Wall clock time and date at job start Mon Mar 30 2020 06:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48506 * 109.47320 * 264.68062 * 3 2 1 5 5 H 1.48497 * 109.47405 * 24.68386 * 3 2 1 6 6 H 1.48502 * 109.46858 * 144.68544 * 3 2 1 7 7 C 1.37879 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99688 * 4.97276 * 7 2 1 9 9 C 1.50697 * 119.99752 * 184.97297 * 7 2 1 10 10 H 1.08994 * 109.47315 * 25.09275 * 9 7 2 11 11 C 1.50693 * 109.47307 * 265.08517 * 9 7 2 12 12 C 1.38266 * 119.99423 * 119.99818 * 11 9 7 13 13 C 1.38211 * 120.03160 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.01170 * 359.97438 * 13 12 11 15 15 C 1.38328 * 119.98794 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 120.01504 * 180.02562 * 15 14 13 17 17 C 1.38196 * 119.99885 * 299.72981 * 11 9 7 18 18 C 1.53005 * 109.46791 * 145.09140 * 9 7 2 19 19 H 1.09000 * 110.63349 * 66.39346 * 18 9 7 20 20 C 1.55143 * 110.70455 * 189.69390 * 18 9 7 21 21 C 1.54899 * 101.65317 * 154.03444 * 20 18 9 22 22 N 1.47842 * 104.79940 * 322.92510 * 21 20 18 23 23 C 1.47446 * 108.56466 * 24.09700 * 22 21 20 24 24 H 0.97002 * 119.99867 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.98317 * 359.97438 * 12 11 9 26 26 H 1.08007 * 119.99813 * 180.02562 * 13 12 11 27 27 H 1.08009 * 120.00879 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.99816 * 0.02562 * 17 11 9 29 29 H 1.09000 * 110.98569 * 272.12560 * 20 18 9 30 30 H 1.08998 * 110.99006 * 35.93693 * 20 18 9 31 31 H 1.09006 * 110.37416 * 204.09952 * 21 20 18 32 32 H 1.09001 * 110.46905 * 81.80445 * 21 20 18 33 33 H 1.00903 * 111.00177 * 146.36169 * 22 21 20 34 34 H 1.08996 * 109.89226 * 239.60147 * 23 22 21 35 35 H 1.09001 * 110.02436 * 118.49344 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6090 1.9816 -1.3941 5 1 1.3949 2.6825 0.5847 6 1 3.4860 1.4751 0.8094 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1276 -0.0820 9 6 3.5072 -1.1966 0.1126 10 1 3.8353 -0.2865 0.6148 11 6 4.1146 -1.2570 -1.2652 12 6 4.9461 -0.2411 -1.6992 13 6 5.5040 -0.2960 -2.9625 14 6 5.2314 -1.3671 -3.7927 15 6 4.4005 -2.3843 -3.3588 16 17 4.0582 -3.7301 -4.4007 17 6 3.8450 -2.3305 -2.0927 18 6 3.9557 -2.4154 0.9215 19 1 3.7370 -3.3365 0.3813 20 6 5.4659 -2.3211 1.2638 21 6 5.5484 -3.1754 2.5533 22 7 4.2960 -2.8816 3.2817 23 6 3.2843 -2.4252 2.3110 24 1 -0.4850 0.8401 0.0004 25 1 5.1597 0.5957 -1.0507 26 1 6.1538 0.4976 -3.3008 27 1 5.6671 -1.4098 -4.7801 28 1 3.1986 -3.1258 -1.7520 29 1 6.0740 -2.7536 0.4693 30 1 5.7582 -1.2894 1.4595 31 1 6.4121 -2.8805 3.1493 32 1 5.6035 -4.2354 2.3053 33 1 3.9723 -3.6931 3.7866 34 1 2.9502 -1.4201 2.5685 35 1 2.4351 -3.1085 2.3077 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259698176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:19 Heat of formation + Delta-G solvation = 7.230297 kcal Electronic energy + Delta-G solvation = -18120.836409 eV Core-core repulsion = 15336.633808 eV Total energy + Delta-G solvation = -2784.202602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22207 -37.77671 -36.07885 -33.89041 -31.81672 -30.20027 -29.34598 -28.76193 -26.35108 -23.18352 -22.24331 -20.86624 -20.72682 -19.01422 -17.02017 -16.60475 -16.05790 -15.11662 -14.85158 -14.68688 -13.97367 -13.32754 -13.17304 -13.04413 -12.74037 -12.60911 -12.04149 -11.93964 -11.77566 -11.39914 -11.18995 -11.03887 -11.01850 -10.84057 -10.58549 -10.33377 -10.11117 -9.82115 -9.65049 -9.18811 -8.67826 -8.28789 -8.03545 -7.93676 -6.20040 -4.20271 1.70908 1.89181 2.53791 3.22662 3.27469 3.31232 4.22148 4.31840 4.72629 5.04735 5.23113 5.28400 5.34519 5.38958 5.54844 5.67817 5.74010 5.90742 6.00115 6.03309 6.14746 6.21730 6.30247 6.39646 6.55408 6.59442 6.62182 6.75555 6.84040 6.92193 7.15707 7.29614 7.38135 7.40669 7.59661 7.78067 8.36527 8.83284 9.40941 10.92034 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.009035 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.902850 B = 3098.481420 C = 4088.136929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.864 3.136 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.077 0.923 9 C 0.046 3.954 10 H 0.056 0.944 11 C -0.020 4.020 12 C -0.137 4.137 13 C -0.109 4.109 14 C -0.142 4.142 15 C -0.032 4.032 16 Cl -0.093 7.093 17 C -0.095 4.095 18 C -0.083 4.083 19 H 0.064 0.936 20 C -0.129 4.129 21 C 0.046 3.954 22 N -0.692 5.692 23 C 0.065 3.935 24 H 0.266 0.734 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.329 0.671 34 H 0.083 0.917 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -3.970 -2.011 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.691 3.309 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.540 4.540 8 H 0.095 0.905 9 C 0.027 3.973 10 H 0.074 0.926 11 C -0.021 4.021 12 C -0.156 4.156 13 C -0.127 4.127 14 C -0.161 4.161 15 C -0.059 4.059 16 Cl -0.064 7.064 17 C -0.114 4.114 18 C -0.102 4.102 19 H 0.083 0.917 20 C -0.167 4.167 21 C -0.083 4.083 22 N -0.320 5.320 23 C -0.063 4.063 24 H 0.076 0.924 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.931 -3.314 -1.876 11.575 hybrid contribution -0.024 0.034 -0.801 0.803 sum 10.907 -3.279 -2.677 11.700 Atomic orbital electron populations 1.69878 1.06246 1.27199 1.49360 1.25015 0.94650 0.98832 0.93936 0.87067 0.80491 0.84107 0.79214 1.19621 1.21410 1.18475 1.20802 0.87643 0.94755 1.50826 0.90474 1.18534 0.96488 0.95112 0.87209 0.92640 1.20785 0.90819 0.91350 0.99132 1.21177 0.98559 0.99479 0.96342 1.20931 1.00204 0.97452 0.94151 1.20744 1.00665 0.94372 1.00304 1.20927 1.01707 0.90625 0.92594 1.98322 1.94553 1.46236 1.67311 1.20848 0.99318 0.99832 0.91415 1.22314 0.92468 0.99444 0.96015 0.91732 1.22823 0.97723 1.00176 0.96022 1.22776 0.93507 0.97364 0.94685 1.61980 1.04757 1.37693 1.27610 1.22512 0.92562 1.01785 0.89475 0.92421 0.86656 0.86205 0.86139 0.85289 0.91716 0.91140 0.91390 0.94726 0.85607 0.89885 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 20.43 26.65 -169.99 -4.53 15.90 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -5.77 6.06 56.52 0.34 -5.42 16 7 C -0.50 -12.77 7.62 -34.44 -0.26 -13.03 16 8 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 9 C 0.05 0.97 0.99 -92.93 -0.09 0.88 16 10 H 0.06 1.23 4.77 -51.93 -0.25 0.98 16 11 C -0.02 -0.39 4.23 -104.63 -0.44 -0.84 16 12 C -0.14 -2.50 9.08 -39.58 -0.36 -2.86 16 13 C -0.11 -1.74 10.04 -39.59 -0.40 -2.14 16 14 C -0.14 -2.26 9.83 -39.55 -0.39 -2.65 16 15 C -0.03 -0.56 6.32 -39.50 -0.25 -0.81 16 16 Cl -0.09 -1.45 28.96 -51.86 -1.50 -2.95 16 17 C -0.10 -1.83 8.54 -39.55 -0.34 -2.17 16 18 C -0.08 -1.53 2.36 -88.79 -0.21 -1.74 16 19 H 0.06 1.20 7.26 -51.93 -0.38 0.82 16 20 C -0.13 -2.06 6.18 -24.60 -0.15 -2.21 16 21 C 0.05 0.66 7.57 -2.30 -0.02 0.64 16 22 N -0.69 -10.96 7.39 -110.79 -0.82 -11.78 16 23 C 0.06 1.20 6.46 -2.83 -0.02 1.18 16 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.12 2.02 7.76 -52.48 -0.41 1.61 16 26 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 27 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.13 2.52 7.57 -52.49 -0.40 2.12 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.16 7.97 -51.93 -0.41 0.75 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.33 4.51 8.91 -39.29 -0.35 4.16 16 34 H 0.08 1.74 7.69 -51.93 -0.40 1.34 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -27.34 298.91 -9.34 -36.68 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.75 Total: 6.44 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.03 Total: -23.71 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.05 Total: -36.87 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.53 Total: 15.90 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.50 Total: -2.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.34 -9.34 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.911 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds