Wall clock time and date at job start Mon Mar 30 2020 06:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47091 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47093 * 120.00021 * 3 2 1 6 6 H 1.48500 * 109.46865 * 240.00134 * 3 2 1 7 7 C 1.37876 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00134 * 342.11763 * 7 2 1 9 9 C 1.50698 * 119.99722 * 162.12189 * 7 2 1 10 10 H 1.09007 * 109.52709 * 54.31105 * 9 7 2 11 11 C 1.53123 * 109.52260 * 294.12435 * 9 7 2 12 12 C 1.53035 * 109.27906 * 182.44156 * 11 9 7 13 13 N 1.46848 * 109.52229 * 59.18071 * 12 11 9 14 14 C 1.46846 * 111.19568 * 298.25140 * 13 12 11 15 15 H 1.08992 * 109.45980 * 301.73398 * 14 13 12 16 16 C 1.50708 * 109.46127 * 181.75635 * 14 13 12 17 17 C 1.38268 * 119.98938 * 139.94971 * 16 14 13 18 18 C 1.38221 * 120.02556 * 179.97438 * 17 16 14 19 19 C 1.38237 * 120.01027 * 0.02562 * 18 17 16 20 20 C 1.38331 * 119.98751 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 120.01052 * 180.02562 * 20 19 18 22 22 C 1.38189 * 119.99464 * 319.67669 * 16 14 13 23 23 C 1.53036 * 109.51967 * 61.74901 * 14 13 12 24 24 H 0.96999 * 119.99410 * 174.66693 * 1 2 3 25 25 H 1.09001 * 109.50019 * 302.38400 * 11 9 7 26 26 H 1.09001 * 109.50311 * 62.49742 * 11 9 7 27 27 H 1.09003 * 109.46605 * 299.16119 * 12 11 9 28 28 H 1.08997 * 109.46455 * 179.19200 * 12 11 9 29 29 H 1.00896 * 111.00205 * 62.35434 * 13 12 11 30 30 H 1.07995 * 119.98557 * 359.97438 * 17 16 14 31 31 H 1.07991 * 119.99175 * 180.02562 * 18 17 16 32 32 H 1.08003 * 120.00127 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.00541 * 0.02562 * 22 16 14 34 34 H 1.09006 * 109.50357 * 180.87482 * 23 14 13 35 35 H 1.09001 * 109.50538 * 60.76001 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 1.5037 -2.1069 0.2863 9 6 3.4570 -1.2254 -0.4012 10 1 4.0174 -0.5130 0.2044 11 6 3.5876 -0.8548 -1.8812 12 6 5.0573 -0.9475 -2.2974 13 7 5.5461 -2.3137 -2.0714 14 6 5.4747 -2.6748 -0.6499 15 1 6.0627 -1.9672 -0.0655 16 6 6.0245 -4.0647 -0.4566 17 6 6.8150 -4.3487 0.6416 18 6 7.3191 -5.6233 0.8199 19 6 7.0336 -6.6146 -0.1002 20 6 6.2436 -6.3308 -1.1997 21 17 5.8841 -7.5755 -2.3552 22 6 5.7337 -5.0563 -1.3741 23 6 4.0174 -2.6337 -0.1844 24 1 -0.4849 -0.8365 -0.0781 25 1 2.9948 -1.5441 -2.4825 26 1 3.2294 0.1632 -2.0344 27 1 5.6474 -0.2480 -1.7052 28 1 5.1519 -0.6982 -3.3543 29 1 5.0405 -2.9772 -2.6390 30 1 7.0386 -3.5743 1.3604 31 1 7.9362 -5.8446 1.6781 32 1 7.4273 -7.6106 0.0394 33 1 5.1129 -4.8353 -2.2297 34 1 3.9664 -2.8867 0.8746 35 1 3.4315 -3.3510 -0.7591 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:40 Heat of formation + Delta-G solvation = 1.838307 kcal Electronic energy + Delta-G solvation = -17733.269379 eV Core-core repulsion = 14948.832963 eV Total energy + Delta-G solvation = -2784.436416 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80617 -37.89803 -36.43527 -33.47494 -32.09983 -30.92057 -30.60774 -28.74521 -25.11221 -23.50904 -22.71914 -21.60339 -20.62147 -19.29629 -17.65097 -17.03907 -15.60478 -15.49165 -14.93468 -14.19879 -13.96126 -13.91802 -13.54295 -13.41049 -13.22552 -12.92200 -12.35190 -11.98177 -11.76188 -11.50515 -11.42325 -11.15593 -10.94340 -10.77391 -10.68163 -10.50255 -10.00339 -9.67548 -9.59932 -8.90600 -8.84284 -8.69140 -8.33886 -7.84054 -6.45318 -4.09461 1.16358 1.28364 2.09631 3.34704 3.40230 3.58483 3.62739 4.47894 4.52615 4.76425 4.81523 5.07273 5.19689 5.28834 5.37551 5.46288 5.62379 5.75058 5.77901 5.92465 5.99422 6.07066 6.19357 6.23125 6.27618 6.38153 6.56650 6.64883 6.73094 6.78971 6.86143 7.14032 7.40769 7.49215 7.67555 8.11676 8.35184 8.86724 9.58513 10.90687 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.004822 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.007896 B = 5804.834691 C = 5918.274414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.033 3.967 3 Si 1.042 2.958 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.599 4.599 8 H 0.054 0.946 9 C 0.023 3.977 10 H 0.021 0.979 11 C -0.160 4.160 12 C 0.053 3.947 13 N -0.680 5.680 14 C 0.118 3.882 15 H 0.088 0.912 16 C -0.043 4.043 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.123 4.123 20 C -0.031 4.031 21 Cl -0.079 7.079 22 C -0.099 4.099 23 C -0.122 4.122 24 H 0.267 0.733 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.334 0.666 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.057 0.943 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -10.020 -1.926 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.871 3.129 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.636 4.636 8 H 0.072 0.928 9 C 0.004 3.996 10 H 0.039 0.961 11 C -0.200 4.200 12 C -0.076 4.076 13 N -0.309 5.309 14 C 0.009 3.991 15 H 0.106 0.894 16 C -0.044 4.044 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.142 4.142 20 C -0.058 4.058 21 Cl -0.050 7.050 22 C -0.118 4.118 23 C -0.161 4.161 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.407 -8.284 -1.938 17.600 hybrid contribution -0.958 -2.007 -0.039 2.225 sum 14.449 -10.292 -1.976 17.850 Atomic orbital electron populations 1.70840 1.07216 1.30421 1.45551 1.25762 0.96062 1.02426 0.92985 0.84104 0.75471 0.76159 0.77211 1.21304 1.21087 1.19960 1.21974 0.94730 0.96393 1.50535 0.92823 1.18989 0.97297 0.91713 0.91568 0.96109 1.22774 0.94623 1.02373 1.00201 1.22103 0.95609 0.89575 1.00325 1.60927 1.59775 1.04392 1.05793 1.20675 0.96715 0.91292 0.90465 0.89420 1.19935 0.95391 0.95412 0.93663 1.21142 0.97248 0.97063 0.97569 1.21039 0.99913 0.92706 0.98835 1.20962 0.99267 1.00203 0.93788 1.20879 1.01629 0.90107 0.93169 1.98358 1.93927 1.53331 1.59411 1.20823 1.00183 0.90700 1.00101 1.22175 0.92875 1.00171 1.00870 0.92275 0.92917 0.91627 0.91583 0.91706 0.84811 0.85378 0.85283 0.85375 0.85214 0.92412 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.70 55.43 0.76 -26.93 16 2 C 0.03 0.93 5.34 -17.82 -0.10 0.83 16 3 Si 1.04 24.72 26.41 -169.99 -4.49 20.23 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -5.90 5.57 56.52 0.31 -5.59 16 7 C -0.60 -16.50 8.82 -34.44 -0.30 -16.81 16 8 H 0.05 1.61 7.99 -52.49 -0.42 1.19 16 9 C 0.02 0.53 1.74 -91.65 -0.16 0.37 16 10 H 0.02 0.48 6.79 -51.93 -0.35 0.13 16 11 C -0.16 -3.30 5.05 -26.65 -0.13 -3.43 16 12 C 0.05 0.89 6.55 -3.83 -0.03 0.86 16 13 N -0.68 -10.67 6.36 -107.99 -0.69 -11.36 16 14 C 0.12 1.89 2.66 -68.87 -0.18 1.71 16 15 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 16 C -0.04 -0.62 4.95 -104.63 -0.52 -1.13 16 17 C -0.11 -1.39 9.67 -39.58 -0.38 -1.77 16 18 C -0.11 -1.16 10.05 -39.59 -0.40 -1.55 16 19 C -0.12 -1.40 9.83 -39.55 -0.39 -1.78 16 20 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 21 Cl -0.08 -0.94 28.96 -51.86 -1.50 -2.44 16 22 C -0.10 -1.37 9.07 -39.55 -0.36 -1.73 16 23 C -0.12 -2.36 4.56 -26.65 -0.12 -2.48 16 24 H 0.27 8.16 8.73 -40.82 -0.36 7.81 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.43 4.87 -51.93 -0.25 1.18 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.33 5.04 7.07 -39.29 -0.28 4.76 16 30 H 0.13 1.39 8.04 -52.49 -0.42 0.97 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 1.77 6.63 -52.49 -0.35 1.42 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -29.24 294.76 -9.48 -38.73 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.69 Total: 4.91 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.32 Total: -27.58 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.07 Total: -38.29 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.49 Total: 20.23 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.24 -9.48 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.564 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds