Wall clock time and date at job start Mon Mar 30 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00331 * 2 1 4 4 H 1.48500 * 109.47299 * 240.00220 * 3 2 1 5 5 H 1.48505 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47159 * 119.99909 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.90518 * 297.57971 * 9 7 2 11 11 C 1.55137 * 110.99629 * 61.45011 * 9 7 2 12 12 C 1.54318 * 103.02264 * 153.74349 * 11 9 7 13 13 N 1.47442 * 107.23328 * 337.72228 * 12 11 9 14 14 C 1.46905 * 110.99789 * 236.73999 * 13 12 11 15 15 C 1.50700 * 109.46868 * 195.53843 * 14 13 12 16 16 C 1.38232 * 120.00929 * 254.96227 * 15 14 13 17 17 C 1.38222 * 120.01390 * 179.74734 * 16 15 14 18 18 C 1.38262 * 120.02685 * 0.55718 * 17 16 15 19 19 C 1.38200 * 120.01031 * 359.70001 * 18 17 16 20 20 C 1.38333 * 120.00374 * 75.24717 * 15 14 13 21 21 Cl 1.73599 * 120.01705 * 359.97438 * 20 15 14 22 22 C 1.47848 * 108.56849 * 359.00537 * 13 12 11 23 23 H 0.97005 * 119.99625 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.70148 * 35.36483 * 11 9 7 25 25 H 1.08991 * 110.70664 * 272.13013 * 11 9 7 26 26 H 1.09002 * 109.88692 * 97.12528 * 12 11 9 27 27 H 1.08996 * 109.89382 * 218.14855 * 12 11 9 28 28 H 1.08997 * 109.46946 * 315.53821 * 14 13 12 29 29 H 1.09007 * 109.47027 * 75.54325 * 14 13 12 30 30 H 1.08000 * 119.99299 * 0.02562 * 16 15 14 31 31 H 1.08005 * 119.99078 * 180.29749 * 17 16 15 32 32 H 1.07993 * 119.99490 * 179.72014 * 18 17 16 33 33 H 1.07998 * 120.00226 * 180.02562 * 19 18 17 34 34 H 1.09000 * 110.37763 * 142.92881 * 22 13 12 35 35 H 1.08998 * 110.37350 * 265.16022 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6479 -2.6000 0.9029 11 6 0.3741 -2.6346 -1.2720 12 6 0.2540 -4.1628 -1.4504 13 7 1.3921 -4.7761 -0.7416 14 6 2.1864 -5.6156 -1.6484 15 6 3.0890 -6.5126 -0.8410 16 6 4.4413 -6.2385 -0.7579 17 6 5.2684 -7.0581 -0.0132 18 6 4.7457 -8.1591 0.6397 19 6 3.3948 -8.4372 0.5530 20 6 2.5653 -7.6138 -0.1878 21 17 0.8683 -7.9626 -0.2971 22 6 2.2186 -3.6986 -0.1570 23 1 -0.4850 0.8401 0.0004 24 1 0.8703 -2.1841 -2.1317 25 1 -0.6069 -2.1868 -1.1136 26 1 -0.6838 -4.5138 -1.0197 27 1 0.2932 -4.4167 -2.5096 28 1 1.5188 -6.2251 -2.2574 29 1 2.7905 -4.9802 -2.2961 30 1 4.8510 -5.3812 -1.2714 31 1 6.3242 -6.8409 0.0554 32 1 5.3932 -8.8017 1.2177 33 1 2.9866 -9.2970 1.0633 34 1 2.6070 -4.0030 0.8149 35 1 3.0377 -3.4418 -0.8287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:46 Heat of formation + Delta-G solvation = 0.551802 kcal Electronic energy + Delta-G solvation = -17687.017876 eV Core-core repulsion = 14902.525673 eV Total energy + Delta-G solvation = -2784.492203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59028 -39.25382 -37.20603 -35.29826 -33.53077 -31.61907 -30.96046 -29.81265 -27.17697 -25.63098 -23.57217 -22.41727 -21.57919 -21.29453 -18.50193 -17.85459 -16.89262 -16.63193 -16.53056 -16.07955 -15.67792 -14.76370 -14.70492 -14.32254 -14.29559 -14.07633 -13.80850 -13.09779 -12.99182 -12.91024 -12.64927 -12.48911 -12.33003 -12.26851 -12.08830 -11.97692 -11.56739 -11.37928 -11.14973 -10.89909 -10.49109 -9.82063 -9.52846 -9.13249 -8.13410 -6.24494 0.28794 0.36912 1.36088 1.41543 1.42925 1.50586 2.42188 2.69907 3.17288 3.32533 3.78485 3.88969 4.11490 4.16082 4.25766 4.40617 4.47645 4.51860 4.62869 4.65575 4.69829 4.84070 4.85750 5.03959 5.04664 5.25434 5.32286 5.37521 5.49015 5.54356 5.59483 5.82155 5.91646 5.94769 6.07248 6.30374 6.37252 6.84490 7.43456 8.95471 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.005157 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.409130 B = 5427.835156 C = 6137.182145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.039 3.961 10 H -0.001 1.001 11 C -0.106 4.106 12 C 0.052 3.948 13 N -0.522 5.522 14 C 0.089 3.911 15 C -0.081 4.081 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.122 4.122 20 C -0.030 4.030 21 Cl -0.073 7.073 22 C 0.070 3.930 23 H 0.261 0.739 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.053 0.947 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 -16.623 -2.134 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.020 3.980 10 H 0.017 0.983 11 C -0.145 4.145 12 C -0.076 4.076 13 N -0.246 5.246 14 C -0.039 4.039 15 C -0.083 4.083 16 C -0.132 4.132 17 C -0.135 4.135 18 C -0.126 4.126 19 C -0.141 4.141 20 C -0.057 4.057 21 Cl -0.044 7.044 22 C -0.057 4.057 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.149 0.851 31 H 0.170 0.830 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.071 0.929 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.921 -16.868 -1.770 18.719 hybrid contribution 0.073 1.698 -0.582 1.797 sum 7.994 -15.170 -2.351 17.308 Atomic orbital electron populations 1.70092 1.07316 1.27341 1.50916 1.25759 0.95647 1.02445 0.94579 0.85651 0.78394 0.78937 0.78910 1.19484 1.21020 1.19586 1.21341 0.92933 0.91631 1.51295 0.92697 1.19680 0.92912 0.92249 0.93205 0.98276 1.22452 1.00125 0.93520 0.98436 1.22758 0.94334 0.93705 0.96788 1.63552 1.08683 1.20467 1.31922 1.21233 0.95049 0.94704 0.92895 1.19757 0.94652 0.94732 0.99119 1.21266 0.92125 1.00110 0.99741 1.21536 1.01177 0.94559 0.96232 1.21465 0.94298 0.97741 0.99131 1.21328 0.93999 0.99936 0.98838 1.20955 0.85316 0.97666 1.01795 1.98352 1.14593 1.94383 1.97081 1.22858 0.95024 0.90139 0.97682 0.93030 0.94668 0.93429 0.91574 0.92230 0.89534 0.93742 0.85121 0.82976 0.82188 0.83579 0.92876 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.86 12.12 21.45 0.26 -53.60 16 2 C 0.01 0.83 5.34 84.66 0.45 1.29 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.72 8.55 25.60 0.22 -29.50 16 8 H 0.05 2.97 7.79 -2.91 -0.02 2.95 16 9 C 0.04 2.00 2.96 -10.16 -0.03 1.97 16 10 H 0.00 -0.06 8.14 -2.38 -0.02 -0.07 16 11 C -0.11 -5.11 5.64 31.77 0.18 -4.93 16 12 C 0.05 2.01 6.84 86.65 0.59 2.60 16 13 N -0.52 -19.72 5.02 -890.07 -4.47 -24.19 16 14 C 0.09 2.77 4.15 85.56 0.35 3.13 16 15 C -0.08 -2.31 5.05 -19.84 -0.10 -2.41 16 16 C -0.11 -2.81 9.67 22.26 0.22 -2.59 16 17 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 18 C -0.11 -1.95 10.05 22.27 0.22 -1.72 16 19 C -0.12 -2.65 9.83 22.29 0.22 -2.43 16 20 C -0.03 -0.82 6.31 22.32 0.14 -0.68 16 21 Cl -0.07 -2.04 27.56 -2.72 -0.07 -2.11 16 22 C 0.07 3.02 5.79 86.77 0.50 3.53 16 23 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 24 H 0.03 1.73 8.03 -2.38 -0.02 1.71 16 25 H 0.05 2.49 7.54 -2.39 -0.02 2.47 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.06 2.03 7.48 -2.39 -0.02 2.01 16 28 H 0.09 2.53 7.30 -2.39 -0.02 2.51 16 29 H 0.04 1.37 7.50 -2.38 -0.02 1.35 16 30 H 0.13 3.05 8.00 -2.91 -0.02 3.03 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.54 7.42 -2.39 -0.02 1.52 16 Total: -1.00 -62.15 303.74 2.00 -60.15 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.07 Total: 7.86 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.19 Total: -33.81 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -4.21 Total: -77.79 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.11 kcal Total: -62.15 2.00 -60.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.702 kcal (2) G-P(sol) polarization free energy of solvation -62.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds