Wall clock time and date at job start Mon Mar 30 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00331 * 2 1 4 4 H 1.48500 * 109.47299 * 240.00220 * 3 2 1 5 5 H 1.48505 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47159 * 119.99909 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.90518 * 297.57971 * 9 7 2 11 11 C 1.55137 * 110.99629 * 61.45011 * 9 7 2 12 12 C 1.54318 * 103.02264 * 153.74349 * 11 9 7 13 13 N 1.47442 * 107.23328 * 337.72228 * 12 11 9 14 14 C 1.46905 * 110.99789 * 236.73999 * 13 12 11 15 15 C 1.50700 * 109.46868 * 195.53843 * 14 13 12 16 16 C 1.38232 * 120.00929 * 254.96227 * 15 14 13 17 17 C 1.38222 * 120.01390 * 179.74734 * 16 15 14 18 18 C 1.38262 * 120.02685 * 0.55718 * 17 16 15 19 19 C 1.38200 * 120.01031 * 359.70001 * 18 17 16 20 20 C 1.38333 * 120.00374 * 75.24717 * 15 14 13 21 21 Cl 1.73599 * 120.01705 * 359.97438 * 20 15 14 22 22 C 1.47848 * 108.56849 * 359.00537 * 13 12 11 23 23 H 0.97005 * 119.99625 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.70148 * 35.36483 * 11 9 7 25 25 H 1.08991 * 110.70664 * 272.13013 * 11 9 7 26 26 H 1.09002 * 109.88692 * 97.12528 * 12 11 9 27 27 H 1.08996 * 109.89382 * 218.14855 * 12 11 9 28 28 H 1.08997 * 109.46946 * 315.53821 * 14 13 12 29 29 H 1.09007 * 109.47027 * 75.54325 * 14 13 12 30 30 H 1.08000 * 119.99299 * 0.02562 * 16 15 14 31 31 H 1.08005 * 119.99078 * 180.29749 * 17 16 15 32 32 H 1.07993 * 119.99490 * 179.72014 * 18 17 16 33 33 H 1.07998 * 120.00226 * 180.02562 * 19 18 17 34 34 H 1.09000 * 110.37763 * 142.92881 * 22 13 12 35 35 H 1.08998 * 110.37350 * 265.16022 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6479 -2.6000 0.9029 11 6 0.3741 -2.6346 -1.2720 12 6 0.2540 -4.1628 -1.4504 13 7 1.3921 -4.7761 -0.7416 14 6 2.1864 -5.6156 -1.6484 15 6 3.0890 -6.5126 -0.8410 16 6 4.4413 -6.2385 -0.7579 17 6 5.2684 -7.0581 -0.0132 18 6 4.7457 -8.1591 0.6397 19 6 3.3948 -8.4372 0.5530 20 6 2.5653 -7.6138 -0.1878 21 17 0.8683 -7.9626 -0.2971 22 6 2.2186 -3.6986 -0.1570 23 1 -0.4850 0.8401 0.0004 24 1 0.8703 -2.1841 -2.1317 25 1 -0.6069 -2.1868 -1.1136 26 1 -0.6838 -4.5138 -1.0197 27 1 0.2932 -4.4167 -2.5096 28 1 1.5188 -6.2251 -2.2574 29 1 2.7905 -4.9802 -2.2961 30 1 4.8510 -5.3812 -1.2714 31 1 6.3242 -6.8409 0.0554 32 1 5.3932 -8.8017 1.2177 33 1 2.9866 -9.2970 1.0633 34 1 2.6070 -4.0030 0.8149 35 1 3.0377 -3.4418 -0.8287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259733086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:46 Heat of formation + Delta-G solvation = 15.942191 kcal Electronic energy + Delta-G solvation = -17686.350499 eV Core-core repulsion = 14902.525673 eV Total energy + Delta-G solvation = -2783.824826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47542 -37.72832 -36.16053 -33.51687 -31.97943 -30.65610 -29.39488 -28.08344 -25.55067 -23.93995 -22.61253 -21.26260 -19.83426 -19.53461 -16.98194 -16.37098 -15.62541 -15.38896 -14.92673 -14.41627 -14.20412 -13.73985 -13.44099 -12.97473 -12.92190 -12.45789 -12.10618 -11.73880 -11.51364 -11.31930 -11.06418 -11.02038 -10.92164 -10.76582 -10.55324 -10.40454 -10.18153 -9.57045 -9.22757 -8.87408 -8.81140 -8.52742 -8.38061 -7.57927 -6.01454 -4.04973 1.25105 1.32014 2.39235 3.31233 3.36209 3.38374 3.67443 4.42268 4.70427 4.83074 4.90470 5.08573 5.27911 5.32187 5.43698 5.62102 5.65758 5.80727 5.92540 6.00693 6.17282 6.25782 6.29990 6.42524 6.49808 6.54157 6.57002 6.84970 6.87907 7.16860 7.21066 7.66550 7.72498 7.77543 7.89706 8.03837 8.43549 8.96733 9.59180 11.08062 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.005157 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.409130 B = 5427.835156 C = 6137.182145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.049 3.951 10 H 0.036 0.964 11 C -0.116 4.116 12 C 0.041 3.959 13 N -0.522 5.522 14 C 0.086 3.914 15 C -0.058 4.058 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.013 4.013 21 Cl -0.062 7.062 22 C 0.050 3.950 23 H 0.260 0.740 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.057 0.943 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 -15.570 -2.096 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.054 0.946 11 C -0.155 4.155 12 C -0.086 4.086 13 N -0.245 5.245 14 C -0.042 4.042 15 C -0.059 4.059 16 C -0.120 4.120 17 C -0.137 4.137 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.040 4.040 21 Cl -0.033 7.033 22 C -0.077 4.077 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.076 0.924 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.925 -15.798 -1.727 16.960 hybrid contribution 0.650 1.433 -0.630 1.695 sum 6.575 -14.364 -2.357 15.972 Atomic orbital electron populations 1.69956 1.05881 1.26569 1.50197 1.24956 0.94825 0.98967 0.94992 0.86691 0.79626 0.83280 0.78574 1.20368 1.21302 1.20255 1.20996 0.92690 0.90373 1.51300 0.92746 1.19723 0.92161 0.91070 0.94042 0.94621 1.22679 1.02196 0.90769 0.99872 1.22881 0.93797 0.96735 0.95193 1.63590 1.08713 1.21443 1.30794 1.21225 0.94927 0.94988 0.93086 1.19807 0.94101 0.94196 0.97796 1.21095 0.92415 0.99416 0.99097 1.21174 0.99986 0.95109 0.97438 1.21030 0.94512 0.97908 1.00025 1.21016 0.93478 0.99786 0.99393 1.20755 0.85493 0.97000 1.00750 1.98361 1.13639 1.94334 1.96969 1.23194 0.95828 0.91100 0.97582 0.92993 0.93464 0.90836 0.91804 0.94626 0.90346 0.93880 0.85390 0.85732 0.85586 0.85360 0.92413 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.12 55.43 0.67 -24.80 16 2 C 0.06 1.79 5.34 -17.82 -0.10 1.69 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.12 8.55 -34.44 -0.29 -14.41 16 8 H 0.05 1.47 7.79 -52.48 -0.41 1.06 16 9 C 0.05 1.24 2.96 -89.64 -0.27 0.97 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.12 -2.72 5.64 -24.91 -0.14 -2.86 16 12 C 0.04 0.81 6.84 -2.84 -0.02 0.79 16 13 N -0.52 -9.94 5.02 -232.68 -1.17 -11.11 16 14 C 0.09 1.38 4.15 -4.97 -0.02 1.36 16 15 C -0.06 -0.86 5.05 -104.59 -0.53 -1.39 16 16 C -0.10 -1.35 9.67 -39.59 -0.38 -1.73 16 17 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 18 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 19 C -0.12 -1.43 9.83 -39.55 -0.39 -1.81 16 20 C -0.01 -0.18 6.31 -39.50 -0.25 -0.43 16 21 Cl -0.06 -0.89 27.56 -51.86 -1.43 -2.32 16 22 C 0.05 1.07 5.79 -2.29 -0.01 1.05 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.05 1.14 8.03 -51.92 -0.42 0.72 16 25 H 0.07 1.85 7.54 -51.93 -0.39 1.46 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.63 7.48 -51.93 -0.39 0.24 16 28 H 0.08 1.19 7.30 -51.93 -0.38 0.82 16 29 H 0.04 0.69 7.50 -51.92 -0.39 0.30 16 30 H 0.13 1.59 8.00 -52.49 -0.42 1.17 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -28.60 303.74 -10.41 -39.02 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.85 Total: -1.41 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.19 Total: -20.17 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.50 Total: -35.91 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.43 Total: -2.32 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.60 -10.41 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.960 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds