Wall clock time and date at job start Mon Mar 30 2020 06:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48504 * 109.46920 * 269.99644 * 3 2 1 5 5 H 1.48498 * 109.47490 * 29.99788 * 3 2 1 6 6 H 1.48500 * 109.46905 * 150.00130 * 3 2 1 7 7 C 1.37881 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99586 * 173.45699 * 7 2 1 9 9 C 1.50697 * 119.99989 * 353.45473 * 7 2 1 10 10 H 1.09003 * 109.46022 * 325.95083 * 9 7 2 11 11 C 1.53035 * 109.46064 * 205.97249 * 9 7 2 12 12 C 1.53117 * 109.27935 * 180.80920 * 11 9 7 13 13 H 1.09003 * 109.52122 * 297.74761 * 12 11 9 14 14 C 1.50696 * 109.52585 * 177.62215 * 12 11 9 15 15 C 1.38231 * 120.00840 * 299.99537 * 14 12 11 16 16 C 1.38219 * 120.01674 * 179.97438 * 15 14 12 17 17 C 1.38259 * 120.02716 * 0.02562 * 16 15 14 18 18 C 1.38192 * 120.01165 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.00850 * 119.72327 * 14 12 11 20 20 Cl 1.73609 * 120.01200 * 359.97438 * 19 14 12 21 21 C 1.53120 * 109.16515 * 57.64704 * 12 11 9 22 22 C 1.53036 * 109.27979 * 302.35412 * 21 12 11 23 23 N 1.46843 * 109.51588 * 59.17945 * 22 21 12 24 24 H 0.96995 * 120.00428 * 174.60385 * 1 2 3 25 25 H 1.09005 * 109.50121 * 300.74158 * 11 9 7 26 26 H 1.08997 * 109.50455 * 60.82788 * 11 9 7 27 27 H 1.08003 * 119.98851 * 0.02562 * 15 14 12 28 28 H 1.07997 * 119.98426 * 180.02562 * 16 15 14 29 29 H 1.07995 * 119.99723 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.01054 * 179.97438 * 18 17 16 31 31 H 1.09006 * 109.49750 * 62.28990 * 21 12 11 32 32 H 1.09001 * 109.50572 * 182.36793 * 21 12 11 33 33 H 1.08995 * 109.46049 * 179.19241 * 22 21 12 34 34 H 1.09000 * 109.46233 * 299.16960 * 22 21 12 35 35 H 1.00903 * 110.99365 * 174.15469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1972 -0.1060 9 6 1.2583 -2.4948 0.1499 10 1 0.4003 -2.3480 0.8059 11 6 2.1880 -3.5494 0.7545 12 6 1.4318 -4.8744 0.8857 13 1 0.5890 -4.7471 1.5651 14 6 2.3591 -5.9321 1.4263 15 6 3.5040 -6.2697 0.7290 16 6 4.3549 -7.2395 1.2250 17 6 4.0614 -7.8729 2.4184 18 6 2.9166 -7.5370 3.1158 19 6 2.0678 -6.5615 2.6232 20 17 0.6341 -6.1326 3.5033 21 6 0.9180 -5.2985 -0.4929 22 6 0.0252 -4.1932 -1.0614 23 7 0.7949 -2.9472 -1.1681 24 1 -0.4850 -0.8362 -0.0790 25 1 3.0530 -3.6869 0.1057 26 1 2.5200 -3.2203 1.7391 27 1 3.7340 -5.7750 -0.2030 28 1 5.2494 -7.5025 0.6800 29 1 4.7263 -8.6308 2.8052 30 1 2.6871 -8.0321 4.0479 31 1 1.7631 -5.4634 -1.1613 32 1 0.3428 -6.2197 -0.3994 33 1 -0.3307 -4.4859 -2.0492 34 1 -0.8269 -4.0381 -0.3996 35 1 0.2570 -2.2283 -1.6285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259691907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:56 Heat of formation + Delta-G solvation = -2.051064 kcal Electronic energy + Delta-G solvation = -17900.033563 eV Core-core repulsion = 15115.428491 eV Total energy + Delta-G solvation = -2784.605072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71069 -37.50240 -36.33112 -33.64094 -32.20810 -30.67774 -29.72336 -28.96667 -24.85441 -23.55895 -22.63710 -21.76168 -20.76278 -18.82097 -17.35629 -16.73103 -15.52268 -15.27280 -14.88523 -13.93707 -13.78564 -13.72097 -13.66409 -13.56632 -13.13061 -12.59960 -12.45057 -11.67966 -11.56207 -11.53243 -11.42572 -11.25337 -10.89661 -10.78460 -10.36125 -10.19932 -10.07967 -9.83311 -9.58318 -8.85110 -8.68652 -8.53505 -8.32409 -7.19196 -6.40880 -4.13909 1.20519 1.32218 2.25093 3.43495 3.46320 3.62595 3.67517 4.50189 4.76199 4.81942 4.99280 5.11997 5.25806 5.40288 5.46762 5.47980 5.62370 5.78492 5.83788 5.99985 6.08519 6.15671 6.22721 6.31599 6.39093 6.47771 6.48067 6.61980 6.73730 6.83022 6.85842 6.94622 7.30623 7.96349 8.38606 8.49744 8.66190 8.83365 9.58772 10.95723 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.005427 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.560061 B = 5157.940967 C = 5235.066718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.579 4.579 8 H 0.053 0.947 9 C 0.197 3.803 10 H 0.000 1.000 11 C -0.081 4.081 12 C -0.065 4.065 13 H 0.080 0.920 14 C -0.050 4.050 15 C -0.101 4.101 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.038 4.038 20 Cl -0.071 7.071 21 C -0.097 4.097 22 C 0.052 3.948 23 N -0.686 5.686 24 H 0.266 0.734 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -15.120 3.565 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.183 4.183 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.618 4.618 8 H 0.071 0.929 9 C 0.091 3.909 10 H 0.018 0.982 11 C -0.120 4.120 12 C -0.084 4.084 13 H 0.098 0.902 14 C -0.050 4.050 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.064 4.064 20 Cl -0.042 7.042 21 C -0.135 4.135 22 C -0.078 4.078 23 N -0.320 5.320 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.082 -13.762 3.587 15.103 hybrid contribution -0.779 -1.408 0.408 1.660 sum 4.303 -15.170 3.995 16.267 Atomic orbital electron populations 1.70819 1.06929 1.30462 1.46505 1.25924 0.96435 1.02869 0.93114 0.83516 0.74778 0.75015 0.76758 1.21426 1.21024 1.21415 1.21951 0.94933 0.90923 1.53969 0.92879 1.19241 0.93230 0.92610 0.85817 0.98228 1.21567 0.98562 0.91798 1.00035 1.20564 0.97016 0.93727 0.97071 0.90191 1.19998 0.96150 0.96297 0.92596 1.21085 0.93341 0.97187 1.00328 1.21228 0.99515 0.96416 0.96160 1.21012 0.96839 1.00646 0.95590 1.20980 0.94520 0.97130 1.00502 1.20893 0.90947 0.99745 0.94863 1.98355 1.38113 1.92601 1.75103 1.21533 0.99607 0.97102 0.95251 1.21851 0.94360 0.93156 0.98456 1.61081 1.41419 1.04751 1.24731 0.92336 0.92368 0.92854 0.84881 0.85670 0.85560 0.85379 0.91538 0.92950 0.92498 0.96773 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.86 13.56 55.43 0.75 -26.10 16 2 C 0.02 0.59 5.45 -17.82 -0.10 0.49 16 3 Si 1.07 24.96 29.91 -169.99 -5.08 19.87 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.58 -16.00 8.55 -34.44 -0.29 -16.30 16 8 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.20 4.91 1.96 -68.88 -0.14 4.77 16 10 H 0.00 0.00 7.11 -51.93 -0.37 -0.37 16 11 C -0.08 -1.74 4.48 -26.65 -0.12 -1.86 16 12 C -0.07 -1.18 2.32 -91.65 -0.21 -1.39 16 13 H 0.08 1.52 6.17 -51.93 -0.32 1.20 16 14 C -0.05 -0.78 4.79 -104.59 -0.50 -1.28 16 15 C -0.10 -1.42 8.67 -39.59 -0.34 -1.76 16 16 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 17 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 18 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 19 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 20 Cl -0.07 -1.04 27.01 -51.86 -1.40 -2.45 16 21 C -0.10 -1.66 5.23 -26.65 -0.14 -1.80 16 22 C 0.05 0.99 6.55 -3.84 -0.03 0.96 16 23 N -0.69 -15.66 6.49 -107.99 -0.70 -16.36 16 24 H 0.27 7.78 6.36 -40.82 -0.26 7.52 16 25 H 0.06 1.24 7.32 -51.93 -0.38 0.86 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.13 1.84 7.06 -52.48 -0.37 1.47 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.07 1.12 7.31 -51.93 -0.38 0.74 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.34 8.16 8.17 -39.29 -0.32 7.84 16 LS Contribution 296.60 15.07 4.47 4.47 Total: -1.00 -29.22 296.60 -9.83 -39.05 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.57 Total: 5.70 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.30 Total: -24.19 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.05 Total: -42.46 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.40 Total: -2.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.22 -9.83 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.000 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds