Wall clock time and date at job start Mon Mar 30 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48502 * 109.47073 * 239.99769 * 3 2 1 5 5 H 1.48508 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47507 * 120.00016 * 3 2 1 7 7 C 1.37878 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00256 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.45783 * 305.36946 * 9 7 2 11 11 C 1.53041 * 109.46644 * 65.34257 * 9 7 2 12 12 C 1.53192 * 109.30433 * 179.19479 * 11 9 7 13 13 C 1.53124 * 109.11697 * 302.37583 * 12 11 9 14 14 C 1.53028 * 109.31395 * 57.63301 * 13 12 11 15 15 N 1.46843 * 109.46518 * 185.39762 * 9 7 2 16 16 C 1.39756 * 111.00087 * 54.14236 * 15 9 7 17 17 C 1.38883 * 120.07314 * 12.43839 * 16 15 9 18 18 C 1.38121 * 119.93395 * 179.69775 * 17 16 15 19 19 C 1.38292 * 120.09415 * 0.57540 * 18 17 16 20 20 C 1.38278 * 120.15508 * 359.72076 * 19 18 17 21 21 C 1.38209 * 120.06224 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.04697 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.00148 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.50128 * 299.14036 * 11 9 7 25 25 H 1.09001 * 109.49833 * 59.21528 * 11 9 7 26 26 H 1.08995 * 109.57921 * 182.46517 * 12 11 9 27 27 H 1.09004 * 109.51560 * 62.24113 * 12 11 9 28 28 H 1.09000 * 109.49799 * 297.67202 * 13 12 11 29 29 H 1.09004 * 109.50698 * 177.60086 * 13 12 11 30 30 H 1.08998 * 109.46158 * 60.81884 * 14 13 12 31 31 H 1.08999 * 109.46811 * 180.78721 * 14 13 12 32 32 H 1.08000 * 120.03578 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95327 * 180.27447 * 18 17 16 34 34 H 1.07992 * 119.92380 * 179.74216 * 19 18 17 35 35 H 1.08004 * 119.96609 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.5540 -2.5159 0.8384 11 6 0.4753 -2.6401 -1.3111 12 6 -0.2730 -3.9768 -1.3157 13 6 0.7335 -5.1156 -1.1289 14 6 1.5017 -4.9029 0.1774 15 7 2.2002 -3.6120 0.1314 16 6 3.0172 -3.4443 1.2528 17 6 2.7033 -2.4833 2.2051 18 6 3.5093 -2.3243 3.3154 19 6 4.6346 -3.1124 3.4741 20 6 4.9540 -4.0662 2.5252 21 6 4.1486 -4.2351 1.4148 22 17 4.5497 -5.4331 0.2242 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2400 -1.8225 -1.4005 25 1 1.1704 -2.6089 -2.1501 26 1 -0.7919 -4.1017 -2.2660 27 1 -0.9958 -3.9923 -0.4999 28 1 1.4327 -5.1240 -1.9650 29 1 0.2032 -6.0671 -1.0885 30 1 0.8035 -4.9084 1.0144 31 1 2.2288 -5.7048 0.3060 32 1 1.8274 -1.8640 2.0798 33 1 3.2631 -1.5801 4.0584 34 1 5.2651 -2.9829 4.3412 35 1 5.8334 -4.6803 2.6524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259403382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:18 Heat of formation + Delta-G solvation = 20.010914 kcal Electronic energy + Delta-G solvation = -18615.197201 eV Core-core repulsion = 15831.548808 eV Total energy + Delta-G solvation = -2783.648393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63708 -37.20066 -35.81894 -33.15154 -32.95463 -30.27090 -29.47465 -28.33867 -25.52508 -23.23130 -22.55847 -21.02197 -20.69139 -18.70688 -17.13081 -16.21395 -15.39114 -15.12576 -14.47939 -14.04660 -13.87589 -13.42358 -13.14737 -13.09772 -12.73318 -12.54716 -12.33157 -11.61231 -11.22597 -11.07813 -10.97040 -10.79990 -10.77708 -10.64750 -10.28963 -10.16790 -10.01279 -9.80890 -9.33652 -8.96969 -8.83298 -8.36814 -8.15460 -6.98535 -6.14217 -4.15189 1.81707 1.97257 2.78419 3.27563 3.31777 3.36331 4.25117 4.34249 4.71400 5.18276 5.37801 5.52931 5.55310 5.62850 5.77559 5.80187 6.06884 6.12042 6.14280 6.26606 6.35939 6.49125 6.50975 6.69267 6.76203 6.77582 6.82149 7.03632 7.08083 7.12097 7.41846 7.45489 7.61420 7.74126 8.08874 8.17790 8.39827 8.89406 9.46156 10.92606 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.009947 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.735149 B = 2814.376272 C = 3994.460292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.213 3.787 10 H 0.016 0.984 11 C -0.102 4.102 12 C -0.124 4.124 13 C -0.111 4.111 14 C 0.057 3.943 15 N -0.486 5.486 16 C 0.147 3.853 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.147 4.147 20 C -0.111 4.111 21 C -0.061 4.061 22 Cl -0.081 7.081 23 H 0.263 0.737 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -7.897 3.494 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.108 3.892 10 H 0.033 0.967 11 C -0.140 4.140 12 C -0.162 4.162 13 C -0.149 4.149 14 C -0.068 4.068 15 N -0.201 5.201 16 C 0.048 3.952 17 C -0.137 4.137 18 C -0.132 4.132 19 C -0.166 4.166 20 C -0.131 4.131 21 C -0.090 4.090 22 Cl -0.052 7.052 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.177 0.823 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.946 -7.895 2.883 9.286 hybrid contribution 0.134 0.962 0.400 1.051 sum 4.081 -6.933 3.283 8.689 Atomic orbital electron populations 1.69897 1.05822 1.27014 1.49932 1.24866 0.94827 0.99022 0.95097 0.86617 0.79586 0.82779 0.78947 1.20148 1.21299 1.20067 1.21083 0.93428 0.89429 1.50417 0.91867 1.19451 0.88949 0.86600 0.94150 0.96689 1.21613 0.98861 0.94980 0.98557 1.21723 0.97562 0.96869 1.00061 1.21547 0.97963 0.97776 0.97619 1.22136 0.96254 0.91357 0.97085 1.59150 1.23461 1.04175 1.33341 1.18693 0.93064 0.94279 0.89196 1.22019 1.02094 0.98569 0.91019 1.21108 0.95159 0.98969 0.97916 1.20829 0.98649 0.97709 0.99427 1.20678 0.99218 0.99667 0.93505 1.20615 0.97636 0.97220 0.93567 1.98290 1.93087 1.55901 1.57940 0.92670 0.89359 0.93514 0.93399 0.93116 0.91624 0.92739 0.95313 0.90776 0.82270 0.86472 0.86506 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.73 55.43 0.65 -23.14 16 2 C 0.06 1.67 5.33 -17.82 -0.09 1.58 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.04 5.69 -34.44 -0.20 -13.24 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 9 C 0.21 5.06 1.17 -68.88 -0.08 4.98 16 10 H 0.02 0.40 7.19 -51.93 -0.37 0.03 16 11 C -0.10 -2.31 5.19 -26.61 -0.14 -2.44 16 12 C -0.12 -2.33 6.01 -26.57 -0.16 -2.49 16 13 C -0.11 -1.91 6.09 -26.65 -0.16 -2.07 16 14 C 0.06 1.06 5.09 -3.84 -0.02 1.04 16 15 N -0.49 -10.37 4.15 -164.88 -0.68 -11.06 16 16 C 0.15 3.05 4.64 -83.73 -0.39 2.66 16 17 C -0.12 -2.40 7.72 -39.39 -0.30 -2.70 16 18 C -0.11 -1.97 10.04 -39.60 -0.40 -2.36 16 19 C -0.15 -2.30 10.04 -39.55 -0.40 -2.69 16 20 C -0.11 -1.81 9.82 -39.58 -0.39 -2.20 16 21 C -0.06 -1.14 6.13 -39.32 -0.24 -1.38 16 22 Cl -0.08 -1.37 26.13 -51.86 -1.36 -2.73 16 23 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.09 2.20 6.53 -51.93 -0.34 1.86 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.29 5.62 -51.93 -0.29 1.00 16 32 H 0.16 3.68 5.13 -52.49 -0.27 3.41 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -26.26 288.77 -9.61 -35.88 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.59 Total: 2.33 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.97 Total: -21.32 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.03 Total: -34.20 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.36 Total: -2.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.26 -9.61 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.887 kcal (2) G-P(sol) polarization free energy of solvation -26.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds