7 26 26 H 1.09002 * 109.46536 * 299.16137 * 11 10 9 27 27 H 1.09001 * 109.45860 * 179.19526 * 11 10 9 28 28 H 1.08001 * 120.03085 * 359.97087 * 14 13 12 29 29 H 1.08003 * 119.96558 * 180.25403 * 15 14 13 30 30 H 1.07996 * 119.96742 * 179.97438 * 18 16 15 31 31 H 1.07996 * 120.03266 * 179.97438 * 19 18 16 32 32 H 1.08992 * 109.46462 * 181.75507 * 20 12 11 33 33 H 1.09000 * 109.46104 * 301.73072 * 20 12 11 34 34 H 1.08996 * 109.50008 * 180.88005 * 21 20 12 35 35 H 1.08995 * 109.53279 * 60.78118 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2452 -3.6637 -0.0018 11 6 1.4754 -4.9850 -0.0617 12 7 0.6526 -5.0190 -1.2776 13 6 0.0377 -6.2644 -1.4315 14 6 0.2544 -7.2678 -0.4959 15 6 -0.3591 -8.4958 -0.6476 16 6 -1.1801 -8.7307 -1.7365 17 17 -1.9436 -10.2780 -1.9281 18 6 -1.3933 -7.7346 -2.6732 19 6 -0.7872 -6.5027 -2.5233 20 6 -0.3412 -3.9379 -1.2766 21 6 0.3744 -2.5853 -1.2529 22 1 -0.4851 0.8400 0.0004 23 1 0.6229 -2.5570 0.8883 24 1 2.8438 -3.6324 0.9086 25 1 2.8992 -3.5839 -0.8702 26 1 0.8325 -5.0709 0.8144 27 1 2.1808 -5.8159 -0.0772 28 1 0.8989 -7.0866 0.3515 29 1 -0.1942 -9.2750 0.0818 30 1 -2.0342 -7.9209 -3.5223 31 1 -0.9536 -5.7259 -3.2548 32 1 -0.9553 -4.0082 -2.1743 33 1 -0.9755 -4.0286 -0.3948 34 1 -0.3636 -1.7834 -1.2364 35 1 0.9983 -2.4876 -2.1414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259171301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:46 Heat of formation + Delta-G solvation = 0.843158 kcal Electronic energy + Delta-G solvation = -17577.773005 eV Core-core repulsion = 14793.293436 eV Total energy + Delta-G solvation = -2784.479569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28604 -38.96840 -37.30601 -35.66523 -33.38352 -32.54599 -31.25723 -29.94343 -27.40208 -24.89566 -24.28726 -22.63059 -22.20186 -20.41676 -18.83421 -18.27361 -17.08741 -16.69431 -16.45431 -15.71428 -15.49988 -14.87718 -14.79290 -14.53700 -14.45770 -14.18162 -14.04948 -13.21370 -13.09578 -12.87363 -12.76795 -12.45230 -12.39754 -12.29059 -12.03674 -11.94199 -11.69696 -11.43590 -10.89721 -10.70801 -10.44095 -10.36948 -10.00630 -8.71813 -8.08479 -6.21419 0.21897 0.34692 1.24185 1.42960 1.43491 1.51079 2.44150 2.55572 2.92945 3.19078 3.79691 3.94517 4.06325 4.19397 4.32777 4.33437 4.36749 4.50639 4.58527 4.67205 4.77272 4.88265 4.98772 5.01520 5.05414 5.16712 5.20918 5.30770 5.39580 5.51595 5.60624 5.70853 5.97749 5.99607 6.18976 6.36270 6.39682 6.89450 7.46615 8.96008 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.059592 B = 0.003754 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.745626 B = 7457.423388 C = 7724.695442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.101 4.101 11 C 0.060 3.940 12 N -0.493 5.493 13 C 0.110 3.890 14 C -0.170 4.170 15 C -0.081 4.081 16 C -0.077 4.077 17 Cl -0.075 7.075 18 C -0.083 4.083 19 C -0.142 4.142 20 C 0.074 3.926 21 C -0.098 4.098 22 H 0.260 0.740 23 H -0.007 1.007 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -16.758 -3.112 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.139 4.139 11 C -0.067 4.067 12 N -0.207 5.207 13 C 0.011 3.989 14 C -0.191 4.191 15 C -0.100 4.100 16 C -0.104 4.104 17 Cl -0.046 7.046 18 C -0.102 4.102 19 C -0.163 4.163 20 C -0.051 4.051 21 C -0.136 4.136 22 H 0.070 0.930 23 H 0.011 0.989 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.395 -16.588 -3.509 17.123 hybrid contribution -0.127 1.034 0.609 1.207 sum -2.522 -15.554 -2.900 16.021 Atomic orbital electron populations 1.69982 1.07061 1.27165 1.51390 1.25704 0.95664 1.02233 0.94840 0.85719 0.78463 0.79359 0.78753 1.19783 1.21039 1.19771 1.21540 0.93044 0.92169 1.50490 0.93021 1.18681 0.93174 0.92625 0.93116 1.21584 0.98063 0.93478 1.00805 1.22297 0.96145 0.99121 0.89092 1.58989 1.22128 1.01724 1.37856 1.19430 0.93588 0.91056 0.94778 1.21460 1.04088 0.93856 0.99720 1.21081 0.94999 0.97274 0.96690 1.20902 1.02024 0.88210 0.99265 1.98346 1.80767 1.28089 1.97403 1.21064 0.99133 0.91228 0.98753 1.20910 0.99390 0.97977 0.97988 1.22202 0.92143 0.90389 1.00388 1.21489 0.99449 0.94211 0.98479 0.93043 0.98885 0.91979 0.92911 0.94063 0.88662 0.83736 0.83216 0.83160 0.84515 0.89951 0.95444 0.91412 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.07 11.37 21.44 0.24 -51.82 16 2 C 0.01 0.78 5.31 84.65 0.45 1.23 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -29.07 8.56 25.60 0.22 -28.85 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.04 2.08 2.16 -11.46 -0.02 2.06 16 10 C -0.10 -4.03 5.32 30.65 0.16 -3.86 16 11 C 0.06 1.95 4.15 86.33 0.36 2.31 16 12 N -0.49 -16.53 4.70 -695.34 -3.27 -19.80 16 13 C 0.11 3.18 5.64 38.20 0.22 3.39 16 14 C -0.17 -4.23 8.82 22.40 0.20 -4.03 16 15 C -0.08 -1.77 9.82 22.27 0.22 -1.55 16 16 C -0.08 -1.69 6.32 22.34 0.14 -1.55 16 17 Cl -0.07 -1.47 28.95 -2.72 -0.08 -1.55 16 18 C -0.08 -1.83 9.82 22.27 0.22 -1.61 16 19 C -0.14 -3.65 9.16 22.40 0.21 -3.45 16 20 C 0.07 2.74 5.26 86.33 0.45 3.20 16 21 C -0.10 -4.52 5.12 30.65 0.16 -4.37 16 22 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 23 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.34 7.75 -2.39 -0.02 1.32 16 27 H 0.10 2.60 6.97 -2.39 -0.02 2.58 16 28 H 0.15 3.25 5.80 -2.91 -0.02 3.24 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.14 3.35 7.15 -2.91 -0.02 3.33 16 32 H 0.08 2.75 6.70 -2.39 -0.02 2.73 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 3.54 6.17 -2.39 -0.01 3.52 16 35 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -58.05 294.78 2.98 -55.07 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.08 Total: 10.00 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 2.97 Total: -37.09 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -3.03 Total: -71.63 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -58.05 2.98 -55.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259171301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.916 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds