Wall clock time and date at job start Mon Mar 30 2020 06:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48506 * 109.47320 * 264.68062 * 3 2 1 5 5 H 1.48497 * 109.47405 * 24.68386 * 3 2 1 6 6 H 1.48502 * 109.46858 * 144.68544 * 3 2 1 7 7 C 1.37879 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99688 * 4.97276 * 7 2 1 9 9 C 1.50697 * 119.99752 * 184.97297 * 7 2 1 10 10 H 1.08994 * 109.47315 * 25.09275 * 9 7 2 11 11 C 1.50693 * 109.47307 * 265.08517 * 9 7 2 12 12 C 1.38266 * 119.99423 * 119.99818 * 11 9 7 13 13 C 1.38211 * 120.03160 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.01170 * 359.97438 * 13 12 11 15 15 C 1.38328 * 119.98794 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 120.01504 * 180.02562 * 15 14 13 17 17 C 1.38196 * 119.99885 * 299.72981 * 11 9 7 18 18 C 1.53005 * 109.46791 * 145.09140 * 9 7 2 19 19 H 1.09000 * 110.63349 * 66.39346 * 18 9 7 20 20 C 1.55143 * 110.70455 * 189.69390 * 18 9 7 21 21 C 1.54899 * 101.65317 * 154.03444 * 20 18 9 22 22 N 1.47842 * 104.79940 * 322.92510 * 21 20 18 23 23 C 1.47446 * 108.56466 * 24.09700 * 22 21 20 24 24 H 0.97002 * 119.99867 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.98317 * 359.97438 * 12 11 9 26 26 H 1.08007 * 119.99813 * 180.02562 * 13 12 11 27 27 H 1.08009 * 120.00879 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.99816 * 0.02562 * 17 11 9 29 29 H 1.09000 * 110.98569 * 272.12560 * 20 18 9 30 30 H 1.08998 * 110.99006 * 35.93693 * 20 18 9 31 31 H 1.09006 * 110.37416 * 204.09952 * 21 20 18 32 32 H 1.09001 * 110.46905 * 81.80445 * 21 20 18 33 33 H 1.00903 * 111.00177 * 146.36169 * 22 21 20 34 34 H 1.08996 * 109.89226 * 239.60147 * 23 22 21 35 35 H 1.09001 * 110.02436 * 118.49344 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6090 1.9816 -1.3941 5 1 1.3949 2.6825 0.5847 6 1 3.4860 1.4751 0.8094 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1276 -0.0820 9 6 3.5072 -1.1966 0.1126 10 1 3.8353 -0.2865 0.6148 11 6 4.1146 -1.2570 -1.2652 12 6 4.9461 -0.2411 -1.6992 13 6 5.5040 -0.2960 -2.9625 14 6 5.2314 -1.3671 -3.7927 15 6 4.4005 -2.3843 -3.3588 16 17 4.0582 -3.7301 -4.4007 17 6 3.8450 -2.3305 -2.0927 18 6 3.9557 -2.4154 0.9215 19 1 3.7370 -3.3365 0.3813 20 6 5.4659 -2.3211 1.2638 21 6 5.5484 -3.1754 2.5533 22 7 4.2960 -2.8816 3.2817 23 6 3.2843 -2.4252 2.3110 24 1 -0.4850 0.8401 0.0004 25 1 5.1597 0.5957 -1.0507 26 1 6.1538 0.4976 -3.3008 27 1 5.6671 -1.4098 -4.7801 28 1 3.1986 -3.1258 -1.7520 29 1 6.0740 -2.7536 0.4693 30 1 5.7582 -1.2894 1.4595 31 1 6.4121 -2.8805 3.1493 32 1 5.6035 -4.2354 2.3053 33 1 3.9723 -3.6931 3.7866 34 1 2.9502 -1.4201 2.5685 35 1 2.4351 -3.1085 2.3077 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259698176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:18 Heat of formation + Delta-G solvation = -8.900080 kcal Electronic energy + Delta-G solvation = -18121.535875 eV Core-core repulsion = 15336.633808 eV Total energy + Delta-G solvation = -2784.902067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64972 -39.13037 -37.38288 -35.55789 -33.65692 -31.56091 -30.70253 -30.16590 -28.04908 -24.86250 -23.62274 -22.29382 -22.02912 -20.56570 -18.95072 -17.97540 -17.40989 -16.59556 -16.42651 -16.18173 -15.47332 -14.82080 -14.59537 -14.46571 -14.37088 -14.06871 -13.54857 -13.44826 -13.27654 -12.91807 -12.76727 -12.42614 -12.40784 -12.27264 -11.94201 -11.86305 -11.66850 -11.55102 -11.23498 -10.98843 -10.67075 -9.66272 -9.43246 -9.27747 -8.27734 -6.29912 0.33299 0.52917 1.21688 1.34001 1.35462 1.42240 2.34230 2.82900 3.09682 3.44463 3.89068 3.89960 4.04697 4.06130 4.19468 4.32600 4.47852 4.54513 4.60069 4.71152 4.71904 4.87485 4.94396 5.05872 5.11330 5.15251 5.23847 5.32360 5.39837 5.49093 5.58894 5.67613 5.82456 5.99560 6.02502 6.34240 6.57526 6.75049 7.34067 8.88206 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.009035 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.902850 B = 3098.481420 C = 4088.136929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.236 1.236 7 C -0.489 4.489 8 H 0.036 0.964 9 C 0.052 3.948 10 H 0.049 0.951 11 C -0.040 4.040 12 C -0.148 4.148 13 C -0.099 4.099 14 C -0.133 4.133 15 C -0.040 4.040 16 Cl -0.080 7.080 17 C -0.113 4.113 18 C -0.083 4.083 19 H 0.058 0.942 20 C -0.121 4.121 21 C 0.049 3.951 22 N -0.693 5.693 23 C 0.070 3.930 24 H 0.263 0.737 25 H 0.124 0.876 26 H 0.160 0.840 27 H 0.152 0.848 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.343 0.657 34 H 0.053 0.947 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 -3.500 -2.930 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.177 4.177 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.159 1.159 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.032 3.968 10 H 0.067 0.933 11 C -0.041 4.041 12 C -0.166 4.166 13 C -0.117 4.117 14 C -0.152 4.152 15 C -0.066 4.066 16 Cl -0.051 7.051 17 C -0.132 4.132 18 C -0.103 4.103 19 H 0.076 0.924 20 C -0.159 4.159 21 C -0.080 4.080 22 N -0.323 5.323 23 C -0.059 4.059 24 H 0.072 0.928 25 H 0.142 0.858 26 H 0.177 0.823 27 H 0.170 0.830 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.335 -2.870 -2.788 14.883 hybrid contribution -1.041 -0.258 -0.575 1.217 sum 13.294 -3.128 -3.364 14.065 Atomic orbital electron populations 1.70034 1.08094 1.27772 1.52590 1.25782 0.95236 1.02420 0.94312 0.86187 0.80027 0.79740 0.79774 1.18853 1.22083 1.15944 1.20964 0.90212 0.92826 1.48634 0.94584 1.18375 0.93488 0.95935 0.88953 0.93294 1.20537 0.92788 0.92754 0.98056 1.21374 0.98525 0.98984 0.97702 1.21348 0.99447 0.98107 0.92809 1.21162 0.99212 0.93289 1.01507 1.21057 1.01750 0.91650 0.92162 1.98325 1.94531 1.45686 1.66575 1.20758 1.00078 0.99679 0.92703 1.22222 0.94816 0.97939 0.95285 0.92366 1.22758 0.95298 1.00573 0.97272 1.22856 0.93111 0.98111 0.93918 1.61911 1.04619 1.38831 1.26968 1.22290 0.93195 0.99972 0.90435 0.92758 0.85814 0.82262 0.83005 0.87134 0.90392 0.91435 0.89349 0.93030 0.84088 0.92846 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 2 C 0.02 1.13 5.47 84.66 0.46 1.59 16 3 Si 0.92 42.43 26.65 68.60 1.83 44.26 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.24 -9.86 6.06 99.48 0.60 -9.26 16 7 C -0.49 -25.94 7.62 25.60 0.19 -25.74 16 8 H 0.04 2.15 8.06 -2.91 -0.02 2.13 16 9 C 0.05 2.21 0.99 -12.29 -0.01 2.19 16 10 H 0.05 2.14 4.77 -2.39 -0.01 2.13 16 11 C -0.04 -1.57 4.23 -19.87 -0.08 -1.66 16 12 C -0.15 -4.97 9.08 22.27 0.20 -4.77 16 13 C -0.10 -2.73 10.04 22.26 0.22 -2.51 16 14 C -0.13 -3.72 9.83 22.29 0.22 -3.50 16 15 C -0.04 -1.31 6.32 22.32 0.14 -1.17 16 16 Cl -0.08 -2.36 28.96 -2.72 -0.08 -2.44 16 17 C -0.11 -4.32 8.54 22.29 0.19 -4.13 16 18 C -0.08 -3.08 2.36 -9.61 -0.02 -3.10 16 19 H 0.06 2.21 7.26 -2.39 -0.02 2.20 16 20 C -0.12 -3.62 6.18 31.98 0.20 -3.42 16 21 C 0.05 1.27 7.57 86.77 0.66 1.93 16 22 N -0.69 -21.13 7.39 -504.44 -3.73 -24.86 16 23 C 0.07 2.65 6.46 86.65 0.56 3.21 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.12 3.91 7.76 -2.91 -0.02 3.89 16 26 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 27 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.11 4.51 7.57 -2.91 -0.02 4.49 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 2.07 7.97 -2.39 -0.02 2.05 16 31 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.34 8.93 8.91 -89.69 -0.80 8.13 16 34 H 0.05 2.32 7.69 -2.39 -0.02 2.30 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -61.43 298.91 1.44 -60.00 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.19 Total: 21.46 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 2.93 Total: -41.07 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -3.43 Total: -82.20 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.83 Total: 44.26 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.44 kcal Total: -61.43 1.44 -60.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.095 kcal (2) G-P(sol) polarization free energy of solvation -61.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds