Wall clock time and date at job start Mon Mar 30 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48501 * 109.46634 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47204 * 300.00285 * 3 2 1 6 6 H 1.48495 * 109.47016 * 60.00184 * 3 2 1 7 7 C 1.37872 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99906 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.57445 * 60.15913 * 9 7 2 11 11 C 1.53123 * 109.52244 * 300.00011 * 9 7 2 12 12 C 1.53039 * 109.31189 * 297.77266 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.45906 * 58.25833 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38263 * 119.99885 * 220.00191 * 16 14 13 18 18 C 1.38214 * 120.02790 * 179.97438 * 17 16 14 19 19 C 1.38232 * 120.01517 * 359.97438 * 18 17 16 20 20 C 1.38326 * 119.98639 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01564 * 179.97438 * 20 19 18 22 22 C 1.38192 * 119.98889 * 39.72614 * 16 14 13 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.97001 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.50371 * 177.80816 * 11 9 7 26 26 H 1.09003 * 109.50070 * 57.72976 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09002 * 109.46208 * 180.79044 * 12 11 9 29 29 H 1.00903 * 110.99558 * 185.83726 * 13 12 11 30 30 H 1.08001 * 119.98003 * 359.97378 * 17 16 14 31 31 H 1.08000 * 119.99052 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.00627 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.00803 * 0.02562 * 22 16 14 34 34 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 35 35 H 1.09007 * 109.50504 * 299.19535 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5597 -0.8911 11 6 0.3708 -2.5818 1.2496 12 6 1.2583 -2.5571 2.4961 13 7 2.1906 -3.6911 2.4572 14 6 3.0789 -3.6084 1.2908 15 1 3.6337 -2.6706 1.3226 16 6 4.0453 -4.7645 1.3126 17 6 5.3660 -4.5683 0.9535 18 6 6.2530 -5.6281 0.9738 19 6 5.8203 -6.8848 1.3537 20 6 4.4991 -7.0817 1.7130 21 17 3.9547 -8.6598 2.1895 22 6 3.6126 -6.0193 1.6970 23 6 2.2458 -3.6643 0.0084 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2033 -3.5081 1.2299 26 1 -0.3110 -1.7315 1.2715 27 1 1.8218 -1.6244 2.5223 28 1 0.6349 -2.6299 3.3873 29 1 2.7220 -3.7518 3.3128 30 1 5.7046 -3.5865 0.6571 31 1 7.2846 -5.4741 0.6937 32 1 6.5136 -7.7128 1.3699 33 1 2.5819 -6.1716 1.9813 34 1 2.9040 -3.5872 -0.8569 35 1 1.7017 -4.6081 -0.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:42 Heat of formation + Delta-G solvation = 4.943013 kcal Electronic energy + Delta-G solvation = -17903.605527 eV Core-core repulsion = 15119.303741 eV Total energy + Delta-G solvation = -2784.301786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53139 -37.53621 -36.29479 -33.28420 -31.66269 -30.66867 -30.44958 -28.32457 -25.20567 -23.35887 -22.50159 -21.87569 -20.57173 -18.55611 -16.99468 -15.78132 -15.68269 -15.42813 -14.86527 -14.55994 -13.72275 -13.49602 -13.35633 -13.25098 -12.76731 -12.37574 -12.16345 -11.95538 -11.44327 -11.30376 -11.25742 -11.05664 -10.97710 -10.63904 -10.57114 -10.26907 -9.87642 -9.39739 -9.09074 -8.84988 -8.70028 -8.51888 -8.31440 -7.63089 -6.01461 -4.07080 1.29530 1.43678 2.22295 3.24848 3.34040 3.36066 3.78025 4.39747 4.76890 4.91042 5.07396 5.26020 5.29457 5.47322 5.58973 5.79119 5.96477 6.01107 6.17613 6.31614 6.36479 6.42836 6.45391 6.58856 6.72460 6.75785 6.93726 6.94378 7.03202 7.22625 7.48937 7.62290 7.70232 7.89989 8.14097 8.16320 8.43333 8.95750 9.56871 11.04066 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031951 B = 0.005076 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.139251 B = 5514.528000 C = 6038.889365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.053 0.947 9 C 0.043 3.957 10 H 0.027 0.973 11 C -0.107 4.107 12 C 0.073 3.927 13 N -0.685 5.685 14 C 0.135 3.865 15 H 0.058 0.942 16 C -0.057 4.057 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.039 4.039 21 Cl -0.083 7.083 22 C -0.086 4.086 23 C -0.092 4.092 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.324 0.676 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.142 0.858 34 H 0.049 0.951 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.012 -11.027 4.187 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.025 3.975 10 H 0.045 0.955 11 C -0.145 4.145 12 C -0.055 4.055 13 N -0.316 5.316 14 C 0.025 3.975 15 H 0.075 0.925 16 C -0.058 4.058 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.065 4.065 21 Cl -0.054 7.054 22 C -0.104 4.104 23 C -0.130 4.130 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.160 0.840 34 H 0.068 0.932 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.343 -11.441 3.910 14.690 hybrid contribution 1.072 1.537 0.313 1.900 sum 9.415 -9.904 4.222 14.302 Atomic orbital electron populations 1.69876 1.05803 1.26179 1.50858 1.24935 0.94768 0.98814 0.95319 0.86668 0.80145 0.84361 0.77620 1.19948 1.21033 1.21129 1.21189 0.92622 0.90604 1.50125 0.92905 1.18753 0.92713 0.91642 0.94439 0.95457 1.21572 0.98268 1.00110 0.94530 1.21829 0.94280 0.90840 0.98535 1.60454 1.20930 1.46299 1.03882 1.20397 0.91251 0.92837 0.93011 0.92451 1.20236 0.94084 0.95098 0.96369 1.21236 0.92992 0.99463 0.99472 1.21008 0.99753 0.92118 1.00176 1.20941 0.93995 0.97994 1.01322 1.20967 0.94726 0.86455 1.04373 1.98347 1.90326 1.26094 1.90648 1.21038 1.00218 0.90576 0.98618 1.21633 0.97994 0.99576 0.93787 0.93104 0.95812 0.88842 0.94229 0.93396 0.85967 0.85523 0.85528 0.85619 0.83995 0.93228 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.31 55.43 0.63 -23.93 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.12 6.74 -34.44 -0.23 -13.35 16 8 H 0.05 1.36 6.88 -52.49 -0.36 1.00 16 9 C 0.04 1.04 2.62 -91.60 -0.24 0.80 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.11 -2.46 5.41 -26.65 -0.14 -2.60 16 12 C 0.07 1.49 6.34 -3.83 -0.02 1.47 16 13 N -0.69 -12.27 5.73 -107.98 -0.62 -12.89 16 14 C 0.13 2.46 2.42 -68.88 -0.17 2.29 16 15 H 0.06 1.15 6.65 -51.93 -0.35 0.80 16 16 C -0.06 -0.89 4.86 -104.63 -0.51 -1.40 16 17 C -0.11 -1.57 9.67 -39.58 -0.38 -1.96 16 18 C -0.11 -1.34 10.04 -39.59 -0.40 -1.74 16 19 C -0.12 -1.50 9.83 -39.55 -0.39 -1.89 16 20 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 21 Cl -0.08 -1.03 28.96 -51.86 -1.50 -2.54 16 22 C -0.09 -1.28 9.11 -39.55 -0.36 -1.64 16 23 C -0.09 -1.89 4.81 -26.61 -0.13 -2.02 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 2.41 6.02 -51.93 -0.31 2.10 16 27 H 0.04 0.88 7.31 -51.93 -0.38 0.50 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.32 5.17 8.78 -39.29 -0.35 4.82 16 30 H 0.13 1.67 8.04 -52.49 -0.42 1.25 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 2.22 7.71 -52.49 -0.40 1.82 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -26.63 296.86 -10.02 -36.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.66 Total: 3.86 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.32 Total: -21.25 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.01 Total: -36.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.63 -10.02 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.593 kcal (2) G-P(sol) polarization free energy of solvation -26.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds