Wall clock time and date at job start Mon Mar 30 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47091 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47093 * 120.00021 * 3 2 1 6 6 H 1.48500 * 109.46865 * 240.00134 * 3 2 1 7 7 C 1.37876 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00134 * 342.11763 * 7 2 1 9 9 C 1.50698 * 119.99722 * 162.12189 * 7 2 1 10 10 H 1.09007 * 109.52709 * 54.31105 * 9 7 2 11 11 C 1.53123 * 109.52260 * 294.12435 * 9 7 2 12 12 C 1.53035 * 109.27906 * 182.44156 * 11 9 7 13 13 N 1.46848 * 109.52229 * 59.18071 * 12 11 9 14 14 C 1.46846 * 111.19568 * 298.25140 * 13 12 11 15 15 H 1.08992 * 109.45980 * 301.73398 * 14 13 12 16 16 C 1.50708 * 109.46127 * 181.75635 * 14 13 12 17 17 C 1.38268 * 119.98938 * 139.94971 * 16 14 13 18 18 C 1.38221 * 120.02556 * 179.97438 * 17 16 14 19 19 C 1.38237 * 120.01027 * 0.02562 * 18 17 16 20 20 C 1.38331 * 119.98751 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 120.01052 * 180.02562 * 20 19 18 22 22 C 1.38189 * 119.99464 * 319.67669 * 16 14 13 23 23 C 1.53036 * 109.51967 * 61.74901 * 14 13 12 24 24 H 0.96999 * 119.99410 * 174.66693 * 1 2 3 25 25 H 1.09001 * 109.50019 * 302.38400 * 11 9 7 26 26 H 1.09001 * 109.50311 * 62.49742 * 11 9 7 27 27 H 1.09003 * 109.46605 * 299.16119 * 12 11 9 28 28 H 1.08997 * 109.46455 * 179.19200 * 12 11 9 29 29 H 1.00896 * 111.00205 * 62.35434 * 13 12 11 30 30 H 1.07995 * 119.98557 * 359.97438 * 17 16 14 31 31 H 1.07991 * 119.99175 * 180.02562 * 18 17 16 32 32 H 1.08003 * 120.00127 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.00541 * 0.02562 * 22 16 14 34 34 H 1.09006 * 109.50357 * 180.87482 * 23 14 13 35 35 H 1.09001 * 109.50538 * 60.76001 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 1.5037 -2.1069 0.2863 9 6 3.4570 -1.2254 -0.4012 10 1 4.0174 -0.5130 0.2044 11 6 3.5876 -0.8548 -1.8812 12 6 5.0573 -0.9475 -2.2974 13 7 5.5461 -2.3137 -2.0714 14 6 5.4747 -2.6748 -0.6499 15 1 6.0627 -1.9672 -0.0655 16 6 6.0245 -4.0647 -0.4566 17 6 6.8150 -4.3487 0.6416 18 6 7.3191 -5.6233 0.8199 19 6 7.0336 -6.6146 -0.1002 20 6 6.2436 -6.3308 -1.1997 21 17 5.8841 -7.5755 -2.3552 22 6 5.7337 -5.0563 -1.3741 23 6 4.0174 -2.6337 -0.1844 24 1 -0.4849 -0.8365 -0.0781 25 1 2.9948 -1.5441 -2.4825 26 1 3.2294 0.1632 -2.0344 27 1 5.6474 -0.2480 -1.7052 28 1 5.1519 -0.6982 -3.3543 29 1 5.0405 -2.9772 -2.6390 30 1 7.0386 -3.5743 1.3604 31 1 7.9362 -5.8446 1.6781 32 1 7.4273 -7.6106 0.0394 33 1 5.1129 -4.8353 -2.2297 34 1 3.9664 -2.8867 0.8746 35 1 3.4315 -3.3510 -0.7591 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:39 Heat of formation + Delta-G solvation = -15.868600 kcal Electronic energy + Delta-G solvation = -17734.037208 eV Core-core repulsion = 14948.832963 eV Total energy + Delta-G solvation = -2785.204245 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93416 -39.18551 -37.39836 -35.35589 -33.44611 -32.56955 -31.65681 -29.98763 -26.95883 -24.79969 -23.80577 -23.04283 -21.88904 -20.92464 -19.67069 -18.16277 -16.64521 -16.61107 -16.25371 -15.77103 -15.51218 -15.14667 -14.92893 -14.72865 -14.52076 -14.41362 -13.77085 -13.52660 -13.09170 -12.68998 -12.61840 -12.46050 -12.44925 -12.20315 -12.03205 -11.91136 -11.68628 -11.39857 -11.33231 -10.79552 -10.50401 -9.88251 -9.66985 -9.27760 -8.69649 -6.38240 0.21226 0.33358 1.15452 1.44800 1.52076 1.71864 2.49804 2.66393 3.02778 3.31393 3.70179 3.85588 4.07556 4.16712 4.25679 4.31482 4.37256 4.45122 4.49092 4.55071 4.66702 4.78115 4.89201 4.97474 4.99931 5.13061 5.18811 5.26433 5.37162 5.42471 5.59618 5.68975 5.85694 5.98762 6.08973 6.09556 6.40817 6.54745 7.39322 8.60955 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.004822 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.007896 B = 5804.834691 C = 5918.274414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.020 4.020 3 Si 1.082 2.918 4 H -0.294 1.294 5 H -0.264 1.264 6 H -0.235 1.235 7 C -0.603 4.603 8 H 0.008 0.992 9 C 0.019 3.981 10 H 0.028 0.972 11 C -0.155 4.155 12 C 0.062 3.938 13 N -0.671 5.671 14 C 0.131 3.869 15 H 0.096 0.904 16 C -0.063 4.063 17 C -0.116 4.116 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.044 4.044 21 Cl -0.077 7.077 22 C -0.113 4.113 23 C -0.113 4.113 24 H 0.250 0.750 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.337 0.663 30 H 0.144 0.856 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.423 -9.934 -1.883 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.218 4.218 3 Si 0.903 3.097 4 H -0.220 1.220 5 H -0.190 1.190 6 H -0.160 1.160 7 C -0.641 4.641 8 H 0.027 0.973 9 C 0.000 4.000 10 H 0.046 0.954 11 C -0.195 4.195 12 C -0.068 4.068 13 N -0.300 5.300 14 C 0.021 3.979 15 H 0.114 0.886 16 C -0.064 4.064 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.139 4.139 20 C -0.070 4.070 21 Cl -0.048 7.048 22 C -0.132 4.132 23 C -0.153 4.153 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.862 -8.236 -1.906 20.670 hybrid contribution -2.074 -2.198 -0.008 3.022 sum 16.788 -10.434 -1.914 19.859 Atomic orbital electron populations 1.70977 1.08632 1.29368 1.48814 1.27286 0.95952 1.06473 0.92039 0.83642 0.75000 0.71440 0.79659 1.22046 1.18951 1.15954 1.22257 0.97543 0.94591 1.49701 0.97329 1.18992 0.93977 0.93936 0.93110 0.95395 1.22643 0.97627 1.01087 0.98111 1.22079 0.92401 0.90344 1.01957 1.60961 1.59208 1.04137 1.05691 1.20508 0.93929 0.93003 0.90432 0.88561 1.19818 0.97092 0.94405 0.95053 1.21415 0.96635 0.98373 0.97025 1.21423 0.99263 0.91685 0.99421 1.21328 0.98125 1.01501 0.92922 1.21021 1.02182 0.89875 0.93959 1.98356 1.93981 1.53006 1.59461 1.20840 1.00699 0.91454 1.00221 1.22036 0.95517 0.97603 1.00111 0.94166 0.94605 0.92655 0.90375 0.89338 0.84456 0.83796 0.81905 0.83071 0.85925 0.93416 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.88 13.70 21.45 0.29 -59.58 16 2 C -0.02 -1.17 5.34 84.65 0.45 -0.72 16 3 Si 1.08 49.10 26.41 68.60 1.81 50.91 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.24 -9.23 5.57 99.48 0.55 -8.68 16 7 C -0.60 -34.44 8.82 25.60 0.23 -34.21 16 8 H 0.01 0.54 7.99 -2.91 -0.02 0.51 16 9 C 0.02 0.85 1.74 -11.46 -0.02 0.83 16 10 H 0.03 1.23 6.79 -2.38 -0.02 1.22 16 11 C -0.16 -6.20 5.05 30.65 0.15 -6.05 16 12 C 0.06 1.88 6.55 86.32 0.57 2.44 16 13 N -0.67 -19.62 6.36 -495.56 -3.15 -22.77 16 14 C 0.13 3.97 2.66 44.19 0.12 4.09 16 15 H 0.10 2.77 8.00 -2.39 -0.02 2.75 16 16 C -0.06 -1.69 4.95 -19.87 -0.10 -1.79 16 17 C -0.12 -2.55 9.67 22.27 0.22 -2.34 16 18 C -0.10 -1.80 10.05 22.27 0.22 -1.58 16 19 C -0.12 -2.36 9.83 22.29 0.22 -2.14 16 20 C -0.04 -1.05 6.32 22.32 0.14 -0.91 16 21 Cl -0.08 -1.74 28.96 -2.72 -0.08 -1.82 16 22 C -0.11 -3.02 9.07 22.29 0.20 -2.82 16 23 C -0.11 -4.41 4.56 30.65 0.14 -4.27 16 24 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.05 2.30 4.87 -2.39 -0.01 2.29 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.34 9.73 7.07 -89.70 -0.63 9.10 16 30 H 0.14 2.65 8.04 -2.91 -0.02 2.63 16 31 H 0.16 1.82 8.06 -2.92 -0.02 1.80 16 32 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.12 3.33 6.63 -2.91 -0.02 3.31 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.89 294.76 1.68 -64.21 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.27 Total: 18.51 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 2.54 Total: -49.46 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -2.86 Total: -82.35 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.81 Total: 50.91 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -65.89 1.68 -64.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.339 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds