Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47405 * 269.99978 * 3 2 1 5 5 H 1.48493 * 109.47202 * 30.00210 * 3 2 1 6 6 H 1.48503 * 109.46799 * 150.00073 * 3 2 1 7 7 C 1.37880 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00528 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99833 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.50262 * 59.91612 * 9 7 2 11 11 C 1.53118 * 109.50159 * 299.80122 * 9 7 2 12 12 C 1.53115 * 109.16297 * 182.40490 * 11 9 7 13 13 C 1.53037 * 109.27711 * 57.65218 * 12 11 9 14 14 N 1.46846 * 109.52409 * 300.82431 * 13 12 11 15 15 C 1.39752 * 110.99622 * 185.83892 * 14 13 12 16 16 C 1.38875 * 120.08240 * 348.82523 * 15 14 13 17 17 C 1.38116 * 119.93945 * 180.02562 * 16 15 14 18 18 C 1.38286 * 120.09536 * 359.97438 * 17 16 15 19 19 C 1.38268 * 120.15605 * 359.97438 * 18 17 16 20 20 C 1.38210 * 120.06437 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.05229 * 179.97438 * 20 19 18 22 22 C 1.46839 * 111.19992 * 61.74424 * 14 13 12 23 23 H 0.96996 * 119.99670 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.52446 * 302.31269 * 11 9 7 25 25 H 1.09004 * 109.52456 * 62.49851 * 11 9 7 26 26 H 1.08996 * 109.50712 * 177.59649 * 12 11 9 27 27 H 1.08997 * 109.50238 * 297.71775 * 12 11 9 28 28 H 1.09004 * 109.46478 * 180.80581 * 13 12 11 29 29 H 1.09002 * 109.46494 * 60.84283 * 13 12 11 30 30 H 1.08002 * 120.03271 * 0.04293 * 16 15 14 31 31 H 1.08003 * 119.95239 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.92475 * 179.72570 * 18 17 16 33 33 H 1.08008 * 119.96936 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.46774 * 58.27136 * 22 14 13 35 35 H 1.08994 * 109.46696 * 178.24166 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1942 0.0000 10 1 3.8751 -0.6797 0.8896 11 6 4.0232 -0.4760 -1.2517 12 6 5.5532 -0.5330 -1.2739 13 6 6.0049 -1.9947 -1.2376 14 7 5.4907 -2.6373 -0.0214 15 6 5.9930 -3.9348 0.1100 16 6 6.6664 -4.5311 -0.9481 17 6 7.1611 -5.8137 -0.8152 18 6 6.9873 -6.5046 0.3700 19 6 6.3184 -5.9143 1.4264 20 6 5.8207 -4.6311 1.3005 21 17 4.9803 -3.8906 2.6269 22 6 4.0225 -2.6368 -0.0007 23 1 -0.4849 0.8400 -0.0004 24 1 3.6275 -0.9670 -2.1408 25 1 3.6977 0.5641 -1.2337 26 1 5.9219 -0.0606 -2.1843 27 1 5.9495 -0.0081 -0.4047 28 1 7.0941 -2.0385 -1.2388 29 1 5.6198 -2.5157 -2.1142 30 1 6.8033 -3.9922 -1.8741 31 1 7.6844 -6.2778 -1.6381 32 1 7.3714 -7.5091 0.4694 33 1 6.1847 -6.4566 2.3509 34 1 3.6466 -3.1547 -0.8830 35 1 3.6717 -3.1467 0.8964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259396071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = 26.043170 kcal Electronic energy + Delta-G solvation = -18159.229552 eV Core-core repulsion = 15375.842737 eV Total energy + Delta-G solvation = -2783.386814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10754 -37.69562 -36.10766 -34.04909 -32.19687 -30.97233 -30.16532 -28.89303 -25.20639 -24.18313 -22.78777 -21.42823 -20.77304 -18.98051 -17.59971 -16.71906 -15.78006 -15.46847 -14.91359 -14.52981 -14.15489 -13.84725 -13.62681 -13.35058 -12.94133 -12.90099 -12.46502 -12.30899 -11.75720 -11.44345 -11.25306 -11.14357 -11.00984 -10.76722 -10.47890 -10.16277 -9.94557 -9.77645 -9.31315 -9.06251 -8.97246 -8.69662 -8.51952 -7.62909 -6.07394 -4.06826 1.25619 1.35375 2.47309 3.27179 3.39309 3.42180 3.65732 4.07876 4.41707 4.84786 4.93608 5.18895 5.22417 5.27979 5.33094 5.43304 5.57210 5.67961 5.80810 5.88364 6.02548 6.13939 6.19211 6.24421 6.25735 6.39009 6.44328 6.55306 6.68949 6.77316 6.81416 7.16259 7.23571 7.55274 7.60366 7.79430 8.50689 8.95582 9.54825 11.05781 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.006476 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.087072 B = 4322.559303 C = 4863.718175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.037 0.963 11 C -0.125 4.125 12 C -0.121 4.121 13 C 0.059 3.941 14 N -0.490 5.490 15 C 0.133 3.867 16 C -0.167 4.167 17 C -0.094 4.094 18 C -0.145 4.145 19 C -0.091 4.091 20 C -0.055 4.055 21 Cl -0.052 7.052 22 C 0.073 3.927 23 H 0.264 0.736 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.035 0.965 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.144 -9.534 -1.016 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.055 0.945 11 C -0.163 4.163 12 C -0.159 4.159 13 C -0.068 4.068 14 N -0.205 5.205 15 C 0.033 3.967 16 C -0.188 4.188 17 C -0.113 4.113 18 C -0.164 4.164 19 C -0.110 4.110 20 C -0.084 4.084 21 Cl -0.023 7.023 22 C -0.051 4.051 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.054 0.946 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.998 -8.987 -0.499 17.492 hybrid contribution 0.091 0.635 -0.593 0.874 sum 15.090 -8.352 -1.093 17.281 Atomic orbital electron populations 1.69898 1.06276 1.26939 1.50759 1.24960 0.94656 0.98962 0.94376 0.86854 0.80090 0.83553 0.77863 1.20669 1.22542 1.18802 1.20938 0.88494 0.94580 1.51149 0.90857 1.19175 0.96236 0.90554 0.93814 0.94462 1.22071 0.92443 1.00534 1.01219 1.21680 0.98303 0.94598 1.01277 1.22198 0.98971 0.95751 0.89923 1.59153 1.11447 1.12578 1.37291 1.18900 0.96605 0.89224 0.91948 1.21394 1.03505 0.95988 0.97962 1.21040 0.98489 0.94198 0.97532 1.20935 1.01767 1.00264 0.93444 1.20926 0.97501 0.92914 0.99696 1.20673 1.03106 0.94866 0.89767 1.98378 1.75963 1.82600 1.45368 1.22413 0.80412 1.00736 1.01507 0.92659 0.92321 0.93256 0.92234 0.91594 0.91105 0.93958 0.84991 0.85888 0.85671 0.85162 0.94638 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 3 Si 0.89 22.04 24.36 -169.99 -4.14 17.90 16 4 H -0.28 -6.74 6.89 56.52 0.39 -6.35 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 7 C -0.51 -14.34 9.14 -34.44 -0.31 -14.66 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 10 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 11 C -0.13 -2.66 4.74 -26.61 -0.13 -2.78 16 12 C -0.12 -2.07 6.09 -26.65 -0.16 -2.23 16 13 C 0.06 0.92 4.15 -3.83 -0.02 0.90 16 14 N -0.49 -8.72 4.33 -171.11 -0.74 -9.46 16 15 C 0.13 2.12 5.40 -83.73 -0.45 1.67 16 16 C -0.17 -2.22 8.82 -39.39 -0.35 -2.57 16 17 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 18 C -0.14 -1.58 10.04 -39.55 -0.40 -1.97 16 19 C -0.09 -1.14 9.82 -39.58 -0.39 -1.53 16 20 C -0.05 -0.85 6.13 -39.31 -0.24 -1.09 16 21 Cl -0.05 -0.86 26.00 -51.86 -1.35 -2.21 16 22 C 0.07 1.50 4.31 -3.84 -0.02 1.49 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.11 3.37 -51.93 -0.17 0.94 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 0.96 7.56 -51.93 -0.39 0.57 16 29 H 0.04 0.63 7.24 -51.93 -0.38 0.26 16 30 H 0.13 1.57 5.91 -52.49 -0.31 1.26 16 31 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.82 5.45 -51.93 -0.28 1.54 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -30.16 284.92 -8.76 -38.91 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.47 Total: -0.75 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.13 Total: -21.90 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.03 Total: -36.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.35 Total: -2.21 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.16 -8.76 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259396071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.958 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds