Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47405 * 269.99978 * 3 2 1 5 5 H 1.48493 * 109.47202 * 30.00210 * 3 2 1 6 6 H 1.48503 * 109.46799 * 150.00073 * 3 2 1 7 7 C 1.37880 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00528 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99833 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.50262 * 59.91612 * 9 7 2 11 11 C 1.53118 * 109.50159 * 299.80122 * 9 7 2 12 12 C 1.53115 * 109.16297 * 182.40490 * 11 9 7 13 13 C 1.53037 * 109.27711 * 57.65218 * 12 11 9 14 14 N 1.46846 * 109.52409 * 300.82431 * 13 12 11 15 15 C 1.39752 * 110.99622 * 185.83892 * 14 13 12 16 16 C 1.38875 * 120.08240 * 348.82523 * 15 14 13 17 17 C 1.38116 * 119.93945 * 180.02562 * 16 15 14 18 18 C 1.38286 * 120.09536 * 359.97438 * 17 16 15 19 19 C 1.38268 * 120.15605 * 359.97438 * 18 17 16 20 20 C 1.38210 * 120.06437 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.05229 * 179.97438 * 20 19 18 22 22 C 1.46839 * 111.19992 * 61.74424 * 14 13 12 23 23 H 0.96996 * 119.99670 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.52446 * 302.31269 * 11 9 7 25 25 H 1.09004 * 109.52456 * 62.49851 * 11 9 7 26 26 H 1.08996 * 109.50712 * 177.59649 * 12 11 9 27 27 H 1.08997 * 109.50238 * 297.71775 * 12 11 9 28 28 H 1.09004 * 109.46478 * 180.80581 * 13 12 11 29 29 H 1.09002 * 109.46494 * 60.84283 * 13 12 11 30 30 H 1.08002 * 120.03271 * 0.04293 * 16 15 14 31 31 H 1.08003 * 119.95239 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.92475 * 179.72570 * 18 17 16 33 33 H 1.08008 * 119.96936 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.46774 * 58.27136 * 22 14 13 35 35 H 1.08994 * 109.46696 * 178.24166 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1942 0.0000 10 1 3.8751 -0.6797 0.8896 11 6 4.0232 -0.4760 -1.2517 12 6 5.5532 -0.5330 -1.2739 13 6 6.0049 -1.9947 -1.2376 14 7 5.4907 -2.6373 -0.0214 15 6 5.9930 -3.9348 0.1100 16 6 6.6664 -4.5311 -0.9481 17 6 7.1611 -5.8137 -0.8152 18 6 6.9873 -6.5046 0.3700 19 6 6.3184 -5.9143 1.4264 20 6 5.8207 -4.6311 1.3005 21 17 4.9803 -3.8906 2.6269 22 6 4.0225 -2.6368 -0.0007 23 1 -0.4849 0.8400 -0.0004 24 1 3.6275 -0.9670 -2.1408 25 1 3.6977 0.5641 -1.2337 26 1 5.9219 -0.0606 -2.1843 27 1 5.9495 -0.0081 -0.4047 28 1 7.0941 -2.0385 -1.2388 29 1 5.6198 -2.5157 -2.1142 30 1 6.8033 -3.9922 -1.8741 31 1 7.6844 -6.2778 -1.6381 32 1 7.3714 -7.5091 0.4694 33 1 6.1847 -6.4566 2.3509 34 1 3.6466 -3.1547 -0.8830 35 1 3.6717 -3.1467 0.8964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259396071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = 7.642610 kcal Electronic energy + Delta-G solvation = -18160.027460 eV Core-core repulsion = 15375.842737 eV Total energy + Delta-G solvation = -2784.184723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30049 -38.97545 -37.28046 -35.70181 -34.00948 -32.35675 -31.46052 -30.07108 -27.04837 -25.56532 -24.08241 -22.57271 -22.23697 -20.54225 -19.06988 -18.43766 -17.06904 -16.63755 -16.42348 -15.95892 -15.62685 -15.16294 -14.90246 -14.71582 -14.60635 -14.21250 -14.14176 -13.73951 -13.03894 -12.80462 -12.71045 -12.44716 -12.37613 -12.27420 -12.04672 -11.77196 -11.69714 -11.37802 -11.00251 -10.93552 -10.60061 -10.41132 -9.72839 -8.82901 -8.31791 -6.35589 0.26447 0.35046 1.27728 1.34635 1.35266 1.45960 2.31269 2.62315 2.91042 3.03862 3.84467 3.93820 4.02623 4.14355 4.19033 4.32185 4.38825 4.43402 4.49231 4.60816 4.67624 4.77130 4.86698 4.91660 4.96900 5.05775 5.13573 5.29349 5.33071 5.40679 5.51711 5.60894 5.67637 5.84042 6.04126 6.27476 6.35658 6.70608 7.29756 8.85142 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.006476 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.087072 B = 4322.559303 C = 4863.718175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.031 0.969 9 C 0.023 3.977 10 H 0.022 0.978 11 C -0.124 4.124 12 C -0.115 4.115 13 C 0.058 3.942 14 N -0.500 5.500 15 C 0.100 3.900 16 C -0.168 4.168 17 C -0.088 4.088 18 C -0.132 4.132 19 C -0.097 4.097 20 C -0.076 4.076 21 Cl -0.078 7.078 22 C 0.088 3.912 23 H 0.266 0.734 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.021 0.979 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.658 -10.339 -2.398 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.227 1.227 6 H -0.175 1.175 7 C -0.557 4.557 8 H 0.049 0.951 9 C 0.004 3.996 10 H 0.040 0.960 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.215 5.215 15 C 0.001 3.999 16 C -0.189 4.189 17 C -0.107 4.107 18 C -0.150 4.150 19 C -0.116 4.116 20 C -0.105 4.105 21 Cl -0.050 7.050 22 C -0.037 4.037 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.164 0.836 34 H 0.040 0.960 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.549 -9.822 -1.888 21.074 hybrid contribution -0.989 0.656 -0.168 1.199 sum 17.560 -9.166 -2.056 19.915 Atomic orbital electron populations 1.70047 1.08157 1.28024 1.52687 1.25811 0.95384 1.02860 0.94091 0.85820 0.78999 0.78655 0.78851 1.18754 1.22730 1.17481 1.21245 0.91211 0.92990 1.50239 0.95061 1.19043 0.93143 0.92877 0.94526 0.96034 1.21952 0.95911 0.99062 0.99274 1.21655 0.94629 0.96115 1.02827 1.22302 1.00598 0.94512 0.89392 1.59051 1.08993 1.14610 1.38887 1.19066 0.98591 0.89015 0.93180 1.21646 1.02667 0.96965 0.97583 1.21495 0.97363 0.93193 0.98603 1.21418 0.99690 1.01510 0.92418 1.21234 0.97281 0.91926 1.01206 1.20991 1.04115 0.96120 0.89287 1.98362 1.76744 1.83229 1.46628 1.21991 0.83296 0.98210 1.00175 0.92518 0.92737 0.94410 0.88834 0.91994 0.88134 0.93143 0.83516 0.82251 0.82052 0.83603 0.96025 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 2 C 0.02 0.93 5.45 84.65 0.46 1.39 16 3 Si 0.95 46.09 24.36 68.60 1.67 47.76 16 4 H -0.26 -11.88 6.89 99.48 0.69 -11.19 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 7 C -0.52 -30.36 9.14 25.60 0.23 -30.12 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.02 1.12 1.85 -11.49 -0.02 1.10 16 10 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 11 C -0.12 -5.17 4.74 30.67 0.15 -5.02 16 12 C -0.11 -3.60 6.09 30.65 0.19 -3.42 16 13 C 0.06 1.66 4.15 86.33 0.36 2.02 16 14 N -0.50 -17.34 4.33 -695.28 -3.01 -20.35 16 15 C 0.10 3.04 5.40 38.21 0.21 3.24 16 16 C -0.17 -3.89 8.82 22.39 0.20 -3.69 16 17 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 18 C -0.13 -2.30 10.04 22.29 0.22 -2.07 16 19 C -0.10 -2.22 9.82 22.27 0.22 -2.00 16 20 C -0.08 -2.29 6.13 22.44 0.14 -2.16 16 21 Cl -0.08 -2.67 26.00 -2.72 -0.07 -2.74 16 22 C 0.09 3.73 4.31 86.33 0.37 4.11 16 23 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.04 1.64 3.37 -2.38 -0.01 1.63 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.10 2.31 7.56 -2.38 -0.02 2.29 16 29 H 0.05 1.36 7.24 -2.39 -0.02 1.34 16 30 H 0.15 2.89 5.91 -2.91 -0.02 2.87 16 31 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 3.17 5.45 -2.39 -0.01 3.16 16 Total: -1.00 -69.12 284.92 2.84 -66.27 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.01 Total: 7.08 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 2.94 Total: -37.95 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.71 Total: -80.42 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.67 Total: 47.76 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.07 Total: -2.74 kcal Total: -69.12 2.84 -66.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259396071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.914 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds