Wall clock time and date at job start Mon Mar 30 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00227 * 2 1 4 4 H 1.48506 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47106 * 299.99772 * 3 2 1 6 6 H 1.48497 * 109.47538 * 60.00319 * 3 2 1 7 7 C 1.37880 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99576 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00399 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.57506 * 299.84438 * 9 7 2 11 11 C 1.53123 * 109.52128 * 60.00199 * 9 7 2 12 12 C 1.53039 * 109.31189 * 177.58251 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.46012 * 58.27074 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38241 * 120.00472 * 24.72348 * 16 14 13 18 18 C 1.38221 * 120.01220 * 179.74250 * 17 16 14 19 19 C 1.38260 * 120.02762 * 0.55950 * 18 17 16 20 20 C 1.38193 * 120.01137 * 359.69491 * 19 18 17 21 21 C 1.38332 * 120.01026 * 204.99859 * 16 14 13 22 22 Cl 1.73598 * 120.01171 * 0.02562 * 21 16 14 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.97001 * 119.99394 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50371 * 57.61800 * 11 9 7 26 26 H 1.09003 * 109.50070 * 297.53960 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09002 * 109.46208 * 180.79044 * 12 11 9 29 29 H 1.00903 * 110.99558 * 185.83726 * 13 12 11 30 30 H 1.08001 * 119.98963 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.98445 * 180.29587 * 18 17 16 32 32 H 1.07993 * 119.99582 * 179.72026 * 19 18 17 33 33 H 1.08001 * 120.00888 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 35 35 H 1.09005 * 109.50161 * 299.23539 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6261 -2.5601 0.8905 11 6 0.3697 -2.5812 -1.2501 12 6 -0.3470 -3.9332 -1.2761 13 7 0.6462 -5.0149 -1.2847 14 6 1.4733 -4.9860 -0.0717 15 1 0.8335 -5.0746 0.8063 16 6 2.4475 -6.1354 -0.1007 17 6 2.8276 -6.6891 -1.3090 18 6 3.7253 -7.7398 -1.3362 19 6 4.2347 -8.2453 -0.1544 20 6 3.8514 -7.6960 1.0544 21 6 2.9573 -6.6403 1.0820 22 17 2.4744 -5.9506 2.6001 23 6 2.2442 -3.6656 -0.0097 24 1 -0.4849 0.8401 0.0004 25 1 0.9905 -2.4812 -2.1404 26 1 -0.3677 -1.7788 -1.2286 27 1 -0.9782 -4.0266 -0.3924 28 1 -0.9643 -3.9998 -2.1720 29 1 0.2011 -5.9134 -1.3976 30 1 2.4266 -6.2976 -2.2322 31 1 4.0256 -8.1689 -2.2807 32 1 4.9325 -9.0692 -0.1759 33 1 4.2497 -8.0906 1.9775 34 1 2.8461 -3.6379 0.8986 35 1 2.8946 -3.5826 -0.8805 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259633881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:57 Heat of formation + Delta-G solvation = -9.333986 kcal Electronic energy + Delta-G solvation = -17920.894012 eV Core-core repulsion = 15135.973129 eV Total energy + Delta-G solvation = -2784.920883 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77765 -38.88988 -37.35062 -35.35567 -33.21630 -32.47195 -31.54759 -29.74052 -27.40124 -24.61650 -23.85755 -23.11200 -21.93519 -20.29888 -18.62665 -17.92693 -17.12181 -16.64685 -16.42569 -16.01010 -14.99739 -14.95046 -14.78032 -14.60814 -14.36224 -14.19142 -13.87390 -13.40724 -12.88466 -12.77719 -12.50892 -12.48234 -12.35581 -12.29451 -12.07031 -11.90980 -11.70048 -11.41990 -10.90401 -10.68965 -10.40539 -9.77688 -9.57246 -9.33132 -8.09254 -6.22683 0.25075 0.39966 1.24378 1.38526 1.40223 1.51855 2.42577 2.75290 3.17032 3.21218 3.76279 4.03452 4.17054 4.30566 4.34610 4.42270 4.48906 4.57593 4.60123 4.78216 4.84540 4.90592 5.01884 5.11163 5.18884 5.27655 5.35514 5.49941 5.53378 5.58689 5.63810 5.97277 5.97901 5.99847 6.25310 6.38860 6.60836 6.88105 7.44876 8.95417 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024552 B = 0.005663 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.141898 B = 4943.394794 C = 5284.319777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.047 0.953 9 C 0.047 3.953 10 H -0.015 1.015 11 C -0.098 4.098 12 C 0.069 3.931 13 N -0.673 5.673 14 C 0.135 3.865 15 H 0.033 0.967 16 C -0.084 4.084 17 C -0.096 4.096 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.118 4.118 21 C -0.052 4.052 22 Cl -0.085 7.085 23 C -0.077 4.077 24 H 0.261 0.739 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.346 0.654 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.042 0.958 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -17.615 -1.650 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.029 3.971 10 H 0.003 0.997 11 C -0.136 4.136 12 C -0.060 4.060 13 N -0.305 5.305 14 C 0.025 3.975 15 H 0.051 0.949 16 C -0.085 4.085 17 C -0.114 4.114 18 C -0.132 4.132 19 C -0.126 4.126 20 C -0.136 4.136 21 C -0.078 4.078 22 Cl -0.056 7.056 23 C -0.115 4.115 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.103 0.897 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.719 -17.068 -1.884 18.099 hybrid contribution -0.577 1.161 1.152 1.734 sum 5.143 -15.907 -0.732 16.734 Atomic orbital electron populations 1.70018 1.07067 1.27014 1.51498 1.25709 0.95697 1.02230 0.94777 0.85595 0.79030 0.79861 0.77723 1.19424 1.20274 1.20615 1.21546 0.92809 0.92247 1.50425 0.93502 1.18645 0.93020 0.92255 0.93191 0.99686 1.21447 0.99186 0.95162 0.97830 1.21911 0.92734 0.91782 0.99591 1.60292 1.25399 1.06888 1.37893 1.20248 0.93036 0.92882 0.91336 0.94913 1.19797 0.99091 0.96775 0.92871 1.21255 0.97174 0.95913 0.97093 1.21641 0.95900 0.95692 0.99959 1.21495 0.99830 1.00359 0.90883 1.21278 0.96751 0.94916 1.00693 1.21070 1.01954 0.98775 0.86046 1.98365 1.91086 1.84680 1.31503 1.21432 0.97689 0.92883 0.99495 0.93020 0.94916 0.91879 0.96891 0.89722 0.83491 0.83950 0.82534 0.81907 0.83495 0.93969 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 11.35 21.45 0.24 -53.70 16 2 C 0.01 0.82 5.30 84.65 0.45 1.26 16 3 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -30.65 8.57 25.60 0.22 -30.43 16 8 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 9 C 0.05 2.49 2.17 -11.43 -0.02 2.47 16 10 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 11 C -0.10 -4.77 5.11 30.65 0.16 -4.61 16 12 C 0.07 2.64 6.55 86.32 0.57 3.21 16 13 N -0.67 -22.62 5.30 -495.55 -2.63 -25.25 16 14 C 0.13 4.94 2.16 44.19 0.10 5.03 16 15 H 0.03 1.30 7.13 -2.38 -0.02 1.29 16 16 C -0.08 -2.57 4.98 -19.84 -0.10 -2.67 16 17 C -0.10 -2.43 9.21 22.27 0.21 -2.23 16 18 C -0.11 -2.15 10.05 22.27 0.22 -1.93 16 19 C -0.11 -1.88 10.05 22.26 0.22 -1.66 16 20 C -0.12 -2.59 9.83 22.29 0.22 -2.37 16 21 C -0.05 -1.48 6.31 22.32 0.14 -1.34 16 22 Cl -0.09 -2.66 27.16 -2.72 -0.07 -2.73 16 23 C -0.08 -3.44 4.59 30.67 0.14 -3.30 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.03 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.06 3.44 6.15 -2.39 -0.01 3.43 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.35 9.56 8.63 -89.69 -0.77 8.78 16 30 H 0.14 3.59 7.25 -2.91 -0.02 3.57 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.04 1.92 7.90 -2.39 -0.02 1.90 16 35 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -64.03 297.54 2.40 -61.63 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.31 Total: 11.75 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 2.52 Total: -38.57 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -2.38 Total: -78.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.73 kcal Total: -64.03 2.40 -61.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259633881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.298 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds