Wall clock time and date at job start Mon Mar 30 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48502 * 109.47073 * 239.99769 * 3 2 1 5 5 H 1.48508 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47507 * 120.00016 * 3 2 1 7 7 C 1.37878 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00256 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.45783 * 305.36946 * 9 7 2 11 11 C 1.53041 * 109.46644 * 65.34257 * 9 7 2 12 12 C 1.53192 * 109.30433 * 179.19479 * 11 9 7 13 13 C 1.53124 * 109.11697 * 302.37583 * 12 11 9 14 14 C 1.53028 * 109.31395 * 57.63301 * 13 12 11 15 15 N 1.46843 * 109.46518 * 185.39762 * 9 7 2 16 16 C 1.39756 * 111.00087 * 54.14236 * 15 9 7 17 17 C 1.38883 * 120.07314 * 12.43839 * 16 15 9 18 18 C 1.38121 * 119.93395 * 179.69775 * 17 16 15 19 19 C 1.38292 * 120.09415 * 0.57540 * 18 17 16 20 20 C 1.38278 * 120.15508 * 359.72076 * 19 18 17 21 21 C 1.38209 * 120.06224 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.04697 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.00148 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.50128 * 299.14036 * 11 9 7 25 25 H 1.09001 * 109.49833 * 59.21528 * 11 9 7 26 26 H 1.08995 * 109.57921 * 182.46517 * 12 11 9 27 27 H 1.09004 * 109.51560 * 62.24113 * 12 11 9 28 28 H 1.09000 * 109.49799 * 297.67202 * 13 12 11 29 29 H 1.09004 * 109.50698 * 177.60086 * 13 12 11 30 30 H 1.08998 * 109.46158 * 60.81884 * 14 13 12 31 31 H 1.08999 * 109.46811 * 180.78721 * 14 13 12 32 32 H 1.08000 * 120.03578 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95327 * 180.27447 * 18 17 16 34 34 H 1.07992 * 119.92380 * 179.74216 * 19 18 17 35 35 H 1.08004 * 119.96609 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.5540 -2.5159 0.8384 11 6 0.4753 -2.6401 -1.3111 12 6 -0.2730 -3.9768 -1.3157 13 6 0.7335 -5.1156 -1.1289 14 6 1.5017 -4.9029 0.1774 15 7 2.2002 -3.6120 0.1314 16 6 3.0172 -3.4443 1.2528 17 6 2.7033 -2.4833 2.2051 18 6 3.5093 -2.3243 3.3154 19 6 4.6346 -3.1124 3.4741 20 6 4.9540 -4.0662 2.5252 21 6 4.1486 -4.2351 1.4148 22 17 4.5497 -5.4331 0.2242 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2400 -1.8225 -1.4005 25 1 1.1704 -2.6089 -2.1501 26 1 -0.7919 -4.1017 -2.2660 27 1 -0.9958 -3.9923 -0.4999 28 1 1.4327 -5.1240 -1.9650 29 1 0.2032 -6.0671 -1.0885 30 1 0.8035 -4.9084 1.0144 31 1 2.2288 -5.7048 0.3060 32 1 1.8274 -1.8640 2.0798 33 1 3.2631 -1.5801 4.0584 34 1 5.2651 -2.9829 4.3412 35 1 5.8334 -4.6803 2.6524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259403382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:17 Heat of formation + Delta-G solvation = 7.049424 kcal Electronic energy + Delta-G solvation = -18615.759253 eV Core-core repulsion = 15831.548808 eV Total energy + Delta-G solvation = -2784.210445 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17475 -38.69743 -37.19336 -35.02729 -34.50500 -31.85793 -31.07585 -29.80819 -27.37997 -24.79777 -24.17268 -22.53735 -22.18887 -20.35292 -18.81164 -17.97824 -16.97285 -16.68391 -16.14650 -15.54987 -15.44294 -15.01383 -14.67155 -14.58005 -14.30500 -14.15597 -13.87163 -13.28761 -12.87005 -12.72559 -12.59699 -12.45171 -12.29470 -12.18957 -12.02253 -11.71766 -11.62841 -11.51956 -10.90487 -10.83978 -10.59533 -10.11726 -9.56413 -8.56181 -8.14397 -6.20238 0.40602 0.57215 1.38896 1.39574 1.40788 1.48044 2.39517 2.85347 3.14635 3.17420 4.04954 4.06870 4.15986 4.22441 4.33881 4.49761 4.56281 4.62538 4.70374 4.77952 4.82980 5.00820 5.04713 5.10155 5.17555 5.24242 5.37735 5.42738 5.50004 5.61036 5.67862 5.74475 5.78427 6.00628 6.22964 6.43825 6.66839 6.89171 7.43089 8.91525 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.009947 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.735149 B = 2814.376272 C = 3994.460292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.045 0.955 9 C 0.225 3.775 10 H -0.018 1.018 11 C -0.098 4.098 12 C -0.118 4.118 13 C -0.105 4.105 14 C 0.055 3.945 15 N -0.493 5.493 16 C 0.118 3.882 17 C -0.144 4.144 18 C -0.114 4.114 19 C -0.133 4.133 20 C -0.104 4.104 21 C -0.072 4.072 22 Cl -0.069 7.069 23 H 0.263 0.737 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.020 0.980 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.160 0.840 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -9.171 4.246 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.119 3.881 10 H 0.000 1.000 11 C -0.137 4.137 12 C -0.155 4.155 13 C -0.142 4.142 14 C -0.070 4.070 15 N -0.209 5.209 16 C 0.020 3.980 17 C -0.165 4.165 18 C -0.133 4.133 19 C -0.152 4.152 20 C -0.123 4.123 21 C -0.101 4.101 22 Cl -0.041 7.041 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.039 0.961 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.177 0.823 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.734 -9.181 3.644 11.421 hybrid contribution -0.343 1.302 0.252 1.370 sum 5.391 -7.879 3.896 10.311 Atomic orbital electron populations 1.69999 1.06793 1.27404 1.51027 1.25454 0.95477 1.01541 0.95118 0.85806 0.78555 0.79811 0.78740 1.20364 1.20788 1.19612 1.21122 0.92515 0.90802 1.49893 0.93669 1.19140 0.88706 0.87064 0.93195 1.00030 1.21459 0.98181 0.96553 0.97459 1.21639 0.97609 0.95201 1.01082 1.21539 0.97503 0.98540 0.96641 1.22260 0.96507 0.90572 0.97692 1.59191 1.22986 1.04263 1.34423 1.18878 0.94138 0.95582 0.89442 1.21786 1.02142 0.99367 0.93172 1.21368 0.95297 0.99587 0.97075 1.21272 0.97699 0.95961 1.00233 1.21127 0.99403 0.99508 0.92232 1.20785 0.97318 0.97316 0.94635 1.98287 1.92844 1.55194 1.57726 0.92804 0.92235 0.94766 0.91221 0.93556 0.91654 0.89186 0.96140 0.89360 0.85974 0.84692 0.82286 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.92 11.73 21.45 0.25 -50.67 16 2 C 0.02 1.28 5.33 84.66 0.45 1.73 16 3 Si 0.94 43.41 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.50 -27.17 5.69 25.60 0.15 -27.03 16 8 H 0.05 2.55 7.13 -2.91 -0.02 2.53 16 9 C 0.22 11.15 1.17 44.19 0.05 11.20 16 10 H -0.02 -0.98 7.19 -2.38 -0.02 -1.00 16 11 C -0.10 -4.60 5.19 30.67 0.16 -4.44 16 12 C -0.12 -4.38 6.01 30.70 0.18 -4.20 16 13 C -0.10 -3.43 6.09 30.65 0.19 -3.24 16 14 C 0.05 2.01 5.09 86.32 0.44 2.45 16 15 N -0.49 -21.42 4.15 -675.57 -2.80 -24.22 16 16 C 0.12 4.93 4.64 38.21 0.18 5.11 16 17 C -0.14 -6.07 7.72 22.40 0.17 -5.90 16 18 C -0.11 -3.86 10.04 22.25 0.22 -3.63 16 19 C -0.13 -3.68 10.04 22.29 0.22 -3.46 16 20 C -0.10 -3.01 9.82 22.27 0.22 -2.79 16 21 C -0.07 -2.53 6.13 22.44 0.14 -2.40 16 22 Cl -0.07 -2.21 26.13 -2.72 -0.07 -2.28 16 23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.06 3.11 6.53 -2.39 -0.02 3.10 16 25 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.09 2.97 5.62 -2.39 -0.01 2.95 16 32 H 0.12 6.03 5.13 -2.91 -0.01 6.02 16 33 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -58.91 288.77 3.26 -55.65 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.08 Total: 12.68 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 2.77 Total: -36.60 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -2.55 Total: -74.89 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.07 Total: -2.28 kcal Total: -58.91 3.26 -55.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.704 kcal (2) G-P(sol) polarization free energy of solvation -58.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds