Wall clock time and date at job start Mon Mar 30 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48504 * 109.46920 * 269.99644 * 3 2 1 5 5 H 1.48498 * 109.47490 * 29.99788 * 3 2 1 6 6 H 1.48500 * 109.46905 * 150.00130 * 3 2 1 7 7 C 1.37881 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99586 * 173.45699 * 7 2 1 9 9 C 1.50697 * 119.99989 * 353.45473 * 7 2 1 10 10 H 1.09003 * 109.46022 * 325.95083 * 9 7 2 11 11 C 1.53035 * 109.46064 * 205.97249 * 9 7 2 12 12 C 1.53117 * 109.27935 * 180.80920 * 11 9 7 13 13 H 1.09003 * 109.52122 * 297.74761 * 12 11 9 14 14 C 1.50696 * 109.52585 * 177.62215 * 12 11 9 15 15 C 1.38231 * 120.00840 * 299.99537 * 14 12 11 16 16 C 1.38219 * 120.01674 * 179.97438 * 15 14 12 17 17 C 1.38259 * 120.02716 * 0.02562 * 16 15 14 18 18 C 1.38192 * 120.01165 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.00850 * 119.72327 * 14 12 11 20 20 Cl 1.73609 * 120.01200 * 359.97438 * 19 14 12 21 21 C 1.53120 * 109.16515 * 57.64704 * 12 11 9 22 22 C 1.53036 * 109.27979 * 302.35412 * 21 12 11 23 23 N 1.46843 * 109.51588 * 59.17945 * 22 21 12 24 24 H 0.96995 * 120.00428 * 174.60385 * 1 2 3 25 25 H 1.09005 * 109.50121 * 300.74158 * 11 9 7 26 26 H 1.08997 * 109.50455 * 60.82788 * 11 9 7 27 27 H 1.08003 * 119.98851 * 0.02562 * 15 14 12 28 28 H 1.07997 * 119.98426 * 180.02562 * 16 15 14 29 29 H 1.07995 * 119.99723 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.01054 * 179.97438 * 18 17 16 31 31 H 1.09006 * 109.49750 * 62.28990 * 21 12 11 32 32 H 1.09001 * 109.50572 * 182.36793 * 21 12 11 33 33 H 1.08995 * 109.46049 * 179.19241 * 22 21 12 34 34 H 1.09000 * 109.46233 * 299.16960 * 22 21 12 35 35 H 1.00903 * 110.99365 * 174.15469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1972 -0.1060 9 6 1.2583 -2.4948 0.1499 10 1 0.4003 -2.3480 0.8059 11 6 2.1880 -3.5494 0.7545 12 6 1.4318 -4.8744 0.8857 13 1 0.5890 -4.7471 1.5651 14 6 2.3591 -5.9321 1.4263 15 6 3.5040 -6.2697 0.7290 16 6 4.3549 -7.2395 1.2250 17 6 4.0614 -7.8729 2.4184 18 6 2.9166 -7.5370 3.1158 19 6 2.0678 -6.5615 2.6232 20 17 0.6341 -6.1326 3.5033 21 6 0.9180 -5.2985 -0.4929 22 6 0.0252 -4.1932 -1.0614 23 7 0.7949 -2.9472 -1.1681 24 1 -0.4850 -0.8362 -0.0790 25 1 3.0530 -3.6869 0.1057 26 1 2.5200 -3.2203 1.7391 27 1 3.7340 -5.7750 -0.2030 28 1 5.2494 -7.5025 0.6800 29 1 4.7263 -8.6308 2.8052 30 1 2.6871 -8.0321 4.0479 31 1 1.7631 -5.4634 -1.1613 32 1 0.3428 -6.2197 -0.3994 33 1 -0.3307 -4.4859 -2.0492 34 1 -0.8269 -4.0381 -0.3996 35 1 0.2570 -2.2283 -1.6285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:55 Heat of formation + Delta-G solvation = -18.861584 kcal Electronic energy + Delta-G solvation = -17900.762522 eV Core-core repulsion = 15115.428491 eV Total energy + Delta-G solvation = -2785.334031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89579 -39.02872 -37.42151 -35.43034 -33.85295 -31.65475 -31.54754 -30.26764 -26.81866 -24.98286 -23.71508 -23.41839 -22.18317 -20.38609 -19.18714 -17.93163 -16.92274 -16.56577 -16.19424 -15.70471 -15.62614 -15.18357 -14.89444 -14.76443 -14.58990 -14.07103 -13.91838 -13.39967 -13.05105 -12.80320 -12.65426 -12.59362 -12.49334 -12.17968 -11.96546 -11.88510 -11.77171 -11.33499 -11.21461 -10.70414 -10.50546 -9.81722 -9.57452 -9.09931 -8.64923 -6.38646 0.20726 0.32746 1.17777 1.53637 1.61476 1.79896 2.55692 2.68862 3.07513 3.54920 3.71950 3.79352 4.02979 4.08109 4.22197 4.29568 4.39260 4.42583 4.45733 4.60551 4.70663 4.79818 4.83051 4.91481 5.01285 5.05894 5.10145 5.20429 5.32080 5.37156 5.49585 5.59589 5.88731 5.93293 6.16696 6.46275 6.62858 6.76409 7.42325 8.72091 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.005427 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.560061 B = 5157.940967 C = 5235.066718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.026 4.026 3 Si 1.117 2.883 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.594 4.594 8 H 0.046 0.954 9 C 0.199 3.801 10 H -0.039 1.039 11 C -0.070 4.070 12 C -0.055 4.055 13 H 0.064 0.936 14 C -0.073 4.073 15 C -0.113 4.113 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.054 4.054 20 Cl -0.084 7.084 21 C -0.090 4.090 22 C 0.049 3.951 23 N -0.686 5.686 24 H 0.254 0.746 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.130 0.870 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.003 0.997 35 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -17.111 3.562 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.225 4.225 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.633 4.633 8 H 0.065 0.935 9 C 0.091 3.909 10 H -0.021 1.021 11 C -0.108 4.108 12 C -0.074 4.074 13 H 0.082 0.918 14 C -0.074 4.074 15 C -0.131 4.131 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.080 4.080 20 Cl -0.055 7.055 21 C -0.127 4.127 22 C -0.080 4.080 23 N -0.317 5.317 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.147 0.853 28 H 0.174 0.826 29 H 0.183 0.817 30 H 0.167 0.833 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.021 0.979 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.065 -15.789 3.579 17.664 hybrid contribution -1.359 -0.896 0.424 1.682 sum 5.706 -16.685 4.003 18.082 Atomic orbital electron populations 1.70928 1.07834 1.29841 1.48602 1.27298 0.96493 1.06439 0.92264 0.82928 0.74174 0.71305 0.77674 1.19826 1.21030 1.19780 1.22273 0.94801 0.92543 1.53642 0.93547 1.19142 0.92329 0.93220 0.86173 1.02131 1.21361 0.98026 0.92893 0.98557 1.20317 0.96682 0.92865 0.97542 0.91778 1.19784 0.96879 0.96878 0.93855 1.21170 0.93359 0.98203 1.00368 1.21593 0.99729 0.94969 0.96396 1.21485 0.96298 1.00339 0.94662 1.21314 0.94348 0.96200 1.01325 1.21079 0.91297 1.00901 0.94768 1.98348 1.39004 1.92831 1.75288 1.21502 0.99646 0.96972 0.94625 1.22013 0.94136 0.92028 0.99848 1.60992 1.42089 1.05591 1.23070 0.93583 0.92382 0.94527 0.85251 0.82592 0.81749 0.83286 0.90814 0.90591 0.90012 0.97925 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.56 21.45 0.29 -56.59 16 2 C -0.03 -1.51 5.45 84.65 0.46 -1.04 16 3 Si 1.12 50.58 29.91 68.60 2.05 52.63 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.59 -33.78 8.55 25.60 0.22 -33.56 16 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 9 C 0.20 10.28 1.96 44.19 0.09 10.37 16 10 H -0.04 -2.28 7.11 -2.39 -0.02 -2.29 16 11 C -0.07 -3.08 4.48 30.65 0.14 -2.94 16 12 C -0.06 -2.01 2.32 -11.46 -0.03 -2.04 16 13 H 0.06 2.51 6.17 -2.39 -0.01 2.50 16 14 C -0.07 -2.23 4.79 -19.84 -0.10 -2.33 16 15 C -0.11 -2.94 8.67 22.26 0.19 -2.74 16 16 C -0.11 -2.11 10.05 22.27 0.22 -1.89 16 17 C -0.11 -1.91 10.05 22.26 0.22 -1.69 16 18 C -0.11 -2.43 9.83 22.29 0.22 -2.21 16 19 C -0.05 -1.52 6.32 22.33 0.14 -1.38 16 20 Cl -0.08 -2.46 27.01 -2.72 -0.07 -2.54 16 21 C -0.09 -2.99 5.23 30.65 0.16 -2.83 16 22 C 0.05 1.89 6.55 86.33 0.57 2.45 16 23 N -0.69 -32.08 6.49 -495.58 -3.22 -35.30 16 24 H 0.25 15.63 6.36 -92.71 -0.59 15.04 16 25 H 0.06 2.51 7.32 -2.38 -0.02 2.49 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.13 3.39 7.06 -2.91 -0.02 3.37 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.07 2.37 7.31 -2.38 -0.02 2.35 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.32 16.31 8.17 -89.69 -0.73 15.57 16 Total: -1.00 -65.21 296.60 2.10 -63.11 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.54 Total: 20.51 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 2.51 Total: -41.83 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.93 Total: -91.89 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.07 Total: -2.54 kcal Total: -65.21 2.10 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.250 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds