Wall clock time and date at job start Mon Mar 30 2020 06:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48491 * 109.47398 * 270.00182 * 3 2 1 5 5 H 1.48504 * 109.47083 * 30.00186 * 3 2 1 6 6 H 1.48496 * 109.47282 * 150.00112 * 3 2 1 7 7 C 1.37878 * 120.00619 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00496 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99676 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.45793 * 60.02084 * 9 7 2 11 11 C 1.53037 * 109.46365 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.31211 * 60.85398 * 11 9 7 13 13 H 1.09007 * 109.52681 * 297.73305 * 12 11 9 14 14 C 1.50699 * 109.52578 * 177.60352 * 12 11 9 15 15 C 1.38230 * 120.00464 * 300.00224 * 14 12 11 16 16 C 1.38226 * 120.01273 * 179.97438 * 15 14 12 17 17 C 1.38261 * 120.02618 * 0.04385 * 16 15 14 18 18 C 1.38197 * 120.01202 * 359.97438 * 17 16 15 19 19 C 1.38331 * 120.00730 * 119.72497 * 14 12 11 20 20 Cl 1.73604 * 120.01501 * 359.97438 * 19 14 12 21 21 C 1.53125 * 109.16368 * 57.63311 * 12 11 9 22 22 C 1.53035 * 109.27580 * 302.35133 * 21 12 11 23 23 N 1.46840 * 109.52994 * 59.17458 * 22 21 12 24 24 H 0.97001 * 120.00435 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50283 * 300.89215 * 11 9 7 26 26 H 1.09003 * 109.50113 * 180.81402 * 11 9 7 27 27 H 1.07999 * 120.00084 * 359.97438 * 15 14 12 28 28 H 1.07996 * 119.98661 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.99287 * 179.97438 * 17 16 15 30 30 H 1.08000 * 120.00615 * 180.02562 * 18 17 16 31 31 H 1.09005 * 109.49488 * 62.28510 * 21 12 11 32 32 H 1.08998 * 109.50244 * 182.36576 * 21 12 11 33 33 H 1.09001 * 109.46056 * 179.19389 * 22 21 12 34 34 H 1.09003 * 109.46054 * 299.16555 * 22 21 12 35 35 H 1.00905 * 110.99633 * 62.35061 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6251 -2.5563 -0.8922 11 6 2.2458 -3.6622 -0.0027 12 6 3.1097 -3.5907 1.2593 13 1 3.6842 -2.6643 1.2557 14 6 4.0513 -4.7669 1.2925 15 6 3.5487 -6.0545 1.3053 16 6 4.4122 -7.1335 1.3352 17 6 5.7789 -6.9255 1.3531 18 6 6.2825 -5.6386 1.3407 19 6 5.4187 -4.5583 1.3043 20 17 6.0508 -2.9416 1.2802 21 6 2.2023 -3.6251 2.4923 22 6 1.2095 -2.4626 2.4214 23 7 0.4067 -2.5767 1.1973 24 1 -0.4851 0.8400 0.0004 25 1 2.8832 -3.5951 -0.8844 26 1 1.7015 -4.6065 -0.0182 27 1 2.4812 -6.2177 1.2920 28 1 4.0190 -8.1393 1.3448 29 1 6.4531 -7.7689 1.3769 30 1 7.3502 -5.4763 1.3543 31 1 1.6569 -4.5685 2.5163 32 1 2.8088 -3.5322 3.3932 33 1 0.5526 -2.4926 3.2907 34 1 1.7552 -1.5191 2.4111 35 1 -0.1388 -3.4256 1.2004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:57 Heat of formation + Delta-G solvation = -6.291580 kcal Electronic energy + Delta-G solvation = -18219.587612 eV Core-core repulsion = 15434.798658 eV Total energy + Delta-G solvation = -2784.788954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87113 -39.00231 -37.34579 -34.73919 -33.57402 -31.61326 -31.53778 -29.95230 -27.18588 -24.78873 -23.64108 -23.21088 -22.03288 -20.59088 -18.09442 -17.87345 -16.89640 -16.65713 -16.28672 -15.65887 -15.04604 -14.91709 -14.74770 -14.70776 -14.61942 -13.83110 -13.56312 -13.15881 -13.06457 -12.78883 -12.72319 -12.47997 -12.42324 -12.23987 -12.11722 -11.84360 -11.43192 -11.32427 -11.15035 -10.75370 -10.40205 -9.77691 -9.51177 -8.48853 -7.92118 -6.07416 0.25459 0.37237 1.26369 1.38856 1.41647 1.49236 2.48040 2.73220 3.30424 3.72171 3.83691 4.03187 4.17574 4.23459 4.29635 4.45709 4.48491 4.53399 4.64212 4.78441 4.82745 4.91085 5.06007 5.07733 5.20085 5.27641 5.33436 5.40013 5.47834 5.52759 5.64409 5.77501 5.86239 5.95137 6.27657 6.75135 7.04665 7.40606 7.61262 9.11616 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.006976 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.971041 B = 4012.514905 C = 4773.692535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.038 3.962 3 Si 0.926 3.074 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.044 0.956 9 C 0.218 3.782 10 H 0.005 0.995 11 C -0.117 4.117 12 C -0.044 4.044 13 H 0.072 0.928 14 C -0.074 4.074 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.057 4.057 20 Cl -0.086 7.086 21 C -0.127 4.127 22 C 0.080 3.920 23 N -0.666 5.666 24 H 0.252 0.748 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 -14.958 4.711 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.165 4.165 3 Si 0.753 3.247 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.063 0.937 9 C 0.110 3.890 10 H 0.023 0.977 11 C -0.156 4.156 12 C -0.063 4.063 13 H 0.090 0.910 14 C -0.075 4.075 15 C -0.132 4.132 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.134 4.134 19 C -0.084 4.084 20 Cl -0.057 7.057 21 C -0.166 4.166 22 C -0.050 4.050 23 N -0.293 5.293 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.175 0.825 29 H 0.180 0.820 30 H 0.163 0.837 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.776 -14.004 4.688 17.710 hybrid contribution 0.786 0.791 -0.195 1.133 sum 10.562 -13.213 4.493 17.502 Atomic orbital electron populations 1.70195 1.06679 1.25806 1.49003 1.25508 0.95205 1.01008 0.94735 0.86077 0.79023 0.81593 0.77983 1.20435 1.21161 1.20027 1.21138 0.91885 0.91479 1.52057 0.93742 1.18951 0.89159 0.92037 0.88870 0.97682 1.22116 0.98314 0.98950 0.96239 1.20120 0.94960 0.95511 0.95662 0.90987 1.20034 0.92246 0.96389 0.98851 1.21169 1.01034 0.90934 1.00037 1.21595 0.93425 0.99792 0.97936 1.21457 0.96062 0.96379 0.99259 1.21299 1.00157 0.91502 1.00463 1.21140 0.93718 0.85990 1.07527 1.98360 1.86618 1.23648 1.97052 1.22169 0.98040 0.99794 0.96633 1.21628 0.94013 0.97067 0.92342 1.60577 1.26651 1.40186 1.01935 0.93900 0.94383 0.92679 0.84794 0.82515 0.81962 0.83678 0.91299 0.92271 0.92151 0.93705 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.02 12.77 21.45 0.27 -51.75 16 2 C 0.04 2.16 5.39 84.66 0.46 2.62 16 3 Si 0.93 44.94 29.54 68.60 2.03 46.96 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.53 -28.95 6.47 25.60 0.17 -28.78 16 8 H 0.04 2.48 6.77 -2.91 -0.02 2.46 16 9 C 0.22 10.76 2.96 44.19 0.13 10.90 16 10 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 11 C -0.12 -4.72 4.68 30.64 0.14 -4.58 16 12 C -0.04 -1.63 2.07 -11.46 -0.02 -1.65 16 13 H 0.07 3.09 4.77 -2.38 -0.01 3.08 16 14 C -0.07 -2.31 4.79 -19.84 -0.10 -2.40 16 15 C -0.11 -2.84 8.67 22.26 0.19 -2.65 16 16 C -0.11 -2.08 10.05 22.27 0.22 -1.85 16 17 C -0.11 -2.04 10.05 22.27 0.22 -1.82 16 18 C -0.12 -2.63 9.83 22.29 0.22 -2.41 16 19 C -0.06 -1.71 6.31 22.32 0.14 -1.56 16 20 Cl -0.09 -2.80 27.01 -2.72 -0.07 -2.87 16 21 C -0.13 -4.38 5.21 30.65 0.16 -4.23 16 22 C 0.08 3.32 6.30 86.33 0.54 3.86 16 23 N -0.67 -30.74 5.97 -495.56 -2.96 -33.71 16 24 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.96 7.32 -2.39 -0.02 1.95 16 27 H 0.13 3.12 7.06 -2.91 -0.02 3.09 16 28 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.07 2.08 7.31 -2.38 -0.02 2.07 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.04 2.18 6.99 -2.39 -0.02 2.17 16 35 H 0.31 12.71 8.86 -89.69 -0.79 11.92 16 Total: -1.00 -63.35 293.52 2.05 -61.30 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.30 Total: 14.63 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 2.48 Total: -34.56 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.69 Total: -85.45 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.87 kcal Total: -63.35 2.05 -61.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.007 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds