Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99554 * 2 1 4 4 H 1.48497 * 109.47003 * 269.99472 * 3 2 1 5 5 H 1.48493 * 109.47283 * 30.00183 * 3 2 1 6 6 H 1.48503 * 109.46516 * 149.99863 * 3 2 1 7 7 C 1.37873 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00279 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.46225 * 300.02732 * 9 7 2 11 11 C 1.53032 * 109.46355 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.27911 * 299.16376 * 11 9 7 13 13 H 1.09007 * 109.52076 * 62.25123 * 12 11 9 14 14 C 1.50697 * 109.52505 * 182.43882 * 12 11 9 15 15 C 1.38243 * 120.00468 * 59.68676 * 14 12 11 16 16 C 1.38220 * 120.01304 * 180.02562 * 15 14 12 17 17 C 1.38255 * 120.02594 * 0.02562 * 16 15 14 18 18 C 1.38190 * 120.01497 * 359.97136 * 17 16 15 19 19 C 1.38330 * 120.01205 * 239.41231 * 14 12 11 20 20 Cl 1.73602 * 120.00954 * 359.97200 * 19 14 12 21 21 C 1.53123 * 109.16001 * 302.34817 * 12 11 9 22 22 C 1.53036 * 109.27788 * 57.65365 * 21 12 11 23 23 N 1.46842 * 109.52190 * 300.81892 * 22 21 12 24 24 H 0.96998 * 120.00526 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.50421 * 59.10675 * 11 9 7 26 26 H 1.08998 * 109.50355 * 179.18511 * 11 9 7 27 27 H 1.08004 * 119.99205 * 359.97438 * 15 14 12 28 28 H 1.08003 * 119.98493 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.99280 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.00892 * 180.02562 * 18 17 16 31 31 H 1.09000 * 109.50367 * 297.70910 * 21 12 11 32 32 H 1.09006 * 109.50264 * 177.59249 * 21 12 11 33 33 H 1.09002 * 109.46126 * 60.83950 * 22 21 12 34 34 H 1.09000 * 109.45813 * 180.81566 * 22 21 12 35 35 H 1.00901 * 111.00403 * 297.64415 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 1 0.6246 -2.5560 0.8917 11 6 2.2459 -3.6621 0.0027 12 6 3.1097 -3.5896 -1.2595 13 1 3.6836 -2.6628 -1.2553 14 6 4.0509 -4.7660 -1.2939 15 6 3.5480 -6.0537 -1.3014 16 6 4.4111 -7.1329 -1.3325 17 6 5.7778 -6.9253 -1.3554 18 6 6.2817 -5.6385 -1.3480 19 6 5.4181 -4.5577 -1.3236 20 17 6.0502 -2.9408 -1.3221 21 6 2.2022 -3.6240 -2.4923 22 6 1.2088 -2.4621 -2.4209 23 7 0.4061 -2.5773 -1.1967 24 1 -0.4851 0.8400 -0.0004 25 1 2.8833 -3.5950 0.8843 26 1 1.7017 -4.6064 0.0182 27 1 2.4805 -6.2165 -1.2823 28 1 4.0177 -8.1387 -1.3380 29 1 6.4517 -7.7689 -1.3793 30 1 7.3494 -5.4764 -1.3663 31 1 1.6573 -4.5678 -2.5168 32 1 2.8085 -3.5297 -3.3932 33 1 1.7540 -1.5183 -2.4105 34 1 0.5517 -2.4923 -3.2901 35 1 -0.1389 -3.4264 -1.2001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259691931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = 9.922268 kcal Electronic energy + Delta-G solvation = -18218.111774 eV Core-core repulsion = 15434.025905 eV Total energy + Delta-G solvation = -2784.085869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65682 -37.50652 -36.19103 -33.04148 -31.83537 -30.61380 -29.77073 -28.62998 -25.16421 -23.47164 -22.50417 -21.60550 -20.61192 -18.91442 -16.99234 -15.88742 -15.54520 -15.37777 -14.44585 -14.33070 -13.67092 -13.52472 -13.50323 -13.33668 -12.97482 -12.12483 -12.07552 -11.72754 -11.57121 -11.34368 -11.24676 -10.96306 -10.83834 -10.64102 -10.47720 -10.24440 -9.95351 -9.60130 -9.47892 -8.79286 -8.74626 -8.42794 -8.25481 -6.72216 -5.80191 -3.91164 1.27210 1.38702 2.38778 3.36736 3.44097 3.47370 3.73880 4.53686 4.86579 4.88474 5.04493 5.32550 5.39885 5.48820 5.61979 5.73650 5.74680 5.86594 6.02297 6.15357 6.27192 6.32236 6.35568 6.42905 6.49593 6.60072 6.66664 6.90083 6.91995 7.02968 7.05625 7.25178 7.66339 7.97462 8.28095 8.67313 8.96891 9.26890 9.75207 11.24791 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.006972 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.292331 B = 4015.043759 C = 4773.315414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.083 3.917 3 Si 0.872 3.128 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.218 3.782 10 H 0.040 0.960 11 C -0.129 4.129 12 C -0.052 4.052 13 H 0.101 0.899 14 C -0.051 4.051 15 C -0.106 4.106 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.038 4.038 20 Cl -0.065 7.065 21 C -0.139 4.139 22 C 0.076 3.924 23 N -0.649 5.649 24 H 0.254 0.746 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.864 -12.362 -3.942 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.072 0.928 9 C 0.110 3.890 10 H 0.058 0.942 11 C -0.169 4.169 12 C -0.070 4.070 13 H 0.119 0.881 14 C -0.051 4.051 15 C -0.124 4.124 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.132 4.132 19 C -0.064 4.064 20 Cl -0.036 7.036 21 C -0.179 4.179 22 C -0.055 4.055 23 N -0.275 5.275 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.557 -11.404 -3.909 14.783 hybrid contribution 1.129 0.098 -0.073 1.136 sum 9.686 -11.305 -3.981 15.410 Atomic orbital electron populations 1.70089 1.05566 1.25397 1.47393 1.24916 0.94524 0.98252 0.94600 0.86934 0.80206 0.84787 0.78043 1.20819 1.21376 1.20059 1.20897 0.92176 0.90059 1.53274 0.92792 1.19153 0.88895 0.91419 0.89527 0.94211 1.22342 0.99107 0.99820 0.95643 1.20381 0.94955 0.95168 0.96486 0.88093 1.20252 0.92444 0.96521 0.95918 1.21022 1.00185 0.91295 0.99918 1.21194 0.93466 0.98948 0.99947 1.20980 0.95506 0.96100 1.01776 1.20994 0.99445 0.91546 1.01184 1.20932 0.93418 0.86173 1.05921 1.98371 1.86462 1.21863 1.96872 1.22321 0.98713 1.00362 0.96466 1.21733 0.93529 0.97451 0.92764 1.60807 1.25988 1.38903 1.01762 0.93640 0.92942 0.94767 0.85413 0.85908 0.85704 0.85460 0.93516 0.93262 0.90031 0.93736 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 12.77 55.43 0.71 -23.77 16 2 C 0.08 2.29 5.39 -17.82 -0.10 2.19 16 3 Si 0.87 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -13.99 6.47 -34.44 -0.22 -14.21 16 8 H 0.05 1.45 6.76 -52.48 -0.35 1.10 16 9 C 0.22 5.24 2.95 -68.88 -0.20 5.04 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.13 -2.61 4.68 -26.65 -0.12 -2.74 16 12 C -0.05 -0.96 2.07 -91.65 -0.19 -1.15 16 13 H 0.10 2.11 4.77 -51.93 -0.25 1.86 16 14 C -0.05 -0.82 4.79 -104.59 -0.50 -1.32 16 15 C -0.11 -1.49 8.66 -39.59 -0.34 -1.83 16 16 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 17 C -0.13 -1.42 10.04 -39.59 -0.40 -1.82 16 18 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16 19 C -0.04 -0.59 6.31 -39.50 -0.25 -0.84 16 20 Cl -0.06 -1.05 27.01 -51.86 -1.40 -2.45 16 21 C -0.14 -2.48 5.21 -26.65 -0.14 -2.62 16 22 C 0.08 1.58 6.30 -3.84 -0.02 1.55 16 23 N -0.65 -14.83 5.98 -108.00 -0.65 -15.47 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.62 7.30 -51.93 -0.38 0.25 16 27 H 0.13 1.70 7.06 -52.48 -0.37 1.33 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 29 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.05 0.76 7.32 -51.93 -0.38 0.38 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.94 6.99 -51.93 -0.36 1.58 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.30 6.12 8.86 -39.29 -0.35 5.78 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -28.56 293.50 -9.75 -38.31 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.54 Total: 4.00 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.28 Total: -21.37 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.06 Total: -39.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.40 Total: -2.45 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.56 -9.75 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.231 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds